Contig Data
morexGenes
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Map Locations of contig_39191 (9003 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39191

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54525 5 3079 bp MLOC_54525.2 Available Available LOC_Os08g39560.1, FRAME:+2, EVALUE:1e-140, 13108.m04222 protein OTU-like cysteine protease family protein, putative, expressed





CDS Structure of MLOC_54525






Contig Sequence (9003 bp)

>contig_39191 9003 assembly3_WGSMorex_rbca.fasta
GGGTCATGCCCCCTGATGTCTAGCTTAAGTGACAGAAACATGAGACTAGGAGATGTGCTG
TTGCCACCAGGAAAAAAAAGTCATCTATTTGAAAAAAGTTCATATCTTTTAAAAAAGGTT
CATCAATTTTAAAAAACACTCGTTGAAATTGAAAAAATGTTCATCTAATTTGATAATAGT
TCATTAAATCTACAAAAACATTAAATTTGAGTTCATAGAAACTTTAAAAAACATCATGTA
TTTTTAAAAAAAGTTCATTAAATTGAAAACAAAGTTCATAAACCTTGAAAAAGTTCATCA
ATTTTTAAACTCAAATTTCATAGAAGGACTACTCACGGCACGTCCGGAAAGTTCGTCAAT
ATTCAAAAAGTTCATAATTTTTTTAATACTTTAAAAAAGGTTCATCGATTTTCAGAGAAA
ACTTAATTAATTTAATAAAATGTTCATCGAAATTTTAGAAAAAATCACCGTAGAATTTCC
AAAGAAAAATGTCATTCAATGTCTAGATGGAACGGTCCATTTAAGAGGGATGCAGACGCC
TGTTTACAAAATGCATATTAATTGACGCCTGTAGTGCTAAATAGGAAATGCCGAGGAATT
CTCATCCGTTTCGTCAACAACGTTACCTTGACTTCGTTGGTGCTCCGGAGATCAAGAGCC
GGCATCCAGCTTTGTTCATGGCGTGCCGTCTGCGAGTGAGGGAGGACGATCGCGTGGATG
TAACTACGCACCTGTGTTATTATTATTTTTTCGAACCGGGCTTTCTCCCCTTTCCATTAC
TTTCATAACGGAAATACAATGTTTTGGCACCTGTGTCATTTTAAGGACGGTTATTACATA
AGGCTTGAACGACTTTACTAAATGGCCTTGACGTCGTGAAAATAAACAGCGGGTAACGTG
CTGCACCAATCTGAATTAATTTGCTACAGATATGGATATCCGACGAGACGTGGATGGGCT
TTTAGTTCGAAGAATCGAAGGAGGGAAGCGTACGGTTGTAAGTCCCTCTCACTTTCCGCC
CCCCATGAATAGCCGGCGAGCGAGCGGTGCCGGTGAGTAGGTGACGCGGCAGGTTGGCGT
CGATTTCAGTTCCACCCGACTCGATCCGACCCCATGGAGACGAAACAGCACCTCACGGCC
TTTGCACATACCCATATATCTCTCTCACTCCTCCTCCCTGCCGGAGCTCCCTGCTCTCGG
TCTTGGTCTCGGCGTAAATCAAGCAGCCCGGACGCTCTCTAGCCAGCACTACAGCAGCCA
TTAATTGGAGTCCGGCTGATCGATTGAGGAGGCCGGGCGGCGGCATACATGGATCGCGGT
GCTGATGAGCAGGGCGGCCATGGCGACGCGGCGGAGTGGAAGAAGGTGGCTGAGCTTAGG
GCCGTCGTCGAGGCCCAGGACCCCGCTGCCAAGGTACCACTGACCATCTCCTTCCTCCTC
ATCACCTGTTGCCTGACTTTTGATCGATTCTCTTCCTCCCATAGGCCGTATAGCAGCTAG
CTTAATTAGCTCACACCTTATTTCTCGGTTCAGATAATCCGTTTCCTCTCTTAGTAGCAA
TCAATCAGCCATTACATCTTAATTACACAGACTGGTGAGATCACAGCTCGACTTGTGCTT
CGACTGTGAGTGCATGGCTAAGCAACTGACACCAAGCTACTAGAGTGTAGAGGTGTTCAG
GTTAGGAGACACGTACTCCCTCCGTCTGGAATTACTTGTGGCAAAAATAAATATAAATGA
ATATATCTAGAACTAAAATACATCTAGATACATTCGTTCCTCATACAAGTATTTTTGAAC
GGAGAAAGTACATACGTATTGTGACCAGGTCATCCAACCACCAGATCAGAATCTATCTGA
TCCACACTGCTGGTCAAGTCGGTCCGCGAGTGGTTGCCGGTCGCTTAAAGGCGTTGATGA
CATGAGACGAACACGCTCTTTGGTCCGAGCTAACTAGCCACATACATACTACGGCCACGA
CGCCCGTACCATACCTACCCTGCCTTAATCTCGCTTCGACCGATTAACCGTAGTAGCATA
ACCCTATCTGCATATGCAATAATAACAGGGTAAAACGTTGAACTGGTAGGGATGATCGAA
ACGAAACCCTAGAAGCACACAACTATGTACCCCGTCTCATAATATAATACTCCCTCCGTT
CCNNNNNNNNAGTCTTTTAAGCGATTTTACTAAAGGTCTACATATGGAGCAAAATGATTG
AATCTATATTCTAAAGTATGTCTATATATATCCGTATGTAGTCCACTAGTGAAATCTCTA
GAAAGACTTNNATTTAGGAACGGAGGGAGTAGCTTTTTTTGGCACTACACTAATGGAAAA
GCACTCTTGTATTATGGGATGGAAGGAATAGTTCTTTGCGAAGTATACAACCCGATTGCC
CAAATGACCGATAACCTTTTATAGAACCTATTTCCTCTGGTTCACAAGGGTTGCAGATAT
TTTCAATCATATACATTTCAACCAACAAAATGTGAGTTATATATCATCACGGAAATCATA
CCATTAAATTATCAACTCAATTAATGTATTCAAAGTAATAAACCAGCTAATATACCTTTC
AGGAGGAAGGTATATTATGTGCTGACATTGCCCCCATCTTTGATCCTCCCATACATACAT
ACACGCAGGAGGAAGACGACTTTGCTCTGCGGAGGTTCCTACGAGCTCGGGACCACAACA
TCAGCAAGGCGTCGGCGATGTTCCTCAAGTACTTGAGCTGGAAACGCGTCGTCAAGCCTG
GCGGTTCCATCACCGACGAGGAGGTGCGCGGCGAGCTCGTGCAAGAGAAGCTCTATATGC
AGGGCATCGACAAGAAGGGACGTCCGTTGGTGTACCTCTTCCTCGCCCGCCACTTCCCCG
CCAAGCGTGACCTCGACGAGTTCAAGCGCTACGTCGTCTACATCCTCGACAACACCTGCA
CCAGGTATATTATATAGGTTCAGTTAGTTGAATGCATGAGCAATCTGACCAGTTAACTGT
GGTTATATACATTGATTGATACGCATGCACGTGTGTCGGTATGTACGTTGAAACAGGTTG
TCGGCTGGACAGGAGAAGTTTGCGGTGGTGGTGGAGCTCCGGGGTTGGGGGTACGCGAAC
TGCGACATCCGTGCGTACGTGGCGGCGCTGGACATCATGCAGAGCTACTACCCGGAGCGG
CTGGGGCGGGCGCTCCTGATCCACGTGCCCTACGTGTTCATGGCGGCCTGGAAGATGCTG
TACCCCTTCATCGACGACAAGACCAAGGAGAAGTTCGTGTTCGTCGCCGACAAGGACCTC
GACGCCACGCTCCGTGACTCCGTCGACGAGTCCCAGCTGCCCGAGGAGTACGGCGGCACG
CTCGAGCTCCAGGGCTACAACGATTCGTCACGGCCGTCGCCGTGCAATTAACTATGGATG
AATGGTATGAGCATGGACGGGCACCGGTCCACTTGATCTTGCACCGTGTTTCTTGAAAAC
TTGTTTTGAACACAGTACATACGCGAGCGCTCGTATGAACGCGCATACACCTTCTAGTAA
TGATACCTGGACGTGCAATGCAATGCATGCTGACTGTACATGTACCTGGCCAGTGTGCCG
TGTATACACCGATAACGGACGGGTGGTCCGGTGCTCTTTTTTTTTTTTTTTCTCTGCGCA
GGCAGGAGGAGCATGCACTCCAGGGGAGTGTCAGCCATTCGGCCTGCCCGCGGAATTAGC
CCAATCGCCAGCGTTTGGTGTGTAGAGCTGAAGTGGGCCATAAATTCTCCCGAGCCCGAG
TGTATGGCCCAGTTTAGCTCCACATATAATAAAGCCCATCCATGACTTACCTCTTACTCG
TCCTGGTTGGTTCTGGAATATATATTTCTCAAAAGGAAAAGAAAAAAAAGGTCGGTTCTG
GAATCCTCTGGAGCCTGGGTAACCCGAGCTCGCCGCTTTGCTCCCATCCCCCTCTTCCTC
CTCCCGCTGCCGCCATTGCTCCGGCTCCAAGCAAACGCCCGCTCCCTTTGGTTCGTTGTC
CCGCCTAAGCGCTCATCCTTTCTCCTCGCCCTCACTTCTCCCCACCGCCCAAGGAAGGGG
GAGGCAAATCTCGTAGGCGTGAACCCCGCCCGTCCGTCCCCAGCTCCTCCTCCCCGTCCG
CCTGCGTCATCGCGAATTATCGCTTCCTCGAATTACGTCGGTAATGCCTGCCGCTTCTGT
CTCGTATACCTGTTGTTGCTGATCTGCATTACTATTTCGCAAGAATTTGGATTTCGTTCA
TGGCGCGGCGGCATTATTCGGAGGAGATTTTGCCTGCGTTTTGCTGCATCTTTTAGTAGA
ACGGCGGCGCGGGGCGTTCTTTCTCTCTGCTGGTATGAATGTATGATTGGCATGATGCCG
TCTTGGATGTGGTTCTTGTTAGCATCTGAATGTTGGGCAGCACGCTTTACCGATAATACT
TTGCTTTCTCTGTTTCTTATGTCTGGGAATTACGACTCAGTTTTTCGTGTTTCTTCGATA
TGACATGAATCTGAATCATCTAGAGCAAGAAAGGGATACCACGTGCTGTGTTGTTTACTA
GGCAATCAAGCCTGTTAGTCCACAACTTTACTATGGGAGAATGCTCAGAGTACATATGTG
CAGTTATCTTAAATACTTGTTCTGGACAGTGTTTCGGCTCAACACACTTAATTCCTCGTT
TTTACCTTTGAGTAGATGTCAACTAGGCTAGGATTGAGTAGATGTTACTCTGTATCATGA
TCATTACTGTTTTAATTTCTAAACCAGTCGTATCATGTTCTACTACTAGTTCTTATTGTC
ATTTGTCTGCATATGTACAGCTGATACTATTTGAGCTGGATGCGGCTCTATTCACCTGCA
ATCTGTGCGCGGCGATCTTCCTCAAGTAGTATGCATGCTCATTCCAATCAGTTTCAAGGA
GGACCCACACAGAGCATGGTCTTATGGAAGTGCTCCCGACCGCACTCAAGCCGCTCTCAT
ATGACATTGGGCTTAGCTGATTCTTCTCGTAACAAGAACACAAGATCTTCTGAAGCGCAG
AGTCTGAAGTACTTTGTCAGCTTAGTTGGCCGACGATTGCGTTGCGGATTATCAACCAGA
GAAGGCAGTCTAAGTGTAAAGCTCGACGTGCTTTCACCCGACAGAATTTCGGGTACTGGT
TTGAAATGGAGAGGTGTGCATCAAAAGATAGGAGCTACGGCCGGTGGACTCTGCTTTGGC
TTTTCAGTTTCAGGGATCGCAAAAGCTGAGATGCCTGTGGACAGAAAGATCAACTGTGCA
GAAACTTCAGCATCAACTTCTCATGGGAAGAAAGTCTACACGGATTATTCTGTCACCGGT
GAGAAATGCATTTGTGTTGGGCTTAATAATTGCTTTTGTTAAAGGAAAATAGAGTGCACT
TACAATATATATTTTTTGTGGACATTTCAGCATGACACTAAGCTACTACTTGTGACTGTT
TTACCTTGATTTGCTAGGCATTCCAGGAGATGGGAGATGCTTATTCCGCTCCGTGGTTCA
TGGGGCATGCATCCGCTCAGGGAAACCTATACCTAATGAAGATCTTCAGAGAAAGCTGGC
TGATGAATTGAGGTCAATGGTATGTCTGGTGTTTCTAGGTATTTTGTTCTCTAAAGCTGC
TATTGCTTTTCATTCTCTAAAGCTTCTAATCCATCATTGTAAAGGTTGCCGATGAATTTG
TCACTAGACGGGAAGAGACTGAATGGTTAGTTGATGCACATTCTTACTGTTATGTTTGCT
CCTCTGTTTTTAAAATGTGAATAAGACGTGGATAATTATTATTGATACATTTCGAACTGT
TGCATTTCGTTTGACAGGTTTGTTGAGGGCGATTTTGATACATACGTTTCCCAGATTAAG
CAGCCACATGTGTGGGGTGGTGAGCCAGAACTGTTCATGGCTTCACATGTTCTTCAGTAA
GTAATTAGACCTGTTATGCATTCCTCTTCATGGATACCAAGGGTGGCTACCAGCAATAAA
ATATGAAGGCTCACTTATGTTTTGTTAGCTAATATTTATATCCTCGTAGCTAAATAGCTT
AATGAAAAGAGTACATGTAGTGCAAATAATTCACTCTTTATTTTATCTGTGACCTTTTCC
AACTATGTTTATATCACATCATTTACAAAGAACGTATACCATTAGGGATAATAAAAAAAA
TCTTAGGAATTGTTCAAAATAGATGGAGTAGGCAACATTCAATGAAGTTGGCTAAATTCT
GGCGATAGTTAAAATTAGATAGCAAAGAATTTCTCATGTTAATGCAAGGAAAAAGGTTCC
ATTTTGATTTGATGTATGTCCAGTCCTTCAGTTAACATGCACTTAGCAGTACTGCACATG
GAGTAATAAGGACACCATTACTTCGTTTACACAGGATGCCAATAACTGTGTACATGCGTG
ATGAAGATGTGGGTGGTTTGATAACCATTGCTGAGTATGGCCAAGAGTACGGTAAAGAGG
ATCCAATACAAGTTCTGTATCATGGTTTTGGCCATTATGATTCCCTACAGATTCAGAAGA
CATAGGGGTCCAAAGACAAGAACATAGAATTTGGGAGTTCGAGATTCAGAAGGTAAGGCC
AAAGTATTCTGGTTTCAAGTTTTCCAATGTCGACGTATTGGTGAGAAAGCGGGAGTAATT
GTTATATATCCTCAGTGAGAAGTATTACTAAGCTTTGCAGCATTATTAGCTGAGTTGAAA
AGAACAAACTTCACATTAGGTTTTCCATAATAATGTAGTGATGAGTAAGAAATCACGAAT
CAGGAGAAAACCGACCACATGACTGTACCTCATATGATCGTATCTCTCCCTTCTTTCAGA
CAAATCTAGTCTAGTGCACCTATAACATATCTATAATAACAAGTTATGAATCCTGAACCT
CTTATGTAGATACCGTTTCCCTTCTGTAAAAAGTAAGTATCCTTGAGGCTGAACTTATTG
TTGGCAGGCACCGTTGCAAAAGCATTTGATCGTGTGCGATAGCCTGGAGCCTGGATGACT
TTGTCCGCAAGCACATGCTCGTAGAAGATGACAAGAGATTCCGTTATCTGTATGAAGCCG
CACGAAGGAGCAAAATTTGGATGGGAGAGGACTAAATCCTGTTGTTATGTTGTTGTTCAT
GTACTCACCGTAGGGTGTAGGTTGCAGATATGACTTTGATGTAATCTCTACTGCTGTGGC
AATAAAAAATGGTGGCGGATCAGTGATACTATCTTCCCACCTTCAGATGCTGATAGACGA
ATAACAAGCACTACCTTTGCTAGCCGCAAGTTGTGCACATCATTGTAAATCATCAGTAAT
GTATTCCCTCCGTTACTAAATATTTGTCTTTTTAGAGAGTTCACTATAAACTACATACGA
ATGTATATAGACATAATTTAAAATATAGATTCATTTTTTTTCTTTTGTATGTACTCCCTC
AGTTCCTAAATATNNNNNNNTTTAGAGATTTCACTAAAGGACTACATACGAAGCAAAATG
AGTGAATCTAAATTCTAATGTATGTCTACATACATCCGTAGAAACTCTTAAAATACTTAT
ATTTAGAAACGGAGGGAGTAGTTCATAGTTGAATCTTTAAAAATTAGACAAATAATTAAG
AACGGAGCGAGTATAAAAGTATTTCTGGCGGCCATCAACATTATTATGAAGTAGAGCATT
TTAGTCGTAACATAGGGTTCGGTCATCTGTACCTTCATGTATATAAGACGATCTTTGGTG
AGAAGGAACAAAACGCTTGTAACGAGTGCCCCTTCTCTCAAATGAGTTAAAATTATATTG
TAGTATGTTTTTTTATCTCTAGCTCACCAAGAGTAGAACAGGAATTAATTTGTGAGAGAC
ATTAGGTCCTTTTAAGAAATGCTGGTTTATGTGGAAAACCGGCCGGCCAGGTGGGAGCGG
TTTTCTCTTTCCTTTTTCTAATCTCTCTTTCTTTTTATGCAGCAGCAGCAGCAGCAGCAG
CATTTTATCGAGCACTCACCCTGCACACCGACGGCAACGGGCGGGGGCGGGCGACGCTGC
CGAGCTGGAAGCCATGCGTCTCCCGCCACCTCCACGTCGACCCCCTTCTTTGCCATGGCG
CGCGTGACGAGAGGCTGGCCGAGCACGAACGGCGAAGCCCTCCACCCTCCACGCCACACC
CATTGTGCGTCACGTCCCAACTCTGCCACCTGCCGCACCCACCCCACCTCCACCTCCACC
TGGACCATGCATTGCAGGCCACGAGTTGGACGCTCAAGTGGGAGTCCGTGAACGTGGTGA
AGCCGCTGCTGTGCAGCATGACGAGCAGGGGCGAATTTACCGTCCGGGCACCCTGGGCAC
GTGCCCCGGCTCGACGACGGCGATTTTCTGAACTATATCTAGCTTTCCAAGGTATTATAT
ACATAAAAATCGCGATAGAAAATACGTGCAGTGTTTTAACTGGGCCTGCCTGGGTGTTTT
TCATACAGTTTGGGTACCCTTGTGGACAACGTGTATTACAAGGGCCACAAGGACCAGTTT
TTTTTTTTTTTGCGTCAAAATTTCAGAGCTTTATTGATGAAAAGTGTTCGCTGGGCAGTC
AGCCAAAAGGCTGCTCACCAGAAAACTAGGAGTTTCAGTAAACCAGCTTCCGGTAGCGTT
TCTTATGCAAGCATACTTGGCACATAGATGCGCTGGACCGTTTGCTGCTCTTAATACATG
CTGAATTACAAAAGAGGAAAAAGTAAGAGAAAGCTCTTCAATCTCAAATAGAATTGCAAC
CACGACGGATCGTCCGTCACGGCGATCATGCCAGAGATTAACCACCTCCTGGCAGTCTGT
TTCCATCACCATATCAGGGAAGCCCCTTAGGCTTGCAAATATGACTCCTTCCCTTAGTGC
AAGGGTTTCGGCAATGAGGGGATCAGTCACCCCAGCATGAGGCTTGGCCCATGCACCTAG
TAAGGAGCATCTGGGTTCCTGTAGACGTCTACGCTACAAACGCGAGACGTAAAGATCGGC
TGC