Map Locations of contig_39121 (3901 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39121

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54416 1 541 bp AK251959.1 Available Available None





CDS Structure of MLOC_54416






Contig Sequence (3901 bp)

>contig_39121 3901 assembly3_WGSMorex_rbca.fasta
TCCAATCAACCGAAGCTAGCCGGCTGAAGCGTATTCATACAAGGGCTAATCGATCAAGCT
GCTAGTGTGCTTGTTCGAGTTAGCTTTGCACGTACACATACGTGGTGCTCCTGGGTGTTT
TGATCTACGGTTTAAAAGCCAACAGTACCATTTAGAATTTAGAGCCATGTCCAAAATTTG
AACTGATTAAAAGTTTCAAGCAAAGGGTGCTTATCATAAAAAATGTAACCAATATGGTAG
TCCCAGAGTAAACAGGTACAGTAGCTTAAAATAACTTTTGGGCATACCTTTCGTAGAACA
AAAGGTCTCTTCAGCTCAAGTTCTAAAGTATGAAACTGGCCAATCTTCACGTGATCATTC
TCAGTAATATTTTTGCCACGCACTCGCAAAACATTCCCCTCCTTGTCATAATCTACAGAC
TATGCCCAAGATAAAGAATCATGTCAATTAAGTTAGAAAAAAATATAATTTTGATTTTGT
TATAGCATTGGAAAGAACAATAAGCGATGTAAGGTACTAATTCGTAGGGATGGTGCCTTA
TTAGCTCTGCTCACTGTATTTTCGAGTTCTCACGTGATGATGCTTTTCAGGTGCCCATTA
TACAGCTCTATTATAATATTATATTTTTTGCGAGGAAAGCGCTATGGTATTATTCTAACA
CACTTGCAGCAACATGAATATAAGGCGTAAACAATCCAATCCCTTCTCTCATTTTCAGGT
CACGTATTATTTGACCCTTTTCAGTACATATCCGACAAATATGCTCTAGAATCAGTAATA
ACTCTAAGCCTTTGCAGCCAGTACGCTAATCCCCTATGATTTTCCATCTGTGATGTCATG
GAGTACACAGTCATAATGACGATGATGCCTAAGGTTGGAAGCAAAATGGTTACAGCTAGA
ACCACTAAACAAAGCAAGTCGACACAGATAGACAGACGATGTCACCTCAACTACAATTTC
CAACTTGAGCTTCACGCGCTCCGCATCACGCCCACCAGAAGCAGAATCCCTGAGAACTTT
CCTGGAAACGAACAAAAGAAGAAGATCAGTTTCAAGAGGACTATGAGTTTCCAAGATATA
CTGGACAACTGGAAGGCCCTTAGACAGAGGCTTGAACTTATCAACAACTATACTACCATG
GAGGAGAAAATCACTCATCACATCACCAGTGGTCTACAATCCCCCAGAACCACAGCCAAG
AGCTGAGAAATACCCATCATAGCCGGCTCGACCTTTTTTCCCCTTCACCTGGCAAACCAT
GCCTCCCATGTGGGAACCTACTCTAACTCTGCCTCAACTTGCAATTGCCAACCGAGATCC
ATAGGAGTACATCAAAACCACTAGCAGCCAGAAAGTGCTAAATCGGGGAGAGTAAATTAT
ATATATGGCGGCTGCAGCATCCGCCAGAGGACTCGGTTACCAACCACTAGCACAGAGCTT
ATTAGCTGAAGTGCTGAACCAAAAAGTAAAGCAAGCACTATTATGATGCAAAGGGAGGAA
CTCACCGGACAGTGACGGCCTGGAGGCTGTCCCCGACGGCGATGAGATTGTACGCGTGCC
ACAGGTCGTCCTCCTCCTCCGGCAGCAGCTGCGCAACCACAAGAACGGGCCAGTCAGCAG
CCACGCCAAACAGAATCCCACCGGGGGGCTAGCCCGGCCGGGCGGGGCGGCTCGGCTCAA
ACAGAGCGCGACGAGGGGGGGAGGGAAGGGGGGACCTTGGCGGAGCCGGGCCCGTTGCGG
GCGAGATTGCGGTGGACGAGCTTCATCGTGGCGGCGTCCGCCGGAACCCGAGCCACCAAG
GCTTTCCGCCGGCGACTCTTCTTGCTGTCGGAGACGGCGGCGAGTGGAGGAGAGAGAGGA
GAAGAGAGGGGATTCGCGGCGGCAGCGAGGGGAATTAACCTGCTCTCTCTCTCTAACTTT
TTTTTCCTCCTCGGTTTATGTACCTTTTTGGGGGAATCCTCCAGATTCCTTGTGCTGCAG
CGATTCGGCCTCGGGCGGCACGAGGGGAGATACGGCCCGTGACTGCAAGGCCTGCCTACA
CGACGCAGGCCAAGAAGTCCTAATAAAAAAAGGAAACGCGGCCCAACAGACGTACCAGGT
AGGCTCACGACCACAGTCGGCCCAGCTAAAGGCCGATGCCCAGTACCCCTTGGAGAGGTC
ACTCTCTCCTTCTCGGGGATGACAAGTGGCAATCTGAAAGTTTGCCCTTTTTCCATAGTT
AGATTAGATTCCTCTCAATCTAAAACTAGACTCAATGCTAATAAATTAAATGTACTTTTC
TTTCAATAAAAACTTCAAAAAATGGAAGGAAAAAACCAGAAACATTTTTTCCACTTTGCT
TCTCGCGAAAGAAAATATGTACCTTCACGAAATGCAAATTCGTGTCTCTCATAGAAAAAC
ATTTTTCTCTGTGCCTCTCGTAAACGAAAAAAACATGTTTTCCTTTTTTTTAAGAGGCGC
ATCTCCCGAAACAATATGTATCTCTACAAAAGCAAGTTTATGCCTCCTGTGGAAGCAAAA
GAAAAACACATGTTTTTTTCTTTTGGAGAGGCACAATTGTGTCGATCACAAAAAGCAAAT
TTATGTCTCTCATGGAGGCAAAAAACAATTATCTTTGTTTTTCATGAAATCAAATATGTG
CCTTCACGAGAAACAAATTTATGTCTCTCATGGAAGAAGAAAAGTTTTTCTTCTTTGACT
CTTCCGTAAGAAACTCTTTTGCCTTTTGTAAAAGGAAAAAAATACATGTTTTCCCTATTT
CGTGTCGCGCTATATGAGTGTTCCCTTCGTATTTTATTTTTTATTTTTTTTTGCATGCGT
TTTCGCCTTTTTTGAGTGGTTTTTTCCGGGTTTTTTATGTTACGATTTTTCAACGGCCTT
TCGTAACTTTTGAACGGGAAAAAATTTCGCGAAAAAACGTGTTTTCGTTTTTTTACGTGA
AAAAACTCGTTTTTTTTTTTTTCGAGAGGCACGGTTTTGCTTCAAGAAGAGGCACGGGTT
TGCCTTCATGAGAGGCACGGCCGTGCCTCTCGGAAAGGAAAAACATAGACGCATTTTTTT
TGTGAGAGACACGGTTTTGCCTTCGCNNNNNGCACGCCCGTGCCTTTCGGAAAGGAAAAA
AACATGTTTTCTGTTTTTCTACGAGAGGTATGGTTTTGCTTCCGCGAAAGGCACGGTTTT
GCCTTTGCGAGAGGCACCTCTTCCAAAAGGAAGAAAATGCATTTTTTGCTTTTTGTTTTT
TGCGTGAGGCACGGTTTTGCTTCCGCGAAAGGCACGATTTTGCCTTTGCGAGAGGCACGC
CCGTGCCTCTTTCGAAAAGGGAAAAACGCGTTTTTTGCTCTCTCTTTTTTCGCGAGAGTC
GCGGTTTTGCTTCGGCGAGAGACACGGTTTTGCCCTCGCGACAGGCATGACCCGTGCCTC
TCAGAAAGGGAAAAAACGTGTTTTCTGTTTTTTTCCTATCGCGTGAGGCACGTTTTTTTC
GTCCGGTTTTTTCTTCTGGTTTTTTCATGAAAAAAAGTTCATCAAAACCTATCAACATGG
ATCTAGTTTTGAAGATGTCGACACGAGAAAGCCAACGGTGAAAACGGTTCGAGATTTGAA
CGCACGGTTTATGAGATAAAACATTTTTAAAAACGGATCTACGAAAAAAGAGAAAACTTC
CAGGTTGCGACAAGTGACACGCATGCAGTGCGTCATTTGTTGCAACCCGTTGAGGTGGGA
GTAATCGTTGGAATGTGTACTCGTTAATGATTTTGCTATATTACTGCTGCGTCAGGCCCA
ACTCTGGCAAGCCCATGCAAATGGATGGAGGCCTAGAACCGTTGAAAACCCAGCTCTGCG
GCGGCCCATCCACTCGCCGCAGAGAACAACACAAACCCCTCTCTCCCTGGTCGCCGTCGT
C