morexGenes - Barley RNA-seq Database

Contig contig_39173
Source Contig contig_39173
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39173 (8226 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39173

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54496	1	1940 bp	MLOC_54496.1	Available	Available	LOC_Os08g36020.1, FRAME:-2, EVALUE:7e-166, 13108.m03781 protein Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed
MLOC_54495	1	572 bp	None	Available	Available	None
CDS Structure of MLOC_54496

CDS Structure of MLOC_54495

Contig Sequence (8226 bp)

>contig_39173 8226 assembly3_WGSMorex_rbca.fasta
CGAGAGAAATCATCTATAAAGATAATTAGCGCCTCCCTTCGAGGAAAAGGGAGCTGGAGA
GGTGGAGAGACTGGCTGCGGTGGCAGTGGATGGAAGGTGAAGCCAGTCAAGCTCCAAGAG
ACCCTGAGAGTCATTGCATCGGGGGTCAGCACCAAGAAGAGCACCAGTGTGAAGGTCCAG
AACTGAACATGAGTCAAAGTCAAGAATGACCCGACAACCAGAGTCAACAATCTGACCACC
ACAAATGAGCTGCATGGTAAGACGAGGAACATGAAAAGATGAAGTGCTATAAGTGCCTCG
GCCAGTAAACAGGAGAGAAGTACCATCGGCTGTAAGAACATGAACATGAAAATCAAGAGG
GAGAGTAGATGACGGAGTAGATGAATCATGAGTCATATGAAAAGATGCTCCAGTGTCAAG
AATCCATGAAGATGTACCTGCTTGTGTAGAAGGTGGTCTCACAATGCCAGAAGTCCTTAA
CAGAACCAACAGAACCTGTCAATGAAGAACCAAAAGATGGAGCTAGCAGACACTAAAATC
GTCCAATCTCCTGCTCAGTCAGGGGCGCAACTGAAGATGTCGATGTAGACGCACCCGACA
ACAGAGAGTCCGAGGCAATAAGCAGGGCGCGAAATCGTGCAATCTCATCCTCGATGAAGT
GCACAGCTGAAGTAGGCGGCGTAGTGGTACGAGGAGAGAAGCGACCACAACCACCTGTGA
AAGCCGCTAAATATGGCGGTGTAGCATGCCCAGTATCATCGGCAAAGGCCGATGGAGAAG
ACGAGGTCGTGTGCATACAAGCATCAAGTGCCAAGGAAAGACGCGTGGACGAAGCACATT
CCATGGAGTCATAGGCACCACGACAACCGGTGAAAGTCGCGAAGGTGTCGGGGAAGAGCG
ACATGCACCGATTAAAGTCACAAGAGGAGTCGATGTAGAGCGACAATCATCATATATGGA
GCTCGCAGGAGAAGGAGCAGAAGAGCTACCAACACAACCATCGGGAGTCACCGGGAAGCA
AGGGACTGCAACGCTGGTGTAGACATTTTTTCTTTTTCTTTTTTTTCTTTTTCTACCAAA
GAAACTCAGTCAACGAAAAGCACACCAAGACCAAGCCTGGGATCTGGCAGGAACACCTGC
TCGTGCAGGCAGGGCGGAATCTGGAACCGCCTCGATCTGCTGCGTGGGAATCCAAAACCC
GGCATGGAGCCTACTCTGCTCGATGTGGAACCCGACCTAGAGGCTACTTGATCTGCATAT
CCACCCGACCTGGAGGAACGGCGGAGTGTTGCAGCAACAGCGAGATCCGGCGAGATCGGT
GGCTGCGGCAGAGAACCAGCAAGGGTGAGATCGACTTAGGGGCGGCGGAGGACCGGCGCG
GTGGCAACTACGGCGGAGGACCGGCGTGGGCTTGGGGGCGGCGGAGGACCGGCGCGGACC
TGGGGGCTGCGGAGGACCGGCGACGTTGATGGGATCCAGCACGGGAGGCTGGCAACGGGA
TCCAGCAGGGACTGGATCGGGGAGACGGGATCCAGCACGGGGGCTGGCTTCGAGCGGAAC
GGCGGCTTCGATCTGGAGGGCGGGGGTGGCTCGGGGAGGAGAGAGCACCAGCCGAGGTAG
CTGCAGCGCGAGCACGACGCGGCCAGGGAGGAGAGAGCGGCAGCCCAAGGTAGCTGCAGC
GCGACCGTCGGCGAGAGGAGCCGCAGCGTGACTGTCGGCGAGAGGAGGAAAAGCACAACC
CGTCGGCGCAATAACTGGATCGAAAAAAGCACGACTTACGTGTGCGAAAAAAACCCTAGG
GCTCTAATACTATGTTAGAAAATATGCAACTTGTATTTCCAGAAGACCATAGACCAGTAT
ATATACATGTACATGTATATAATATGTAAAAAAACTTATATAATAAGGTAAATACGAAAG
GTTATATGGCTACATTATAGGAGTAGTACTCCAACATCCACAAGAGACCATTAAATATTG
TGCTAGTTTTCTATTTTCTGTAACAATTTCTAGCCTGTGTTGGTTTGCCCTCAGACATTT
CAAAGCGCATCATTGGATTTTGTATGTATAAGTATGTTTGTGTGGTGAACTATTTTAGCT
AGAAGATGTACTTAAAACGATTTTGCAATACCGAATTTTACTGGATCGGGTCTGCTAGAG
ATGCTCTAATAGAGATTGTGTCGAAGTCTCGAAGGAGTTCGTACTAGAATGGACAAAACT
GAGTGACACAAAACTCGACATACTGACAGCAGTTCCCATGAAAATCGACAAAAAGTTCCA
TCATCAGGAGTCGGTTTTGACAAAAGCTACAGCTTCAGGACAGATGGTATGTCTACTAGA
CTACACAGTAGAAACCTTTTGAGCTAAAAAATAAAACCTCTTGAGCTACTCAACAGAAAG
TTCCTGCGCAATCTAAAGCCAGGACAACATGTGGATGGCCACATAATCAGGGAGAGCCTG
GCAGATCAGTTTAGTTCAGAAAGTTCCTTCTGAAGACGCCTTCACCTCACACACGCTTTA
CACTGATCGATGCTGCTGCCCAGAGAGGGAGTAATGTTAACTCAAACTGCAAATGTACAA
CATGGATCCACGGCTGGCTCATGTCAACGGCGAAGTTCTAGGTTTTGTTTTCATCTGTGC
TTCTTCAGTTCTTCTGTCTCAGAGGTACTGTTCATGTATCCTCGTCCGGTTCTCTTCCCA
CCATAGCCTCGCATGCATCTCGCTGAACTTCTCTCGGCTGCAAAGCAGAACAAAAGACAT
GCAATGATTGACCATCTTGCATGAACACACTCCCAGATAGTAAGACCAGGGCCACTGGAA
CCATTTCACCAAACTTGCATTGTTACGACTAAGTTGTTGTTCTGATTTCTGACTTAGCCT
GTGTTATATTTTCTCTTGCAGTTTTATGGCCCTATGGACCTCCTAAAAATGGTTCTCGGA
TAATTTCATTCACAAGGAAATGAAATAAGGGAAGGACAGAAGACAAACCTGAATCGGACA
CGGCGAAGCTCTCTGATGCCACCAGGCAAAGCCCGGATGGTAATATATACACCAGGCTGG
TCTTCCTCAACCCATTCCCTCTCTTGGTCGCTCGCGTTGCTGATGGACACTGAGAGCTCG
CCAGACCTGTCGACCTCTTCTGGAGATGAACTCGTCCTCATCGACGCATCCATCGATGAT
GTTTCTGTCTTGGCCCCACTTATACTTGACAGCTTTGGTGTCGATGCCAGCCCCACTGAA
TCATAGCACTGGTGTCCATGGTGATGGTGGAGGTCGTTACAGTAGTGGTTAGGATGGTGC
TCAAGAGAATCAGAAGAAGAGTAACCCATCACTCCGCCACCGGTCGGTGGTCTCTGTAAA
GAACGAGGTAATCGCTCCTTGTCCAGTGGTGGTGTTACCGGGCTGTCCTCCTTTGAGCTC
TGCGGGAAAAGAATGGCCATGGGATGGTGTAAAGGCAATACTACAAGACGGACTCTCAAT
GATTGAAACAGCCAAGAATAAATTGAGCGCGTCTCACCTCATCTTCAGACTTTGGAGTAG
TGGGGAGAGGAACACTTTGATGGTTAAACCTCTGCACATTGTAAAGTTCCATAACCTTGT
CATAGTTCTCAGCCCACCATCTTTGCGCTTGCCATTTGTTGAACATCTCACGGCTGCCGC
ACACCATTCCATGCAAAAAGAAGTAGCAGCATGAGATACAGATGCAAATAACTTCTTATA
GAGAAAGGTTAACAAGCATGCGTTTTGTTTCTGCCTGTCTATGAATATTCACTTACCATT
TAGTTTATATATGTTTACATTTTTAAGGTCGTAGTTTGCGCAAAACTTTGCATTATACAT
ACCACATGGAAGGAAGATCCAAGCTGTCACTTTAATGCACATAATAACAGATAAGTAGCG
AATTGATAAGCCACGCTGGCTATAGCTGTATGGTACTACACTTATCAATAAACAAAAAGA
TGTGAAGAGTTAATGAGGGCATGGGAATTAAGCCAGCACATGGGTGGCTACAGACATCAT
GCCTGATCAAGATCATGGCAACACATATCCTACTCCCTCCGTTCCTAAATATAAGCCTTT
TAAGATATTTCACTACGGAGTGAATCTACACTCTAAAGTATGTCCATATACATCTGTATG
TAGTCATAAGTAAAATCTCTTAAAAGACATATTTAGGAACGGAGGAAGTAAATGGTAGCA
CCGCAGCACTACATGTTTGCTTGCAGACCTCCTGCATGGATCGGAAAAAAAAAAGAGATA
ATCGAGTCTTTGCTTCGTTACTGTAACATTGCAGACCATACTAGGAAAGTTTTTCATTTC
ACAACTTATAAGCACAAAAATGATGCTATTCCTATGCATCAGGTTTTCTTCTGCCTCATA
AATCATGATGCCTGGCAGTACACATAGTTCTTTATTTTGAAATGGTGGCAGTACATGTAG
TTTTTTTAGTTCCACTTGCATCTATGCAAAGCTCTGTTTCATCACATGCATACCGACAAG
TTTACACCCCACGTTCAACTGATACAGTGAACAGCTAACCAACTTCACATCACCTGCCAA
TCCAAATCCAAATTAACAGAACATATGGATATCTAGATTTAATGGTTATTAAGGCACACG
ATTTAAAAGAGGAGGAGGGGGGGGGGGGCATGCCATTTGAATGGAAAGCAATGGATGAAA
TCTCAATATAAAACAAGAAACAATCTGTAAAGCAAGAACGGGAACTATTCCATCCCTATG
ATAATTGTGCATCATGCTGATTGCTGAAGGGGTCATGGTCAAAGGGCAGGACACACACAC
AGAGGGAGATGGCCCACTACTATCAATTTACTGTGTTGCCCATGCTCCGTTCAAAAAGAA
ATCACAAATGTGTAGTGGTTAAGCCAATAGGCACGTCGGCAGATCTGAAGCACATTAATC
GACTGATCCATACGTCAATGGAATGACAAGTAGTGCATCCCGTGACAACGTTGGCAATCA
AACTAATGTTACTTCACAAACTACCAAGTTTTAAATTGGCCCTACTACTTGCCTTAGATC
TAGACCCAATGAACTAAACAAAACAACACCTGCACCCATGTTAAGGTCCAGCTAGTGTTT
CGACCATAAAATATTGTTTTATCCCTAATGATACTAGTGGGGGCCAATCAACATAGCTGG
CGACAAGGAGCTCCTCACAAGAACCTTATTTTAACAATATTACTATGTTCACAAACTGAT
CTTAGAACGACTATTATAAACTCAATCCGAACACTACAAATTTATAATGAACATATTTTC
ACATGCACATTTTTAAATTTATAGTGCCAAGACTAAGTTTGCAAAAGTGGTTTGTAAGAT
CTGATTATGAGTCTAATATTGTTGGAACTAGAACTCAAAACATTAGCGAAAATGCTTCCA
ATTGGATGTCTATGTTGGTTGCCTCTCCTGATAAGCCGGTGCAGAGAGACCCAACTACAC
ATCAGTAACACCACAAGCCAAGCAAATGGCCAAAGAGGAGAGGATCAGAACTTTTCTGAT
CCAACACTCATCTTTCCCATGAAGCTTCTCTTCTTTATGGACTGCCCAGTTGCGAAGTAG
CTTGTGGGCCTTTCAAGTCTATCCCTGTTAATACTACCTATTCCAGGAGAGGAAGAGTCA
TTGCCAGCACAGCAAATGTACGACTCTGGTAGCATAAAGTACAAAATTGCAACCTGGACT
TGCCCGTCATAGTATTGACAAGTTCAAAATTCATAACAAGCTGATACACTGGAGCTGATC
CCGTAAACTCTATAATGTATGAATAAAAAATCTAAACCTTACAACTCTATAACATGCATG
ATGACACATCTATAATTCAACCTGGCTGGACCGCTGGAGCACATCGGGGGGCTAAATTTA
GAGTTGACAATTAGTACCATTTTCTGAAGTCATTGCTATTTTACAATGCCCCCGATTGCT
CTCGTTAGAGCCCATCCAGTCATGAAATTTAAAAGAACAAGGATTTACCAACTACAGAAC
ACATAGGAGTGGCAAAATAGGGTAGCAGATATATGGTAGAATATTTTGTAGTATTGCACA
TTAGCAAAAGTGCTGCAGTCAAGTGTCCAAGTTGGATGGTTCTCCGGATAAACCGGTATA
GAGGGACCCAACTACATATCAATAAGAAAACCACAAGCCAAGCAAATGGCCAAAGAAGAG
TGATGAGCAGAACATTTCTGTTCCAATGTCTTCCAATTAAGCTTCTGTATTGGATACCCA
GAGGGGGTGTGGCTTGTGGGCCTTTCATGTCTCTATCCCATGATAATACCACCCCTTGGT
GGAGAGGAAGCATCATCGCCAGCACAGCAAACGTATCATTTTCGTAGCCTAAAGTACAAA
TGTGCAAGCTGGACTTGCCCCCACATAAACTAGCAAGTTCAAAATTCATAGCAAGTTGAT
GCACTGGAGCTGCTATGCTTCTAGCGTGGGCAATTCTAAATCTACCGGCTCCTCACACAA
CATGCATGCTGACACATCTAGACTTGGACCTGGCTGGAGCACGTGAGGGGTTAAATGAGA
GCCTATTCTAAGTCAATGCGGCAGATTGTTCCCGTTACAGCTCATCCAGTGTGTAAAATC
TCAAGGGATTTATTACTATCTATATATAGGACGCATAGCAGTGAGGAAAAAGCGTGGCAA
ATATTTTTGTAGTACATAGTCCAAAAAGAATCCCACCATACCAAGTTTCCAACGGTGCCC
AAGTAAGAACAAGAGGTTAACCACGAAAGCTTTAGGCTCAAATGTTTAACTATTCACATT
CGGCATTTCTCAAAGAAATTTGTAGTAACTCCGTGCACTGAGCAGTAAAAAAGATGAAAC
ATGCTACTTGAAACTTCAATTCGTTGAGAGTTGTTCAACACACTGCGCTTCATCTATCTG
CGTTTTTTTACCAAATTTAACACACACAAAAATCTATTCATATGCAGGAGGATCTCAAAA
TTCCAATCACATTTTCTGAAAATGTGGCCACCAAGATATTTTCCAGCCAACAATCAGAGT
AATGCAGGCGCAATCGCGTAAGAGCACACACCTGAATCGGATGCGTTTGAGGTCGTTGCC
ACCTTGCGGCAGCGAGACGAACGTGATGAGGACGCCGGGCTCAACCTGCGCCACCCACTC
CTTGGCGTTGTCTTCCTTGCCGCCGCCGCCGCCGCCGCCAGATGACATCCCGTCCTCCTC
CTCTTCCTCCTCCTCGTCGCCGACGGGGAAGTCGGTGCGCGCGCTCATGGACGGCGTGGC
GTCCCCGCTGGAGCCGCCGCCCGCGGCGCGCCGGTACGCGTAGTGGAAGCGGTCGGAACC
CGAGGCAGCGTCGGAGCCTCGGAAGCCGCTGCCGCCGCGGTGGTGGTACGGGTGGTGCCG
CCCCGAGGCCCCCGCGGAGGAGCCGGCGCAGGGCTTGCAGTGCCGGTACGCGCCCGACGC
CTTGAGCGCCATGTCCTTGATCTGAACCCAAGAAAATCCCCCGTCAATTCAGTCCCACCC
GATCTGATGATTACGACCTCGAGACAAGATTCCAAGACCTAAAAGGCCGTGACTTGCAGA
CAGATTCAGACGGATTAAAAAACTCGTCGTCCCCTTCCGATGAACAGAGCAAGAGAAACA
AAACAAAACAAAAAATCGACATTTTCTCAAGCAGGACTCCAGTCGCAAGAGAGAGGAAGC
GCAGTCCCGAGAGCCCACCTGCGCCGTGAGCGCCTTGATGGCCTGCCGGGTGCTGGGCGT
GGCAGCGCCCCCCACGCCCAGTCCGGCATCGATGACGTCCTCGTCCTCCGGCGGCTCGTG
GAGCGGCGGCACACCGCCGCCGCCGAGCTGCCTGGAGCAGGCGATGCACGTGAGCATCCC
GCCGCCGGCGAGCACGCGCCTCTGACCGACAGACAGAGACAGACCCTCCCGCCCCGGAAA
GCGAGACCGGGAGCGGCGCGCGGCCTTAAATGGTGGGGCGGCACGTAGCGCACGGACGGC
GACACGGACCAGGACGTGGCGAGGTAGTACACACGCGCGCGCGCGCACGCCCCTCGTCGC
CTCCGATCTCGAGCTCGAGTTAAGGGCATTAATGGCCGGATTATAGTATATCGCGGGTTA
ATGGCAGCAGCCGCACTGCGGGCGGCACGAGCCAAGTGGGGTTTAATTTATGGAGCGGCT
GCCTGCGCAATAACCTCGTATAGCNTACACTCACCGAAGTTATACGAGGGGGGGGCCAAC
CAACTA