Map Locations of contig_39220 (8866 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_39220

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54574 2 2592 bp AK250416.1 Available Available None
MLOC_54573 1 1321 bp AK359971 Available Available None





CDS Structure of MLOC_54574






CDS Structure of MLOC_54573






Contig Sequence (8866 bp)

>contig_39220 8866 assembly3_WGSMorex_rbca.fasta
GGAGGACGGGGGTGAGGGGTGGGGGGGGGGGGGGGTATTAGTTTTGTGATGTGCATGTGT
GCCTGACCTGATAGCAATGTGATTTGTGCTTACGGACAAGCACCTTATAATGACTAGATA
GATTAATAGACCAGACTTTCCCATGTGTTATTTTTTATTGCTAACAACTGGTCTATTCTA
TTTTCTCAGACCAAGCTGACCATTTGTGAAGGAGAAGACGGCACTGAGTCATCTCTTGGA
GACGTGTTGATTTTTCCTGATATGATTCGATACAGGTAACTGAAAGCTGCAAAGAAATAA
ACATTCAGTCTTTCCCTTTCTACTAATATTTATTAGGTAATGGAATACATAAGTCAACTG
ATTGTTTTCTTCAATACATGGTGTAATCTTTGCAGAGGGCTGACCCACTTTGATGTTGAC
AATTTTGTTGAAGAAGTACTCGTGAAAGATACTGAATGGCTTCCTGGATCTCCTGAGGCT
ATAAGAGGTTCCTTTGTTTTTGTCTGCTGCCATGGAAGCAGGGATAAAAGGTGTGGTGTT
TGTGGTCCTGCTTTGATTACAAGGTTCAAGGAAGAGATTGAAGCAGAAGGTCTTGATGAT
CACGTGGCTGTTAGTGCATGCTCACATGTGGGAGGTCATAAGTATGCAGGAAATGTCATC
ATATTCAGTCCAGGTGCCAAGGGAGAAGTGACTGGTAATTGGTATGTACCAGGAACTATC
ATAAAATCTACATTCTCGTGCCCTGGGAATCTCAATGCCTTCCTGTAGCACTCTGTTTTA
ACTTTACTTTGTCAAAACCCAGTCATTGCTTACTGTATTCGTAATTCTAGGTATGGTTAT
GTTGCCCCTGATGATGTGCCTGAGTTACTGCACAGACAAGTTGGACAAAGAGGAGCGATT
GTGGACCGTCTATGGAGGTATGCTTCCTCTTTTAGTTGATCAATTTCATGTGTTGATTTT
GACTGAAGAGGATATTTGGTTAGTGTTTCACCAATACTGTAGTGTCATCGAATACTATCA
GCATTTTCAGATCTGCGTCCTTTTCACTTGCTGTTCTATCTTGCCTCGGGCGTGCTTATA
CATCATCGATTCTGAGCCTAAATCAATAATCTGATAATATTATAAAAACTGCCTGTTGTG
TGTTCTAGTACTTGTATGCCTATAGCACTGGTTACTCTATTTGGAAATGATTTGATTACT
TCAAGTAGTGTATTATAGTAAAGTAAGACTAGTGTGACTATAAGCATCTAGACAGTATGT
TGTAGGTTGTTCGTACTGCCTGCGTAGTTTTCATCAATTATGTTTAAGCACTCATTTGTA
GGACTTTTCTGTTCGTGTGATGCCATGTAAGCTACTACTGTGTTGTATTTTCAAATGGCC
TTGCTTTGTTTATTTGTGGTGACTTCAGAAATTGAAAAATGACCTTTCTGTGGTCATGGT
CAATCTCATTGCAACCAGACCAATAGCAAAGGATGCAATCTTGTTTTGCAAATGTTGTAT
AAAGCCCTGATATGTCTTGTTCATGTTTCATTGACCTTTTGCCCTATGTTCGCTCCATAG
CTGCATACCCCTCTTTGAAGTGTGGTTTTTACACTTGCTATCCTGTCATGCAGGGGTCAG
TTGGGTATGTCTGAGGAGCAGCAGAAGAAAGCTCTGGAGCTTAGGCACATGACGAATGGT
GTGACTGGGGAAGAATCAAGCGCCAAAGAATCCCCTAAAGCAAATGGAACTGACGGTGCA
CCTGCAGGTGGATGCTGCCAGGGCAATGGAGGAGGCTTTAGCTGCTGCCAAAGTGATCTG
CCAGAAGGAAAACAGGACAAGAGCATTACAGCTGAGCAGAACCACAAGAGCCCCAAGGCA
GAGAGTGTCAAAGAAAGTGTTGCCCCCAGCAAGGGTCGCATGAAGATTTGCCCGATGCCC
ACCTGGTTCGAGACCTGGGATAGGTCTGACACCTACACCACTCTTGCTGTTGTTGCAGCT
GCTGCAACGGTGTTCGTCGCTTTCAGGGCCTACAAGACCATGAACTGAAGCCTGTGAAGC
AATCTTCAAAACAATGCAGGTTTTGTGCATCAAGGAGAGTCTACCGAAGTTATATACTAG
TGCATAGTGGTAATGCTAGAACTTAAAAAGTAGCTGATCTGGAGATGGTGACGAAAATCT
GTTATGCGTAATGTCCTCATGCGAAACTCCTAGGTTTTGAAGTTTTCGACGCCTTGGCTA
TATGTGTTGTAGCAAGGCTATGGCCCTGGTGTTCTACATGACGATGTTATGCTCGGTTGG
TTGGAAGTGGGATGTTCTGAAACATTTGGGTTTTAAAGAATTGCAATAGAAAAAACTATG
CATTTTTGGTATTGTTGCATTTGACGATGTTATAGTCTGAAGATGTATCTGCTACAGGCA
TAAACTTCCTCTGCTAATTGTTGCATTTAGCAGTTGGATGCTATTCGATGTGCATTCTGA
AAGCACAGTTGCTATAAGCGGCAATCGCTGAAATAGTGATAGCTGATGGTTGTTTAAAAC
ATTGCATGATTTGTCCAGATTATTTATTTCCTAGGCTTTGGATCTCTTGGTAACACTAAC
ATGTTTGAATCTAATCCTGAGGGCACCATATCACAGATTGGGTATAATTCTAAAGAACTT
GACTTCATCAAGTTTGGGATTGGGTGGAAGCTGTTCGCATATGAAGAGATGAGCAATTTC
TTTTGGATCTATATATATTGATATAACAGAATAAAACACGCTACTCCCTCCAATTTACAT
TATTTATGGATTAAAAGGATGTATCAGGATAGGATGGAGTAACAAAATCTTTGATATTCC
ACACTTCTATAAAATCTACGCTATTCCCTATGGCTTAGCTATGATTGCAATGAATCTACT
CCTTCCGTTCCGCGTTAGTTGCCGCTCAAACAAATGTATTTATTAAAATCTTCACTATTC
TACACTTCCCTAGAAGCATCTTCTAAAACGACAGAAGTGTTCCTCTTGCATCAATAGAAC
TCCAGCTGAGCAAAAAACCAACAGAAACGTTGCTCATGCATCAGTAGAACTTGAGCTGCC
GCACAGAACAATTCAATCAAGCACGGTGCAAACCCTATGTAGCCCACATGAACGATCAAA
CACGGTAGGTTGCCCAGAACAACATTCAGTAATAGGAGCCTCAGTGTCCATGATGACTTC
ACTGAGAAAAACTACAATGACTGGTCATACTCTCCAAGAGAGAAACAAAAATATAGTGAT
TAGATTACACAATCACCTCCAGCGTACAACAAAATTTCGCTTCACCACAAGTACGTAGAC
CAAAATTGAGTGTACAGTTGCTCCTTTTACATTTCTTCATATATAGCACATCAAGTTTCA
CTTTAAATCTCGTCTTCTAAGGCTAATGTGGCTCTCTTGAACCACCAGTTCTCATACCTT
CGCCCTCTTCTCCGACTTCTGTTTTGCCTCCCTGTCAGTGAAAGAGTCAATTAAGAATCA
TCACGCAAATGCAAGAGAGAACAAATGAACAATAGGCCAAAGATAAGCGTCTCACCAGTC
CCGCCTCAGCTTGAATTGCCATTTCCTTTTCTTGTTTCCTTCCTTGGAGACCGGTTTCTT
CTCTTTCATCAGACTCCCTGAGGCGCTCTTGGAACCAGACTTCTTAATTTTATCAGAAGC
AGGCCCATCTCTCTTCTCTCCATTTATTGCAGTGCTTTTAGGTCCGTTACTTCTCTTCGC
ACCCTTATGGCTCTTGACCTGCTCTGTTTGCTCACTGGGTGTTTCTTTCTCATCTACATC
CATTCCAGCATCTTTAGGGCCTTTAATTTTCTTGGAACCCTTGTGGCTCTTGACCTGCTC
TGTTTGTTCATTGCCTGTTTCTTTCTTATCTCCGTTCATTTCAGCACTTTTAGGGCCACT
ACTTTTCTTCACCCCCTTATTGTTCTTGAGCTGCTTTGCAGGTCTTTCAGGTGCCTGACT
CTGGTCTCCCTCGCCTTCAGGGGTGCTTGCTTGTTCATTTTTCTTCTTTCCCTGTTTATG
ATTCTTCGACTTAGTGGGTTGTCTATCAGGAACATCTTTCTCATCTTCCTCATCATGGTT
AGGATCAACAACACCCTCGGCTGCTTCTTCAGGCTCTTTAGATGACTCGGAAGATGCTGG
AATTGTGTTGCTCATCTTCTTCAGCTGTATGAAATGAAATACCCTATCAGATTTTATTCT
ATATTTTATAATTTTACTTTTACAGAGTCAACTATACATGATAACTTAAATACATTCTAA
ACAGATTAATGTTAAATGAAATCATCAAACTATTAGCAAACAGAAGTTAGTTTTTTACAT
AAAGTTCTTGGATCAAAATTCATGCTATGAAAGATAAGGCACCTCAAGAAGCTAACATGT
GATTCTATAGTTCAGTTATTGTCACTCCTGGTAAATAATCCAAACATCATAAAATGTACC
TTGGCTACAAAAAAGCCATCCATGTTGTTGACATGAGGATAAAACCTCCTTGTTTTGTCT
AAAGACGTATGGAAGCGATGCTCCCGGAACCGGATGAATCTGTACAATAAACAGGGAAAC
ATAAGTACCAGATTTTAGGAGGAGGGAGGGGGGGGGGGGGGGTTAGATTAACATACCCTG
GCCGTCCAAAATCTAATCCACAAGGAACAACCTTCACATCTCTCTTTTTAAGGGCATAGT
CGATGACTGCTTCATTCTACACAAAAGGGGAGGGTTCAGTTGCTGAAGTTCAATCATTAT
CCAGCAAACAAACAAAATGTACTTACTTCTGGAATCATCATCGAACAAGTAGAGTAAACA
ATGTAACCACCGGTTTTGGAGTTGGCGTCAACCAAATCAATAGCAGCTAGGAGCAATTGC
TGCAAAACAAGTTTATCAGTTGCTCAGAGTTGGTATGCTAAAAATGCAAGGTAATTGAGG
CTCTTACTGCGAATATAAATTAACCATGCTATATCATGAGCCTAAGAACTTCTAATGGAA
ACAGTAAAGTTGAAAGGTTTAAATTACAATCAGACATAATTTGGAAAATAATGACTAAGC
AGATAGAATATAACAATATATGGTACTTATACGTCATCTTTATAAGAGATAAGAGACACA
GCGATACTAATTGCTTCAAAACCAACTAAAAAAATGCATGTGGAGGTGAGCAGATTTAAT
TTGGAGAATTACTGGGTTACTAACTAACATTAATTTGAAAGTGGGAATGGGTTTGAATTG
GAGAACGTGTATTTATTTGTAAATCGTGAATAAAATGCACCTTTTGTACGAAAGCACAAT
TCCTGATGTCATCGATGTCCTTAGATGTTTTTATTTGTGCATCCTTCCAAACGGTCTGCA
GAAACAGAGTGAGATTGACTATCAGCTGAAATAGCCAAGACTATACTGAGTACAGAAGAA
TAATATGAATTGGATTATACTTACTCCAGTGCCTGTGCAGGGCGCATCCAACAGTACTCT
GTCAACTGAGTTCATTCCAAGTACTTTGGGGAGCTGAAATCAATTGGATCATCATAAAAT
AATTGATGTCAACTGAGCACACAATGCAATAAACTAAGTGTCTGACAATTACTAGGATTC
TAAATCATTTTCTTATGATTGAAACGCCTTCACACTAAAAGTTCTCTACAAAGCATTATG
TTATATTGGTAATGATTTATGATACTAACTTATTGCATACAATTAGTTGACTACCCTTTG
GTGCTTTGGCCTAAAAAAATGCTGTGCCCCTGAGAACATACAATGGTCGTATTTTCTGCT
CACCTCTTTACCGTCATAATTACAAACTATGGTATTTGTCACACCCAGGCGATGTATGTT
ACCCAACAGTCCATGCAACCTTTTCTCGTTAAGCTCATTTGCATAGATTATTCCTGTAAG
ATAGGAAGAAAAATACAGGATAATTATATTTCATTCACAAGCTACTAAAAAGCAACAACA
GGTACATTGAAGGATCACATAGTCAAAAGGCAAAACAGGCATAATGAACTAACCAGTATT
TTTCATCAGAGCTCCAATGTATGTGGTCTTGCCACCTGGGGCAGCTCTGGAACCAAGAAG
AAAATCAGTTTACATCTTTGGAAGTACTGACATGAATAATTCATTGAAGGCTTACATACA
TGCAAACACAGTTATATATTAGTTCAAATGAATTATTGCAAATGGATTATGAGAGTGGGG
GGTAATCTTACGCCATATCAACTATTCGCTCCTTCTCCTGCGGAGCAAGAGCCATCACTG
GCAAAAAGGAACTCGCACCTTGTTTCTGTAATCACAGTATTAAAAGATAAGAACAATTGC
TGGTAGATGGATAGTGTGAAAAACAATCTTAACAGATAATAGGGGAGAGGAAAGATACCA
TGTAATGTCCTGCCATATATTCAACAGTGGCGCCAGAAGAAACACTGGAGTCATACACAA
CTAATCCTACCTGAAATTGTCCAAACCATGAGACTTGCTTTAATATTCCATACATTTAGC
TGTATTAGAAAATACGTCGAAAGAAAGCAAACCTTTGACCATTTTCCAATCGGATCCAGA
TTAAACCCTCTTGGAATAAGAGCAGCAGCAAGATCCCTCCTACGGGTCTGCAAACCCCAC
AAACAAGATAAGAGAGACATACTTAAGGAAGCAGTGATAAATCTACAGTCAGAGATTAAC
CTTTAATGTATTTGTACGCAAGCACTCGGGGGGTCTTTTTTCAAATGATTCAAGTAGCTC
AACAACCTCAACAGCTGGGAACATCTGCACAAATGTAGCACAAAGAATGTTCACAACAAC
AGCAGCTAAATCATGAAAAAAATGAATAAGTGTGCCAGACAGACAATTTGCAACTACTAA
TCTCAGACAGCTGGATCACCACAACTCAAACTGAAAGAAATACTGGCAGCAGGTATATCA
GAGAATCACTGGATGAGATAGGCAGCTGACCTCAACAAATGCTTCAATGAGAAATTCATT
GTATCCATAGTATGCCATCACGTCAGTCTTGAACTGATCGACATAATCTTTTCTGGCAAC
ATTTTCTTGCCTCAGCTTGCTAAAGTTTGAGAGTACCCGTACAACTAGACAGGAAACCAA
CAAATAGACAGAGAAACCAAGGTCAGAAAGGTCTGTCGATTCAAGTGCATCAAAATAAAG
AAAACCAATTCCATGTATTGAATGGTATATCCTGATCGTAGCAATCTGCTAAGTGGAAAA
ATAGACAAGCAGTAGATAGCATACGGTCTATATGCATTCCTTTTATTACAATTTAGTGTT
TATAGGAACCATGAGAAATGCACCTCAGTTACACAACCAGTAATTAGTTTGGTTCCAACA
CCATTTCAGCCTCATCTCTCTATCTATCCTTTAACGAAGTTGCGAACTTAAATAAACACA
AGATGTTAGATAAACTCACTTTCTGAGATCCTCCTTTTAAGATTTGGCAGGTTAGGTGGT
CCAAGTGCCTCTTCTTCCAACTCCTGCAGAGTTAAAATTAAAATCATGGTAAGCCCATGT
CACCTACAGTATGCAGTACATAAACAACACTGAAAGAACAAATGCGAACAGAAGAAGGAA
AAGCAACCTCCTTAGTGGGCAAACGAAATTCATCAGACTCTGATCTTATGTTGAGTGCAA
GGTCCGCCGCTGCATCTTCTTCAGCCTGCTCCTTCTGTCGATCAAGAGCAGCTGACCTTG
CCTCCAAGTCACCAGACCCGTCTGACTCCTCTCCAGAGTCGCCCCCCTCGTCTAAGAAAC
ACAACAAAGCCCATCAATTTCGACTCCCGGGACAGAAAATATAGCACTGCATTGAACTAG
CAACCACGAACTCAACAGTGGAATGACTTGATGGAGAAAACTGAAGCCGCTGAAGCTAAT
TCCACTCAATACTAGTACGTTTCTAACAGTCAAGCAATCCAAGAGTTACCACTGTCGTCG
TCACTGCCGGCAAGGAAATCGCCGGCGAGGGGATCGTCGTCTTCGACGTCTTCATCCTCG
TCGTCCTCGTCGTCGTCATCATCGTCCTCCACCCCATCGGCGTCCGAGCCCGAGAGCTCC
TCGGCATCGGAATCGGAGGGGGCCTCGACGTCTGAATCCTCCTCCTCCTCCTCCTCGTGG
AGCGGCTGCTCCGCCTCGGAGTCGTCGGAGGAGGAGGGCTCGGGAAGCTTCTGCTTCTTC
GGCGCCGCCCTCTTGGCCGTCCTCGAGGGGACCTTGACCACCTTCTTCGCCACGGGCGGC
GCGGGAGGCGCCGCCGGCCTGCGCTGCGCGACCTTCCTCGCCATGGGTAGGGGAACGGTA
GGGACGGGGGGGGGTGGCTGGTGAATGGTGGAGAGCAGAACCCTAAAACCCTAGAGCGAG
AGAGGGACGCTGGTTTTAACACGGGCCTGGCCGTGGACGCTGCCCGGTTAGGCGGGCTTG
ATATAACGGGCCAGTTAGGCAGGCTTCGCAAATGGCACGTCTAACTCTCTCGCATGCCGC
GAGTTTTTTTTTCCGTTGTTGTTGTTCTTTTAGGAAAGAGAAGCGAGTTTTTTATTTACT
AGCAAAAGGGCCCGCGCGTTGCAACGGTAGAAAAAATACCACATACTTTTAATCTTGGGA
AAATCTAATCGGTAGCGTGTCCACCGCTGCTTTTCCATGCGGCGACTCTCCACCCACGTT
TGATTTTTTTTTGAAGCCATACGTGATTTCTTGACGCGTGATTAGGTGATGTAATTTTTT
CTATCCCCGGAACAACACAGTGCTAGAGTGCAGCCAAACTCATCTCTCTTTATCATGCAT
GCATGCAATGATGTCATCAGATTCTCTCTAAATGACCGAAATTCAAAAACTTGTATCTCT
TAAACCGTTAATTTGATCGATGATCTGTTTTCGCCATTGACTTTGT