Map Locations of contig_39179 (8045 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_39179

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54502 1 1587 bp AK372417 Available Available None
MLOC_54504 6 1977 bp MLOC_54504.2 Available Available LOC_Os05g01510.2, FRAME:-2, EVALUE:2e-80, 13105.m00088 protein cytoplasmic membrane protein, putative, expressed
MLOC_54503 1 172 bp None Available Available None





CDS Structure of MLOC_54502






CDS Structure of MLOC_54504






CDS Structure of MLOC_54503






Contig Sequence (8045 bp)

>contig_39179 8045 assembly3_WGSMorex_rbca.fasta
CGGCGGGGCCGGAGAAGCTGATCGCGCTGTGCAGGGAGGGACGGGCCAAGGAGGCGGTGG
AGCTGCTCGAGAAGGGGGCGCGCGCGGACGCGGCGTCCTTCTACGAGCTCGCCGGCGCCT
GCTCCACGCCCAAGCTGCTGGAGGAGCTCCGCAAGGTGCACGACTACCTGCTCCGCTCGC
CGTTCCGGGCCGACCTCCAGGTCAACAACCGGTTCCTCGAGATGTACGGCCGGTGCGGCA
ACATGACCCACGCACGCAGGACGTTCGACCATATGCCCGACCGGGACATGGCCTCCTGGC
ACCTCATGATCGAGGGCTACGCGGCCAACGGGCTCGGTGACGCAGCGCTGCAGCTCTTCG
AGGAGATGAAGCGGTGCGGCATGGCGCCCACCGCGCGCACCTTCGTGCTGGTCCTCGACG
CCTGCGCCAACTCGGAGGCCATCGAGGAGGCATTCCTCTACTTCGACGCCATGTCGAGGG
ACCATGGCATCGAGCCCGGCATGGAGCACTACGTCGGGATCATCGAGGTGCTGGGCAAGT
CGGGGCACCTCGATGAGGCCGTGGAGTACGTCGAGAAGCTGCCGTTTGAGCCCAACGCCA
TGATCTGGGAGTCGGTCCTGAACCTTGCGCGCATGAACGGCGACATTGACCTCGAGGACC
GGGTGGAGGAGCTGCTGGTCTCGCTCGACCCGTCCAAGGCCAACCCCAAGAAGCTCCCGA
CCCCTCCTCCGAAGCGGCGGCTCGGGATCAACATGCTCGACGGGAGGAACAAGCTGGGGG
AGTACAGGCTGCCGCCAAAGATTGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTCCCGG
ACACGAGGTACGTGCTCCACGACATCGACCAAGAGGCCAAGGAGCAGGCGCTGCTGTACC
ACAGCGAGCGTCTGGCCATCGCCTACGGTCTGATCAGCACCCCGGCCAGGACCCCGCTGC
GCATCATCAAGAACCTCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTCGA
GGATCGTCGGGCGGGAGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGG
GCAAGTGCTCCTGCGGCGACTACTGGTGATCCAACATGGTTCCTGGATGATTTTATCTGA
TCGAAATGTGGCCTTGTCGTCCAAGTCGAACTCTCTTTCTCGCTGTTCTATATGAACATA
TATGTCTACAGTGAGACATGCTCTTAGGGCGTAAGCAGTATCAAGATATCTACTGGTACT
TGCTACTGGTAGAAGTAGAGACTATCCCTTCCTTATAGCTATTTCGTCAGTATTTCTCGA
ATGCATGATGTCATTTTTAGCCACTACCTGTTCGTATGCACTAGAAAACCATAGCTTCTT
GATGCACAGATCAATCTCTTCTTCATATGGATCGATCGTCGTGTGCTTGGTATGGGATTC
ATGTAGCCGATGACCGACCGCATGATTGTAAGAGGTTATTTTTATCTCTATATCCCTTTT
GGATTATGATAATAAGTAAATGGAAACTAGTCTTGTATATCCGCGTTCCTTTGTAGTAGT
ATTTTTGAATCAGTATTTGCTATTGGACTGCCTCATTGTTGTTCTATCCTTGTGCTTTTC
TGTTCCACCCTGACAAAGTGACAGGAGGAGGCAGCTGAAGAAAGAGCTACTCCTTCGGTA
AACAAATATAAGAGGAGGCTCTTATATTTGTCTTATACTCCATCCGTCCCAAAATAAATG
ATCCAACTTTGCACTAACTTCGTGTAAAGTTGAATCATTTTTGAGTCGCTTATTTTGAGA
CGAAGGGAGTAGTTTGCAGCACAAACAAGTTAAAATTTTGAGACGAAGGAAGTAGTTTGC
AGCGCAAACAAGTTAAAACGAGGTTATGTCATTGGTGGCCGGATTGTTTCTTCTTCATTT
TACGTACATATAGTTGTAGAGCAAGTTACTGGCACAATGACAAATTGGAGCTGACAAAAG
TAAAATGATCCCTCGTGTGGAGATGGAGCTATTGAGCAAGAGATGTTAAAAAAGACCTCT
ATCCCGTGTGAGCATTGTTGTTTCTGCTTATGGATTTTGGCAATTTTGTCTCTACATTTA
CTCTTTTGGTACAGCTTATATGTATCGATGCATTTTACATGCAGTCACACATGTGGCTAT
TGCTCTCCACAGCGTCCCTTACAGGTCGCTTCAGTTAGACATGCTTCACAAAGACACTGA
GTCGAATTTTGACCTCTCCAAACTCAGTATCCTTTATTTATTTACCGTATTGTATGTATG
AGAGATACCCCTCTGTCCCATCATGCAAGACATACGTTTTTTGACACTGCAATAGTGTCA
AAAAACGTCTTACATTATTATGGAACAGAGGGTGTATATCTTAATAGAAGACCTGTATAT
ATACATATTTGCCTAGAGCTCCGCGTGAGGATACACGAGCTGTCCCTAACGGGAGTACTA
ACAGTTACGGGTAACACAATCAGCATAATATCTACAGACAATAGACAACAGTTTACATAA
CATGAGCCAGCAGATGAGAACGGCCAGTGGACACACAAATGCAGATGAGAAATGTCTGAT
GATGATGTCCAGATGACGGCACCGTAAGATCAGTCGGCATGGACGAGCAATGGTGCAGCC
CCATTTTCGGGTTCAGATTCGTTCGGGCAAAGCAAAACCTAGTAGAGATGAAAAGAAACA
TGTCTCAAATAGACGGTCCATAGTTTCCAAAGCAACGATGAATATCATCAGGTTTGAAAC
AGGTGAGTTGCACACGTGAAATGAAGAAATCGAAAAAATTGCTACTGCTTCATATATAAG
AAATACAGCGCCTCAACATGTGGCTTGCTAACACATGGAGCATATGCCTCTGAATCTGAT
ACTAACACAAGTATATGTCTCTGCAAATCTATTTATGCGCTAGCCCTTAGGAGTTACGAC
GTCTGAGTAAACCATTGACCAGACCATCTCAATCGGACAATATAATGAATTCGCGTACAC
AGCTTCAAATGTGTTATGAAAGTTGCTTTAGGGGAAAACAGCTACATTATACCGCTTTCA
TTGGCGTCCTGGGGCTCGAAGGAATCACGCCAAACCTGCTGACCAGGTACTTGAAACAAG
GGACGGATAAGGTGTACAGCCCAGCCATCACAAACGGTGCAGCAACCATCCAGCCGAGAA
TCTGTATTCATTCAACAATGGCAACAGTCATGTCAGTGTTTCTGAGGAAAAATACGACAC
AATGCTCATTTCTTATGGATGGGATAAACTTGATGGCCAAACCAATTTTACTAACCGCGT
GAAAAATGCTGAGGAGCACGCCCTTTGAGGCATGGCCAGTGAGGACCATCTTGAATGCAT
CAGATGTCAAGGGGAAGTGCTCACCGCCCGTGACTGCTTCTCCCAAACGCAAGAAAGGAA
TGATCAAGCTGAGGAAAACATAATCAGGAAACGACACTGCCAAACTCATTGAAACCAGAT
ATAGGGAGGATCCGGTAAAAATGAAAGTTCACTGGTAGCTCTAAATCAATTAAAACATGA
TTGCTTATAGCTTACAATTGCTGTGCCCAGGTACAATGGCAGTGAAAATGCACTAAAGCT
GCGAACCATTGGGAATAAAATTTCAAGAAATTTAAATAAATATTGACAGAGGGGGCGCAA
GTTGTATGCCATGCAAAATTTCAAAGATCAAACCCTGTTAAAAAAGAAACAAGTCCCCGG
AGATATAGAGCATGACCTCCCACTCTTTCCTTACAAAATAGCCCATTTTGGAATGATATT
TGCCCCTAATTATATTTAATCATTTAGATTGAAACGTCTATCACAATGCAACTGTAAAGC
CAAGCTAAAGAAAATACACTAGTCTACTGAAGAACTTTGTTCGGCATTAAACAAGTCATG
AAAAGGAAATCCATTATTTCAAGGTCAGCGTGCCTGGAAACTAGCAGCAGCACATGGATT
ATCACCAGCCACTTTTTTCAAGTAGCATAATAACCAAAGCGGATTTGGGGTATCAGCACT
GTAATGCATGTTATGTATAACAAAAGTACGTCCTATGAACAAGGAACTTGAGACTACCAA
ATTCAAAAGAAGTAATTGAGTACACAAATCTGCCCTGTTATGACTTACGAACACAGCTTG
AGCTATGTGGAGTCTTGTACACCCTCACTTTTATATACAGGTAAATGAATGCCATTAAAA
AAAAAGGTAAATGATAGCACAGAAAAGAGAAATCGGCCTTAAGTGGACGAAAAGGACAGA
ACAAAGTTTGAGTGATATTAAGTGAAACAACATAGTTTAGTGATATAGAGCTTAAGTCTG
TATCTTTCAGCGCTAAAGTGAACCTACTATTCCTATACTCCCTCCGCCCGCGAATAAGTG
TACTTCTAACTTTTGTCCTAAGTCGAAGTATTAAAAATTTCGCCAACTTTATAGAGAAAA
GCAACAGCATTTATGGCACTAAATTAGTATCAGTAGATAGATTTTGAAATGTACTTTCAT
AATATACCTATTTGATGGCATATATATTACTATCCTTGTCTATAAACTTAGTCAAGACTT
TAAAATTTTGACTTAGGACAAAAGGTAGAAGTACACCTATTCGTGGACGGAGGGAGTACA
TAAAGCTTGGCATGGAACCAATAACTGTTCATATAGTTAAAGCTTGACATAGAACCAACA
TCCGTCCATATAATTAAAGCTTGACATAGAACCAACAGCCGTCCATATGATTAAAAAGCT
TGACATAGAACCGACAATTATTTCTAGATACAGAGCTCGACATAGAACCAGCAATTCTTC
TTATATAAGGATTCAGAAAATGGAACTTGATTTACTGTACTTAATGCTGACTGCGCGTGC
TTACCTTAGCTCGAGAGGAGTGGCAGCTAAATTCAGAACCATGACAGTAACGGCATTGCA
GCGAGCTCCTAACATGGCCACAGCAAGTCCACCGATAATAACAGTGGTCCCTATACAATC
AACGAAGGCCAAGTTCACATCAAGTTGCTTTGAGAAAAAGTATTATGAAAAAGTATTATG
AAACGTGTACAATAACTGCACAGCGCTGAACCTCAACAACTTGGAAGAAGTTTTTCCTAA
GCTACCACATGTAATTGACAGGTGCTTTTCTGTAAATCCTTAAGCCCAACAATGTTGATG
ACAAGAAAGAATGGCCAAAACTCTGAACACGCCGGGATGGAGAGCCATCAGTTGGAGACG
TAAATGAAGGGCTCATAGCAAAGCCGTGTGTTTTGCAGGAACTGAGCCGTGTTGTGCTCA
AACTGTGGCCGCACACGCACGCATCGGATCCGATTGTACTGTGTTGCTGCGCCGACACGG
CATGCGTATGGAGAATTCGAATCTAGATAATTTGAAGCGCGGATAAATTATCGTCAGCCA
CGTACCGCAGATGGGGAAGATCCCGATGGTGACGCCGAGCGCGGCGGAGAAGGCGAGCTG
CTTCGGCTCCGCGCCCCTGCACCGCAACACAAGGCTCGTCATCGTCAGCAGCAGCGGCAG
CAATATCCATCGAACCGGGGCCGGCGAGCAGATACGAAGCGGAACCAGGGGCTCACCTCT
GGATCACCTGCAGCAGGGGGTCGACGACCCTGGCGTTGAGCCACGCGAGGACCACTGCCA
TCTCTCCCCCTCCCCCCTCCCTCCGCGCGGATCGGGGCCCGGGTTGGTCGGTAGGCGAAC
CGGAAGAGCGACGCGAGGCGAGGCGGGAGGAGGAGGGCCTGAGGGCCGGGGAGGCGGCGG
AGACGCGGCGGTCAGGGCGTCGGCGGCGGAGGGGAACGTCGTCGGCGCAGCGTGGCGGTG
GGCGCGAGGGAGGGAGAACGCGGGGGGTAGAAATGGAATTGGAAAATGGAAATGGTCTGC
GCGTGCGCCACCGGCCAGGGAAGAAAATCTCTCCTCCCTTTGATATTTTGGCACCCCCGG
GGGCAGAACCGTCTTTTCCCCTGTGGGCTTTTTGGCTTGCTATAAGCAAAGATACTAAAA
TGTTGTTGTACTGTATATTATAGTATTCCATAACATTTGGAACGGGAGGGACACTTTATC
CAAGTGGCAAGCTAAGACGTGATGTGTGATCTTTTCTTCTTCCTTTGCTTGTGGGTGTTT
TAGAGGTGCATAGCTTTGACTGTCCTTTGTGACAGAGACTAGTCGATCCAATATATGTTT
ATTGACTGTTCTTTGGCTAGGCTACCGTGACACACAATACACGTAGCTTTTAACGTCGGT
CTTTCTGATAGCATTGGAACCTTATTCGCAACTTGGTTACACGTGGTACAACCTAAGTTA
GCAACACATATTTGAGTTGGAGTATGCGCATTATTTTAGGTTATTTGAGCAAATTTTCAA
CATGCATAATATCACATTCTTTTTGCAGGTTATCTTCAGGGCAACTGTCTGGATTCATAC
GTGGTCGTTACTTAGCCGTGCACAAGTCATGGAGCATGTGGCTTATGGATGCAACCGTTG
GGAAACGGTAGCACAGAATACCTATAACCGGTTTGGCAATACAATAGGTGTCTAAACATC
TAGTTATATGGTTAGTCGGTTGTGGCTTTTGTGATATATCCTTATCTTATTTTTCTTTGA
ATTAGATGATTTCGTGTATTTCTTAAAGCCATGATATCTGAAGTGTTTCGGTGTGATAAG
AGAGCAGCCTTCACTTTTTGCATTTTTTCGTACATCTACGAATTTCATCCCTACACACGA
AATTCCACTCTCCTCTTGTTGGTGTCAAAACCGGCAGATTTTGGATCGATGGGTTGCAGG
AAGAGGGGGGAGACATTGGTTTACCCAGGTTCGGGCCCTCCTATGGAGGTAATATCCTAC
GTCCTACTTGATTGTAATTATGAAGATGATTACACAGTTGATCTAACTTGAGATCATATA
TGCTAAACCCTAGATGATTTAGCCTACTCTACACAGATAGGGGACCTGGTTTATATAGAC
ACCAGGATCCCTAGGGTTTACAAGTTACCGACTACAATCGGGAATAGATGAGCCGACCTA
TTCTTTCTAAGCTTAAAGTACACGCCAATCTTCAGGATATTCCTTCCAAAGTAGAGGTCG
TCATCACGCCCGGTCTTCTTCAGCGCGGCCCAATAGGCTCATCCAGTATTGACTAACCGG
TCACCCGAGGACCCCAGAATCCCGGACTCCCTCAGTAGCCTCTGAACTATCCTTCAACGT
CGGTGTGTTTAGTCTTCGACAACCTCTCATATCGATAGTAATCGGCTTGCAAGGTGAGTT
CCACCCATGCCCGGCTGATTGTGATTTGATCGCTTCACTAACCTGCACATCTTTAAAACT
GGCATCTTTTTTAACGAAGGCATTTAAACGCCCATGTGTGAATAGCCCCTCAATTGGCAG
GCTTTCCCGACGAAAGGTCGCCTCAAACCGCGGCTCAGGGCCATGCTTCAAGGGACACAC
CCTCTCGAGGAGATCGTGCCTCCGCATTTACTGGTATACCAATAACTGCACATGCTTACC
AACGAGCATAACGGCTCGATAATTTTTCAGAGGTGGGTGGTGGAACAACTGGCGCAGTAA
AAGGGACCCTTGGTATTACAATCCCTTATAAAAAGGAACAAAGATCCAAAAGTTTCTACC
ACCTGCATCCTCGGCTTCGAGCCCACACCATGGCCGGCTCTCATGGTAAGTGGGAGGTGT
CGACCATCTCCGACGCTCACATCGAGGAGCTGAAGCGCTACGGATATCTTTCCTCTGACA
TTGCCCACCGGGCAGCGGAGGCAGGCCAAGGGATCCCGACTCCAAGGTCGGGTGAGCGGG
TAGTGTTCATTCCGCATTTCCTCTAGGGTCTAGGTTTTCCCCTTCACCCTTTCGTTAGGG
GCCCTACGTTCTATTAAGTCCTGGATTCCCATGATCTTCCTCCCAACTCCATTATGCACA
TTACCTCCTTCATCATCGTGTGCGAAGCATTCTTGCGGGTTCACCCCATTTTGGGCTCTG
GCTCAAGACGTTCAACGTCAAGCCAAAGTCGGTGAGGAGCCAGCATGCTAATTGCGGCGG
GGCGG