morexGenes - Barley RNA-seq Database

Contig contig_39116
Source Contig contig_39116
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39116 (7348 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_39116

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54412	3	1663 bp	MLOC_54412.1	Available	Available	None
MLOC_54411	1	221 bp	AK358867	Not available	Available	None
CDS Structure of MLOC_54412

CDS Structure of MLOC_54411

Contig Sequence (7348 bp)

>contig_39116 7348 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGTCATCCTACGGCTACATGGCGACCGACCTAAATTTGATGTAG
TCAACCGGCGCCTAGCGCTGCCCTACCCTCGGCAAACACTAAAGTCTCCACACTTGTAGG
ATGACAGTAGGAGAGAACCCTGTTATCAGGGCCAGCCTTGAGTTTTTGGAGGCCCGGGGC
GAAACTTAAACTCAAGGCCCCAAAATATAATCATCAAACTTATATGAATTTAACATTGTG
CAAATATTAAGGTTTTCGCTTGTATATCATACCGCAAACAAAAAATCCAATAAGGATCAT
TGGTGTTTCATATTAAAGAAATTGTATGGCCACTCCCTTTGATCCATAAATTCACAACAT
TAACATTTTTTCTTAACTTATTGTGGGTTGAATTAACAATCCAACAAAACTAACCACTAA
CCATGCCTTAACATTTTATTATATAGCGTGTTGGGATATGTTATTTTGCATTTCGTTGAT
TAACTTTCCGGAGAATCAAAAGTAATTTTAGGTTGCAAGAACAGACAAACAGTCGTTTAT
TAAACAATTTAATTCGACAAAGATGGAATAGTAAAATATACATTTACCTCGATGCGACAG
ATTTAGAGCTCGTCCCCATACCTAGCCCTTAAGCCGTACACGGCTTTCTTGCTCCTGTTC
GGCCGCCATGGACAAGCTCTTGTAGCGACCATCATTGTCAGTCGCCCACCCATGAAGATC
TTCTTCTTACCGATGCAGTCTATGGGCGCGACGAAGTCACAGAAGACCTATAGAGTGGTC
ACCGGTGTGTTTCGCAGCGGGATGGAGCCTTGTCATTGTTGTCCCGCATATCTCTCTGGA
GCAACAACAAGAAGCAGCAGATGTGTGATGACATATGAGCCAATAATCTCGAGCGTGCCT
GTAGCTAACGAAAAATAGGAGGTCGTGTAATCAACCGCCGTAGTCACCGGCAGAGTTTAT
GATGTGGCTTATGATCTGCGAGGGACTTCCTTGTAGATCGTGGGATCAACAACAATCAAT
TACTAGATTACTACTTCCTTCGTCTCAAAATTCTTGTCTTAGATTTATCTAGATATGAAT
GTACGTAGTCACGTTTTAGTATTTAGATACATCTATTTTTAATAAACAAACTTAAGACAA
GAAATTTGGGACCGAGGTAGTACCACTTTGGGCCATGTCCGGTACAAAGGCCGGAGAAAA
TTTTGGGGGCCCTTAGTCTCGGGGGCCATGTCCAGTACAAAGGCCGGAGCAAATATTGGG
GGCCCTTAGTCTCGGGGGCCATGTCCAGTACAAAGGCCGGGCGCCCTGCCTGTTATACGG
TCTCGAATCCAATCTCCCGCCAAACGTAACTGCTTGCCGGCTTGGTTCGTCCTCCCTGCC
AAGAAGCCAAGAAATCACCGGTGCCAAACTGCCAATGGCGAGTACACGCGACGAGAGCAA
GCAGCTAGCCAAGCGCCCGCGACATGACGACGCCCAGGCTGCGCCGGCGCGCGTGCAGCT
CAACCCGGACGACTGCAACCTCGGTCAGTGCATGCGTTCCCATATCCGCCGAAATTCTCC
AAGCGCTCGCTCAACTCCGGTGGTCACGCGCCTCGTCTCTCTCTCTCCCCAGATTTCGTC
GTCGACCATGGCGGGCTCCGGGGGCACGCGCTGCACGGGGGCGGGTTCGCCTACTGCTGG
TCGGGGGCGCGCGCGACGGCGGGGGTCCGGCGCGGCGGGCGGTACTGCTTCGGGTGCAGG
GTGGTGGCGGAGCAGCCCGTGGAGATGGACGACACGGAGGCCTGCCAGCGGCACCTCTGC
CGCGTCGGCGTCTCAAGGGGGGACGACGCCGTGGGCAGCCTCGGGGAGGCCGGCGGCCAC
AGCTTCGCATTCGAGAGCACCGGTAAGCTCTCCCACGACGGCAAGCTGATGGACTACGGC
GCCGATTTTGGGGTCGGGGATACCGTCATCTGCGCGGTGGACCTGGATTCCAGGCCCAGG
GCGTCGATCGGGTTCTGCAAAAACAGAGAGTGGCTTGGGGAAGCCCAATCTTTCGATGCC
TTTTCCAGCGAGAAGGGGTTTGGCCTGGTTGATGCTCCTGCGGCTGCGGGGCCGAGGCCG
TGGGAGTCGGCAATGTTCCCTCACGTGCTTCTGAAGAATTTCATCGTGGAGATGCAGTTT
GGCATGGAGGACGGGCTGGAGCCGGTCAATGGCTACCAGCCCTGGAGCTCAGCTTTGGCG
CATGGCAATGGAGTGTATGGGCCTGTGTTTGCAGAGCAGAAGGAGTGTGAGGTCCTGATG
ATGGTTGGCCTCCCGGCTTCCGGGAAGACGACTTGGGCAGAGAAGTTTGTCAGGGAATCT
CCCGAGAAGCGCTTCATCATTGTCGGATTGAACCTTGCATTGGATCAACTGAAGGTTGTG
CTGCAAACCATACATTACATCCATTGGATCAATTGAAGGTTTCTACTTGGAGTTGTTTTT
TTTTCAGCTAGCTTACTCTTGTCTTGTTGTTGCAGATGTCAGGGCTGTTGAGCAATCCAT
TCTACGAAGAGCGCTTGGATAGCTGGCTGGACCGTGCTGCTAAAGTTGTGGAAGGATTGA
TGGGCAGAGCTGCAAGCGTCCCTCGCAATTACATTATCGACCAGACCAACCTCGAAAGAA
TCGCACGCATTCGTCTTTTGAACAACTTCTCCAGTTATGGTTGCAAAGTAAGTAGTTTTT
CTAATGTGTGTTTGCATTTGTTGGATGAAAAGTGTTGTTGGATAGGGTGGTGGTTCAAAA
TTCAAATGGATATGATGGGCAGGTGTAAAACTGAACCTTGTATTACTACCATACTGCATT
GTTGCAGATGGCTGTGGTTGTTTTTCCGGCGCCTGCTGAACGAAAATCCAGGTCATCGAA
GCGATTCATTCAAACGTGGAAGGAAGTGCCAGATGATACGGTTAACAAGATGGCAGGTAA
CTAGTGGAGTAAATCCTTTTCATCTTTTCATCAATGAGAGACGAAAGAAGCTTGCCAGTT
CAGTTTGTCCCTCTGAATCTTCAATACAGTACAGAACCTGACTCTTCCCCTTGACTGTCG
TACGTGTCTTTCTTTCGGGTGCCCATTACCTAACCCACCATCTAGTCTAACTAAAGCAGT
AACTCTCTAAGCTGAACCTCCCCGCAAGATTACATTACCATCCGGTCGGTGCCATATGTC
ATTTCCTGTAATCTCAACTGAAGAACAATGCATCACTCGGCCTTATTTTATACTTCTTCT
ACTAGTGATTGTTCCATGAAAATAAAAGCTTAAGCAATACACTTACAGGTTTTTTTAGGG
TGAGTTCCACTCAAAATTTCCCTTTCCCAAATATGCCATCGATTTATTATTATTATTATT
ATTATTATTATTTTTACACTCTAGTTGACCGTGTACAAGCTCTCTCTCTCAAGCATTGTT
GAGGAAATCGTTAACTGGTAACTGCTCGGTTGGCTCACGAGTAGGGGATTAATAGACTAA
TTGACAAGTTAATCGACCATTTAATCCATTAATTGGACGATTTATCACTTAATCGGCTAC
TCGGTGACCCTACGAGTAAGGATTAATCAGCAAGTTAGCTGGTTAGTCGGACGAATTCTT
GAACAGGGCTCTCAGGTGATGTCAGTTTTTTCAATAAAGACTATTCTACCCTTGGCCCAT
ATGTCAGAATTAGGAAACAAAGAACCTGAATTTTTTTTATGGAAAACGCTGCCTATCTTA
CCCGCACAGTGCCTACCCTGCCCGGCCTAGCCGGCAGCCGCACCGCCCCCCTCCGCATCA
CCGCCACCGCCGCCGCCGCAGCCGCCCTCCTCCAGTCCACATCACCGCCGCTCCCGCCTC
CTTCCGCATCTCCACATCGCCGTCACCTCCAGTACCGGACCCAGCCACCACATCTCCACG
TCCCCGCTGCCGATCCCTGCCCCCCGACCTCCTCCCCACGCGGCGCCGGAGGGAGGTACC
GGCCTCTACCCTCCTCACAATCGCGGCGGCAAGCACCAGCGAGACTCTCCCTCTCCGGCC
GAGGACGCGCGGCAGAAGCAAGCAGCAAGCAGCAAGCAGCAAGCCGATGGCCAGCCCCTT
CTTCCGCTCCTCCCCTCCACCCCCATGTGTTGTGAATGTGATGAACCAATATGGTCATGT
GGCAACTTTGATGCTTGTGAGGACATATTGATGCTTTTGATGAAATATTTGTGTCATGTC
TCTGACTTTTGATATGTGTGGTGCTGGAACCTCCTATCCTATGCAAATTGTGATTTTATC
CTAATTAAGGGGAAATGCTGCCGAAATTTTCTGTGTCATAGCTGTCAGTTTTGCATAACT
TTTACAGTAAAATGCCTAGTAACGATTTTAAGCTGAAAAGGTTTGCCTTAAATTTTCTTT
TCAGCCAACTTTGCCTTGCCAATGTCCAAGGACATGCCTGGTTCAATGGAACCTTTCGAT
CAGGTATTACTGCTTTCATCTCGTTGTGATGTAGTACTATCTTTTGGTATCCATTTTTCT
CAGTCAAACCATTTGATGACATCATTGCTGCTTCACAATTCCTGCAGGTACTTTTTGTTG
AGCTCTCCCGGGGTGATGCTCAGACATACCTCGACCAAATGACAAGTAACCGTGGATCAA
ATGTACGGTTTTCTTTTATTTACATTCATAATAATTCTTCAAATTTTTTGCTATTCTGAC
ATATGTTAAAGCCCAGTAGATAACTGACACAATGTTATGATTCACGTTGCCAAGTGTACT
TTGAGTTTCCCATCAATATTCTTGAAACCGTTTAGATGGTCATGTGAAATATGAGTATGT
CACTAGACTCGTCATTACAAGTATTTTTTTTATCTGCACTAACACGGGACCTGCTGCATG
ATTGTTTTTGCTATTCAAAACACTACCGACTTCTGCATTGTTTTCACAGTAAGTTAGCAT
GTCTCCACCTACCCAATCTATATAAGAATAAATCAATTCTTAGTTTTTTGCCAGTGCATG
GAGACGTAGATGCGCAGTTGTACTCCTAACGGTCATAATTTAGAATTCTTCTCCATCTCT
ACTGTCATAGGTAATGCTATAAGTCAAAAAGGTCATAGTTTCCCGCACTGAAACAAACAT
GACTTTTCGTTTGCAGTATTACCTAATGTTGATGCAGTAGCTAAGAAAACTGAGTCTGCT
ACACACATTGGAAATTCCACAGTTCCTCTTGTGTGGCTTAATTACTGTAATGTCAGCTCT
TGTGTGTGAGATGTTTGTTGTTTCCCTTTGTTTTCATCTATGGTTGACTGGTTGGTACTT
ACTGTGAGAAGGGATATTCCTTGTCATGGTCACACAAGAGTCATTTACTTGCAAGATGCA
GGTTGGTATCTTATTCAAACATTGTAAAGGCCGGAAGTGTCTGCCATTCCATGCCGTATA
TGCTAGTTTATTCACATATTGTTTGCAGCATTATGGGCAGCTAAAATCACTGATCAAGAA
AAATGATTAATGGCACTTGGTGTTTTAATTATGGGCCGCTAAAATCTATGGCACCTTTTC
ATGCTTACAGGCTTTCCCTCAAGATGCTTCTGCTCGAGGCTGGCAGAGTACAAGCCATAA
TCAGATGCGGTGGAGATCCAGTGTTTCAGATAAGCAGTCAAGTTCCAATGCTCCAACCGA
ACCCTCAAGCTCAAATGCTCCAGCTGAAAAGGTAATCCCTCTCGTACTTCTGCGAAGGAG
ATACTTGTCATTGTGAAAAGGAGATATTTCTCATTGTGAATATTTGCTGTGTGTGAAATA
TATATATACACTAAGGTTCACAATGTGCTTTGCATGCATCCAGGATAAGCAGGTGGACTC
TGATTTCATCGTGTCCAAGAAGTTTGAGCTTGCACATGAATACGAAGAAATGGATAGGGA
GTACAAGAACATTAGGGAAATGTCCAGGGGTGGCCAAGCATCAGAAGCTGCTACTGATGC
TGCTTGGGCTGCGTTCGAAGCTCGCCTGGACAAATGCAGAGCGATACAGAGAGAGATAAT
GAACGCCAAAGGGGATCCTCAGCCCATCCCTGAGTGGTTTCTATTGGGCAAGGATTTTGT
TCGGATGAAGAACCTTGAGCTTCAAAAGGAATTGGAATTAGCGGTGGAAAGTCACAAGAA
ATTCATTAAGATGTCCGGGAGAGGCCATGCCCCGTCAGCTGAAATTAAATTTGCTTTGGC
TGCATTGGAAGGTCACCTTAACAAATGCAGAGCGATACAAAGAGAAATAAGAGAGGCCAG
AGGGGATCCTGTACCCATCCCGGAGGAGTTATTGGACTACCGGCAGTAGAACCACGTTCA
TTGATTGTTGTTACATGCAAAACACTGTTTTAGTCCTTGAGCATCCGGGCAGTTCTTTTA
AGGAACTCAGATGTTATATACTCCTAGGTGCTATATAGTACTAGCACGGTTCAGTTTTTT
TCTTTTCTTTTTTGCTAACTTCTTCATCCAGTGGTGAGATGGACCAGAGAGCTGGCCATG
CACAATTCGTTATTATATTCATTGAAATGAATGAGTTGGAATTTGATTATAATCCATGAA
TCCTGTGAACATGAACGGTACCTCTCATCAAGATGCAAATACCCGTGTGTTGCAGTATAA
AGAAAACGCTGGTTGCCTCGTCAACCAAAACACCCACCAAAGCTCTAGAGTCGGTGCAGT
ATAGTCTGTTCATGTATTTAGTTGACTTAATCGCCCAAACAGAACTTTTAACATAAATAA
TTACCAGCTTACATATCATTTGTTATTAAGCCTAAATCTAGGGTGCAAATGTTCAGTTCA
TGAACTATGGTTACCCAATTTAACACGACCCGTTTTGTTTTGTGCATTGATGCTTTCTCA
CCTACGACGTTAGTGGGCAACAATGACGGTAGTTGGTTTATGATCCAAATCAATTCGTCC
TAACATGAATAAGTCTGTTTGTTTCGGGTTCATGCTTCATTTTTTACAGTTTGCCTTAAA
AGGCAGAAAATCTTCTAAAAAGGGTGCTTTCGGTTTTGGCTTTTCGCTTATGATGGTATA
AGGCAAACTCCAAAGCTGAAATCCCCTAAATAAAAGCATTTTTGTCTTTTTCCTGACCAT
AAGAATTATGTGCTTCCAGCATGACCATCCTTGCAAAACGGCTAAGAAATATATGCACTA
TTTGGTTTGCAGGTTTCCTAGTTTGTCTCCAACCTCCACTGTGCTATTCATCAATTATGA
TGCACTAATTGCTTTTGTTAATGTGAGGCATGCTTAGCCGAAGAGACGGAAGAAAAGCGA
ATTTATCGGGTTAAATATTGCGACAGACTAATTAACCAATAAACTAAATCAGTGATAATT
GTTTTTTTCCTAAACCTAGGAGATTTTT