morexGenes - Barley RNA-seq Database

Contig contig_39129
Source Contig contig_39129
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39129 (8694 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39129

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54420	1	1871 bp	MLOC_54420.1	Available	Available	LOC_Os04g25980.1, FRAME:+2, EVALUE:0.0, 13104.m02454 protein cytokinin-O-glucosyltransferase 2, putative, expressed
CDS Structure of MLOC_54420

Contig Sequence (8694 bp)

>contig_39129 8694 assembly3_WGSMorex_rbca.fasta
AAAGGTTAGGCCTTTAGTCCGCGTTGTAACCGGGACTAAAGCCCCTTACGGGCCGGGGCT
AAAGGCCCCGTCCCACTAGTGTTAGTTGTGTGACACATAAGCAAAAATGTTTATTTGACA
TATATGATACTTCCTTCATTTTAAAATATAAGTCTTTTAAACGCCACGGACTATATAAAA
AAGTATATAAACATATTTTATAATATAATTTTTTTTTTTTGTATGTAATTTATAATGAAT
CGTGTAGAAAGAGTATATTTTAAAACAGAGAAAGTAAGCTGACTTTCGGGCGATCATCGA
CATTTGTGAGGGCTTCATATACAAACAGTCATGCACCCCACCCCGCAACTACCAGAGGTA
TTATGTACATTAAAACTGTTTAGTTGTCAATTATACTCTCTTCTTATAGTAATCTTAATG
ATTAGCATTACTGGTATTTTCCATAACCACTTGCAGAGATGCAAGTGAAGAAAGTCGTCG
TCGCATGCGACAAATCCAAGCAGAACGCATCTTCTCAAAAATGAAAGAGAGAATCTTCGG
ATCCCGGCCATGCCCAACAAACCCAGGCTAAAACGCATCTTCTGAACATACCCAGTAACC
TCGGATCAGTTCATTAGCAAAAATAAAAAATGATGGAAAAGTAACCTCGGATCAGCGGAA
AGTACACATTTGAGCTAGAGCTCAACTCCACCCGCGTAAACAGTAAAATAAAAAAAATAA
AAACATTTTCAGAAAGTTTTGATTTTTTTATGAACTTTGAAAAGAAAAATTAAATGCTTG
TAAATTTTTAACATGAAACACATTTGTGTAAGGCATGAAAAAAAAATAGTATTTCAGAAT
GCTTTCGAAAGTAGCATTATTAGAGCATCGTTTTATTTTTCTTTCACACATTTCTGGAAT
GTGATCTCATGATGAATATTTACAAGCATTTAAAACAAAATTCCTCTTAGAAACTTTATT
TTTATTTTGAATATTTTTTAAGTTTACTGTTTATGCGGACGCATTTGAGGTCAAGCTCGA
ATACTTCACGTCGCCGATCAGCTCACTATATATACGATAGCTTGCACACGCCATACTACA
TACGCACTAGCTGCACAGACGCCGCACAACATTCTACAAGACACTCCCAACACGCGCAAC
AGTACGTAGCTGAGGCGGCATGGGGTCGGAGGCCTGCCATGAGAAGCCGCATGCCGTGAT
GATCCCGTACCCGGCGCAGGGCCACGTCACGCCCATGATGAAGATGGCCAAGCTGCTCCA
CGCCCGAGGCTTCCACGTCACCTTCGTCAACACCGAGTTCAATCACCGCCGCCTGCTCCG
CTCGCGCGGGGCGGGGGCGCTCGACGGCGTCCCGGGCTTCCGCTTCGCCGCCATACCGGA
CGGGCTGCCGTCGTCCGACGCCGACGCCACGCAGGACGTCCCCGCGCTCTGCAACTCCAC
CATGACCACCTGCCTCCCCCACCTCCTGGCCCTTCTTGCCAAGCTCAACGAACCAGGCTC
CGGGGTGCCGCCGGTCACCTGCCTTGTCGTCGACGGCGTCATGTCGTTCGGTTATGACGC
TGCCAAGGAGATTGGCGTGCCCTGCGCGGCCTTGTGGACGGCCAGCGCGTGCGGGTTCAT
GGGCTACCGCCACTACCCGCAGCTCATTGAGTGGGGTTTCGTGCCTTTCAAAGGTACTCT
ACTGCTACTACTACTAGCTCGTATATACTGTATGTACTCTAGATCGTACCTACTCCCTTA
TTTCTAAATAATTGTAGTTAGAGAGAACTAAATTAGGGTGTAGTGTAACAAGGGTGGTTT
GGTTGCGTGCAGACGAGGCCCAGCTCACGGACAAGGCACACCTGGACACGGTGGTGCAGG
GCGTGCGCGGCATGTGCGAGGACATGAGGCTGCGGGACTTCCCGTCCTTCATGCGCACCA
CTGACCGCGGCGACATAATGCTCAACTTCTTCGTGCACGAGGGCGGGCGCCTCTCGCTCC
CCACCGCCGTCATGATCAACACGTTCGATGAGCTGGAGCGCCCAGTCCTGGACGCCATGC
GCGCCATCCTCCCGCCCCTCTACACCGTCGGGCCGCTGCTCCTCCACGCCCACCACGCCG
TCCCCGACGGCACCTCGCTCGACGCCCTTGGCTCCAACCTTTGGAAGGAGCAGGACGGCC
TCCTTGACTGGCTCGACGGCCACGGCGCCAGCTCCGTGGTGTACGTCAACTACGGAAGCA
TCACCGTGATGACGAACGAGCAGCTCCTGGAGTTCGCGTGGGGGCTGGCCAACAGCGGCT
ACCCTTTCATATGGAACATCCGGCCAGACCTCGTCAAGGGCGACACGGCCGTGCTGCCGC
CGGATTTCATGGCCTCCATCGACGGCCGTGCCATGCTCACCACGTGGTGCTCGCAGGAGA
AGGTCCTCGCGCATAAGGCCGTGGGAGTCTTCCTGACGCACTCCGGGTGGAACTCGACGC
TGGAGAGCATCTCTAATGGCGTGCCTATGCTCAGCTGGCCCTTCTTCGCGGAGCAGCAGA
CCAACTGCAGGTACAAGTGCACGGAGTGGGGGAACGGGATGGAGATCGACGGCGAGGTGA
AGCGGGAGGTCCTGGCGGCGATGATACGTGAGGTCATGCAAGGGGAGAAGGGGCTGGACA
TGAGGAGGCGTGCGGCGGAATGGAAGGAGAGTGCGGTTAGAGCCACGCTTCCTGGTGGAT
CCGCGGTGGTCAACCTCAACACGGTCATCCGTGACGTGCTCCTCGCCAACTTCAACAACA
AAGATGGTGGGCCTAAGTAATACGTATGTTAAGGGTGGAGCCATGGAGGTGGAGGGGATT
TCATTTCAGTGAACAAACCCAAAGCGAATTTCAACATGCATGTGCATGTTGGGAGTCCAA
CGTCTATCCATAGGGCCGTGTGCAGAAAATTGAGGCCCCGGTGCGAACTCCAAAATGGGG
CCTAAAATTGAAAAATGGTGCTTTCCTTTGTACTCCCTCCGTTCAGGCTTATTAGGCTCC
ATTATGTTTTGAGTGAAATTTTGATAATTTATTTGACTTAAAAAGTCTAAAGCATATGCT
ATGAAAACTATATTGATGGATTTGTATTTGATTCCCATGATATAATTATTATGAAATATA
ATTTACATTTTCTAAGTTCAAATTCATGATCAAACTTTGGAGCAAAATGAGAGGGGCCTA
ATAAGCCCATAGGAAAGTTGTAGTCGACGAAGTGGCGGAGGATGACGACTCAAATAAAAT
AGTGGCGGAGGACGAATGCTTTTCTTAGTGTGGCGAAATTTCTAAAATGGATCTAAAACA
TCATAAAATATATAACACCATATGTATTCTGATTTGCTCGTATGAATGTAATAAAACCAA
CTAGATTCGTAGGAGATATTTCTTACAATATTATTCACTAGCACCGATTTATTAAAATTG
TACAATTGACCTGTCAAATTAAGATGAACCAATTCATCTGCTCATTCCGCTGTTCATCTC
CTATAGGACCCGTACACAACGCAAACACATACGTGAAATTATAGAACTACCTGTCAAATT
AAGATGAACCAATTCATCTGCTCATTCCGTTGTTCATCTTTTATAGGACATGTACACAAC
GCAAACACATACGTGAAATTATAGAACTAACCTGTCAAATTAAGATGAACCAATTCATCT
GCTCATTCCGCTGTTCATCTCCTATAAGACCTGCACACAACGCAAACACATACGTGAATA
CATGATAGTACATCATAACTGCGTGTTTGCCTGCTTGCCATCGACCGATTGCGTTAGGCG
TGTGTGCCGCTTTTGGCTTCTGCTTCTCTGCCATCCTGCGCTTGGTATGCGAGGGTTAAT
GGAGCCGGCGCCGCCGCCGTTTCGACGATACGATTGATCAACACTATCACTCGTCTTTTT
ACGCTACCACCATCGCTGCTTTTTTTTGAGTATTTGTAACCTTTATTAAGTCTGGATGGT
CATAGGGATACATACTATATCGGGCGTAGATAGAAGCCACAAGTGGTGCTCGGGAGACAA
ATAATCCACTGCTTTAGCAAGAGCATGCGCCTCAACATAAAACTTCCTACCGTCATGTAC
AAAACGAATATCATGAAAGGAGGTAGACCGATGGTTTATCTCACTGAGAACTAAGGTAAA
GTGACACGGGACTTCCGATCCGATCTTAGAGATTACAACAACACAGTCCGAAGCCACACA
GATCGAGTTGAGGTTGAGATCTTCCGCCAGAACGAGGGCTTCATTGCATGCTTGCGCTTC
CAAGGAGGGCGGATCCATAAGGCCATCAAAGACTCGTGTTGAAGCTCCCAAGAAGACCCC
TTCACGACCACGACAGATCACCGCAGTAGCACCCCGCCGCCTGTACCTGGACACACCCCC
ATCAGCGTTGAGTTTAGCACCCAGGTCGACAGGTGGGAGCCAGGCAGAAGTTGATGCGCT
CGACCTCGGGCCGACAGTAGAAGCTAGAAGTTCCCTCGGCCGCACCTTGTGCGGGCGAGA
GTGGCTCATGGCAAGGCAACTGATGTCATCTAGAAACTTTGTGACGAAGGTGAAGGTGCT
GAGAGGGCTTTGGAACTGATCATCATGTATGTCCCATCGTCATGCCCACCAGTTTGCCCA
CATCGTAACCAGGGCTTGAGCCACTTTCCTCTCTGGTAAAGTGTCCAAGAGCCAAAACAT
CCAGAATCTAGCATCCTCGGTACAGTTGGAGATCAAAATCTCTATCAATTCCTAGTCTGC
CAGAGCCCACACACAACGAGACATGTGATAGTCAAAGAGAGAATGTCTCCACACGTCTAC
CGCCGCATGGCAGATAGAGCAAGCCGACGTGTCTGACATCTGCCTATGATTCCTCACCTA
TCCAGTATGAATGGATGACTTGGCTAGCTGTCACGCAAATTTTTTGATTTTCAATGGGAT
GTTCAGTTTCCATAGTTTGCCCCACGATTTCTTGTCCGCCTCGCACTCGGAGTGCCCCGG
GACATGCTGCAGCCAGTCCTGCTTGGTAGAAGATGACAAACGGTAAGCAGACCGAGCCGA
GAATGTGCCCCTCTTATCATAGTGTGAGGCCCAAAAATCAGCTTGGACTCGGGTGCTCAA
GGGGACATTGAAAATTGCCTCCTTTTCCATTGCATACAAATGCTCATCCGAGGTCTGAAT
GTTCCAACACGCATAGGTGTGGTCAATCAGCTCTGACACACGCTGTGGCCGGTTCGTGGT
CTTACGGCAAACCGGTCTCAGCTTGTGGTCTCGCAGTATCCAATTATCATTCCAGATACT
CGTCTCCCTCCCCGTCCCTATCCTCTTGATGATGCCCATCTTTAGAGTGTCCGTCCCTCA
TAGATAGAACGCCAAACCTATGACGGGTTACTCTCCAATTCGGCCTCTAGGACAGAACGG
TTAGGGTAATAGACTGCCTTCAGAATTCGAGCCCTCAAGGATTAAGTTTCTTTCAGCAGA
CGCCAGGCTTTACAAGCAAGCAAGGCTAAGTTGAATAGCTCAATGTCTCGTAAGCCCATG
TCGCCCATGAGTTTCGGTTGCGTCATGACTTCCCACAAGGCCCATGCCATTTTCCTTTTT
TCCTTTCTTAGATCCCCACCAAAACTTCCGAAGCAGGCTATTGATGTGTTGGTACAAACC
CCGCAGTAGATTGAAGCAGACCATGGAATAAGTGGGTATTGCTTGCACCACCGACTTAAT
CAGAACTTCTTTGCCAAAAACCGAAAGGGTCATTTCCGTCCATCCTTGCACCTGTTTCCA
GATCCTATCCTTCAGGTACCTGAATGAGCCCTCCTTGGCTCCGCCAACATCTGAAGGGAA
TCCTAGATACTTGTCTCACAGTTGTTCATTTTGAACGTCCAAAACTTGCAAGACTTCAGT
TTTTAGTTCTGCCGAGCATCCCTTGCTCAAAAAGATTGACGGTTTGTCTCTATTGATACG
CTGTCCCGAGGCATCACAATATCTCCACAACAATGTGTTTACCCTCCGAGCAATGGCGGG
CGTGGCATCAAAAAAGAGCAAACTATCATTAGCAAAAAGGAGATGATTGACACATGGTGC
ACCTGGGGCTACCTGTATGCCATGGATCCTCTCCTCTGGGCGAGAGATTTCAGCAATGAA
GAGAGACCTTCAGCCGCGCCAGCAAAAAAGGTAGGGCAAATTGGGTCACCCTGTCGTAAT
CCCCAGGTTGGCTTGAACTCCTCTAACTTGCCTCCATTGAACATGACTGAAAAACAGACC
GATGTCACGCACCTCATGATCGTTTTAGTAAATCCGGGGCTGAAGCCAAGCTTTAGCATC
ACCACCTTCAAATATGGCCATTGAAGCCTGTCATAGGCCTTCATCATATCGAGCTTTAAA
GCACAATATCTATTTCCCTTTATTTTCCTGGTTTTCATATAATGGAGACACTCATATGCA
GAAATAAAGTTGTCAGTAATCAGGCGGCCATGTACAAATGCAGATTGTTCCTCTGAGATG
ATGTCGGGGAGAATGAGTTTGAGCCAGCTAGCCAATACCTTTGAAGCGATCTTAAAGATC
ACATTGCACAGGCTGATCGGTCTAAAGTGTGCTAATTTTTTTGGGCTAGCAATCTTGGGA
ATAAGAACGATGAATGTCTTGTTTATCTCCTCCGGTGAATCATCACCACTAAGAACTCTC
AATACCATATCGGTTACCTCATCACCACACAACTCCCAGTGATGTTGGAAAAAATGCGTA
GGAAAGCCATCAGGCCCCAGGGCCTTTGTGGGAAACATTTGGAAAAGTGCAGATTTTGCC
TCCTCCTTCGTATAAGGTGCAGTCAGCATACTATTCATTTGGTCATCCAATTTCACCGGG
ATGTGAGAGAGGACTTCTTCCAATCCTATGATATTTCTCGAAGCATATATATTCTCATAG
AAACTTGTTGCCATGACCGCCATTTCATCCAAGTCAGACGTCATAGACCCATATGGTTTT
TGGAGCTCCAAAATGCGATTCTTGGTTTTCCTAGCACTAGCCTTCTTGTGGAAATATTTG
GTGTTGCTGTCACCTTCAGAGAGCCATTGTACCCGGGAACGTTGGCGCCAAATGATCTCC
TCTCGGTAGCACAACTCGGCCATCCTGGATTCGACCTATTTCTCTTTCATATCAGGTCCA
ACCCATAGTGGAGCTGCCCACATGACCTCAAGCCTCTTGCGAAGTTGGCGGAGTTCAGAT
CGGACTGAACCAAAGGCGCAGCGCCCTCATTGATGTAATTCCCTAGCCAAATTAGCCAGC
TTCTCTAAAATGCCCGAGACCGATGCAACTGTACCATTGGCATCCCATTCATTCTGCACT
ACAACTCCAAACCTGCAATCACGCTTCCACATGCATTCATAACCGAATGGCCGTTGAGCT
GCACAAACGCTATCATTGGCCAACTCCGTTTCCAACAGAATAGGAGAGTGATCTGACTTA
ACAGCCATGAGATGCTCTACACTGGCAAAGGGAAATAGAGTGGACCAGCACGCCGATGCA
AGAGCTCGGTCGAGGCGAACCCAACAGTAACAAGGAAGTGAGCCTAGCTCACTTGGCTAG
AGGAGTGGATGTACAACCCAGCCACCCAGGTTCAAGTCCCCACGGGCGCGCATTTGGGTT
CTTATTATTTAAAAAAAAACTCGTTGTGGGGTGTTTCCCTTACAGTTTTCCTTAAAATAA
ACAACAGTAACTACCACAAGAGACTTTCTTCTCCCACGTCCAGTCAAAGCCCGTGTAGCC
CAAGTCCTCTAGGCCACACATATCAATCGCCTCGTAGAAAGCCTCCATCTACGCATTATC
TCGTTCATTTGGCCCCACTTGCTCCTCTTTCCGAAGGATCTCATTAAAATCACCAATGCA
CAGCCAAGGCAGGGTGCTCTCCCCCCTCAGACGCTTTATCATGTCCCAAGTGTTGTGTTG
AAGACTCCTGTTTGCTTCACCATAGAAACAAGACAACCGCAACTGGTCTTTCAAAGGTTC
ATGAACCCATGCATCCACATGGTACCGAGAAAAATTCTTTATTTAAATATCCAACGAGTT
TTTCTAAAAGATACAAATGCTGCCACTGCGACTTGAACTGCCTACAACAAAAATAAAATC
AAAACCAAGAGAAAAAACAAAGACCTTCAACCTGATTCTTTTGTAGATGAGTTTCGACTA
AGCAGAGAATCGACGGCGAACACCTCCCCACGAGATCGTAGAGTTCTCTAACCATCGCAG
GATCGCCTATCCTGTGAAAATTCCAACAGAGTGTTTTCATTGGTCCTGGCGGCGCCACTA
CTCGGAGCCCGACAATAATGCCAGCTTTGTATTCTTCAAAGGAGAAGATCCTTTCTTTGC
CTTCTTCAAATCCCTTGAGGACACATATTCCAATGGAGGAGACGGAGTAGCAGACTCACT
TGCGGGTGTCAACCCCTCTGCTCCTGTCTCCACGGCCACCATCGCATTACTGAGTTCAGT
AGTGGCTTTTGTCATCACCATGGTGCTCCCCTCCGTCGAGACTTTGTTGCCCAGAGAAAG
GGCATCAGCCAGGTTGCGTCTTGCTGATGTATCGTTGCTGCTCTCAGTACTTAAAGGTGC
CTTAGGCTTCAGAGGGATGGTTACATCTTCGCCTAGGTCTTCTCCCTCCTCAAAGCCAGC
CTCATGGGATGATCTCTTACGTTGGGCTCTATGTGTTCGGGAACGTTGCATGGG