morexGenes - Barley RNA-seq Database

Contig contig_39110
Source Contig contig_39110
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39110 (7239 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_39110

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54402	5	2579 bp	MLOC_54402.1	Available	Available	LOC_Os01g15630.1, FRAME:+1, EVALUE:9e-176, 13101.m01730 protein zinc finger, C3HC4 type domain containing protein, expressed
CDS Structure of MLOC_54402

Contig Sequence (7239 bp)

>contig_39110 7239 assembly3_WGSMorex_rbca.fasta
CCCAACCAATCCCCGCGAAACACCCGCGGACGGCGACGGCGACGACGTCGTGGGATCTGG
CCTGGACCTCTGGATTGCCTCCGCCGTGGTCCGTGTCGGTGGAGCTGCGCCCGTGGTTGG
TCGATTTTGTGCCTGCCACAGCTTCCGGTTGGGGCTAAATTTCCCCATAGGTTCGAGGTA
ATTTCTGGGAACCGTGGACTCGATTTTGGCCCATGGGGAAATAATTGGGGAATTAGGTGA
CTTTTTTTTTTTGGCGAAGAATCGACGACCTTAGGCGGAGACAATTTTGCACCCAGGCCT
ATCTTATCTGCAGTCTGAATTACTGGTAGGATAAAATATTTCCCATAATTCACATCGTAA
GAGTTGGTTAATTTTTGACGGAAACTGCAGATTGTTACATTCAAACAGATAGATTGAGTT
TATTTTACGTACTTCAAAATGAATTGTACTCACACAGGTCTATCTCTTACATTGTTGGTC
TCAGCTGGTATGTTCATCCCCGGTTTATTATTGTTGCGAAATGCAGTCATAATAACCATC
AATTTTTCAGAAGATTCTTCTGTTCTTATTTGCCGGTGTGATTTAACCTGATACCCAAGA
AAGATATTGTACGTGTCGTTCAGCCTCGTGCTTCCTGAATTCTTGATTTCACATACACAT
AAGTACGAGATGCTCTGGCATTGCACACAAGGGATAAGTTCTCTTTGAGTGTGCACAGGT
TTTGGAATATCTTGCCAGTGGTACCTATTTCCCTTGAAAGTTGTTGGCCTTCCTAGCATA
CTGCTGCCAAAATTATAAGCAAGCGTCTTTTTCTATCAATCTTGTATAAGATTGTGCTAG
GTAAATTTATTAGCTTGCTCCCAGGTAAAGTTAATAGCTTAGTGGCAACTTGAGGATGTT
TGTATGTTCAAAAGGTTCTGAATATAATCATTTAATCACCCAAACTTAAGTGAGCTATAT
CTGTTGAGATGTCTAGAAAAGACACTTGATCTTTGGTTGTAAATCCCTTCATTTATATGT
ATGAAACTGTATCATTTCTGTAACTCTGCTGCTTTGATCTTTCTTTGTCTCGAACCCCAC
CCCCCTATAATGATGGTAGAGTCAGGGGTGGCTCCAAAGCGGAATTGACTGGTGGTAGTT
AGTCGAAGCTAAAGCATCCTCGTAAAGTTAAATAAACTTTAAATAAACTACATTGGTCCT
GCATCCTCGTAAACAAGCCTGCTCTTGATGCTTATCGTTCTTGCTAAGATTGCTTTCTTC
TTTTAGATCTGGAGTCTCTTGATGCCTCTAGTACAACTTAGAATGCCCCATGTTTCTTCA
TTTCTTTGAAGTCTGTCATTATTTTGCAGTTTCAACTCGGGAGGGTGAATATGCTATTTG
TGATATCCAATTTTTCATCGCATGGATGAATTCTGAAGATTTGGTTGTATATAAGTCAAG
ATAGTAAGGGACATTGATTTGTTTCCACAATCAATATGGGGGCTAATTGTTGCATAGCTG
CCAAGCAGAGGCCTGAGCCATCAGTAGCTTCAGTTGAAGTTTTGGCATACAGGACAAGAC
ACTCGCCGTCATGGAGCTTCCGGTGGGACAACCGCACACACATAGAGGATATAATGGAAA
ACGCTGCACTGTTTTCCAATCACAGTAGTGGAAACGTTCGGCCAGAACTAAAGAGTGGTT
CCATTGCACCAACCGAAGGCCATCCCAATGAGGACAATCTTTCTGATGTACTCCGCGGGG
TCAAATGGCAAAAACCTGACAAGAAGATGGAAGCATCCAAACATTCTAAAGCTGGTTCTC
AAGGTATAGTTTTAAATAAATTGGTGTTCTGTGATTTCACCTTTATTATCTCTGCTGCTT
TATGTGGTTTCCTTTTTTTCCATCTGGATTTCATATTTATGGTCTGGATAGTTGGTGATT
GCATGGTGTATATATTTAGGACCACAAAATGAAGCTGGTTATAGCGGTGTAAATATTACA
TGAATAACTCACAACGAGTCATTTTTTTTAATCCGTGCCTCACTTTGTCTTATCTCACTT
GAGTCCAAATGTGCTTACATTAACTGGGCAATTCTCTTCTTCTTAACTAATCGATGAGGC
AAAACTTTTGCCTCCGTTTTGAAAAAAAAATGTGCTTACATTCTTTTTTCACTGGATATT
TATCATGTCAATTAAATTAGTAACTAAAAGAATATAAGTTCTATTAGGTATCAAAATTCA
AACTTCACTAAAGAAATAAGCAAAATTTTCACTGATACCGAGCAGTTTTTCACCATCTGT
TTCATCTTTTCAGCCGTTCAATCTACAGCGAGCAATTCACTTCCTGAGGTATGCATTATT
GAGTATTGCAGCTATATTTCCTAACTTAGCACTCTTATTTTCCAATTGCCATCTAAAATT
AGAACAGTTACTTATGGTTATTTCCTTCACCAATCACTATTTTTTTTGTGTAGGCAAAGT
CCTGCAAATCATCACATATGGTAAATGTTGCTTCAGACATCAAGACATCAAAATCCCTTC
CTTCAACGCCACCCATAGTATCCAGATCAGATCCTTCATCCTCTAGGTGTCATTCTCTTC
ACGTGGACTCATTCTCAATGAGGAAAGCACGTCGATCACCTGGACATCAACTATGTAGAC
AGATCTCGGACAGCAAGATCCCATCTCTCAAGTCCTTCAGTGAGAGTAGCTATGCAGGAG
GAAGGCCGTCGAGTTCAATGCTCTCGACCTGCAGTAATGATCCATTTGGAGGAGGATCAC
AACATGGGGGATCATCGGATGGGTGGTCAACTCGCACATTTTCTGACTTAGTGGCCTCAT
CTCAAAGAGAGAGGTGGTCAGTTGAAAGTGAGCTCTTTGGCTCCATCAGCAGTAAAATAG
CTAGATCAAATGATTCACATGCAACTGTTCTCTCTCCTGACGAGGGGATATGCAAGCTCT
GTTCAAAGCTATTGAAGGAACGGTCTACATGGAGTTCTCATGATCTGGGAGTAGTAGCTG
TTCTATTCTGTGGTCATGCATACCATGCAAACTGTTTGGATAGTACTACTTCAGAGAGTG
AGAAATATGATCCTCCATGTCCTGTATGCACCCATGGTGAGAAAGGTGCAGCAAAGCTAT
TTGGTAAGCTGGACTCAAAGAGTAAGAGCAGGAAATCTAAAAATGTGATGTCAGATACTG
ATATAGATAGGAGCTCTAAGCACAAGAAGAGAAGTATGAGGGAACCCAGGTTAGGCACAA
GTTCTAGCATGAAGGATTCATTTCGTCGACCATTTTTAAAGAGGCATTTTTCAATTGGTT
CTCGACCGCCAAGATCACTCCTAGGGAGTGAGCCAACAGGAAAGAAAAGCTTCTGGGCAA
GACACTGGAGAGAATAGCCGGCTACACATCATCAACGTGGTTAGCATCTTCGTATGTGTT
TCTTATTCTGTAAATTAAATGTTGATGGCTCTTCTCATATGGAAATAATAGTGTCTTATC
TATCTTTATCTTTTCCTTAGGAAATCATTTCATGGTGTGAGCGAGCAAGGATAGAAGTGA
AGCTACATATTTTTATGTTTCGGTACTATTCATTAAAGCACACTTTGTGCTGAACAAATC
TAGTGAGACTAGAAATCTTCTTATACCTGCAACTGAGGATTGTTGCGGTCTAACTTTATT
CCTAGGCAATGTAATAGAATAGAAAATGGGAATAGTCTCCCAGGGCGGATTTAAAGGTTT
AAATCTGCTATGCTATATTGTTATCTTTCCATTTTCTTTTGTAATCATTATTTGCCAGTT
AGTATGCATAATTTGGATACTAGCATCCAGATAGTTCTCTTCACAGGAACATGAGTATTT
TGGGACTATAGCTCAGAAGGATTTCAGACTGAAAGAAGCAGGAGTTCAAATATTATAGCT
CATCTGGCGATTCAAATGTACTAGTAGATTTTACAAGATGTGCAAGTGGAACCAAGTGCT
GAATGGTTAATCTGAGGATTATTGTCTTGAATGTTTTTCTTTGATGTGCCCTGGTGCATC
GGTGGTATTTACATCTGTCGGATTAGCTGATTTAGATTTAGATAAATCTTTCAATGCATT
TATAGAACGAGTATTAGATGTTAGTAGTGGATATGCTAATGCTGAAATCAAAATTCTCAA
GTTTCTTAGTGGCAAAATGTTCATGATGACAGAATCTGTTGTGGAGCCTCATCAATACTT
GCTAATACTCCCTCCATTCCTAAATATAAGAAATATAAGCCTTTTAAAAGATTTCATTAA
GGGTCTACATACGGAGTAAAATCAGTGAATCAACATTTTAAAGTATGAACCTTTAAAAAG
ACTGAGGGAGTACATTTCAGACCGTGAAAAAGAAAGCAGTGGCTTAAGGAATGGCACCTT
AAGCAAGTTCTGACATTTTGCATGCGATCCATGTGTCATTTGTTTGAAACACTGCCTTGA
GCTATCTCGCCTCTTCGTCGGACTACCGGTTGATGTTGACATGCATTCTGGAGTACTACT
ATAATCCGAGCATCACAAACTTAGTTCATTTGGTATAATTGATAATATCAAATATGCTGG
TGCTGAGACCAACCAATGATTGAATGTTTAGCAGGGTGGTGGTACCATAGCCCCTTAGAG
ATCAAACTCAGGTTTAACGTTTTACTGTCTCACTAATGCGATTTTTTCTTTGTGAGAGGC
TAGCGTCGTTGTCCGTGATGGCTTCGTAAATGTTGAAGCTCTGCATTACCGACCGGATGC
GAAATTACCACCCAACCACGGCTAGCAAATCTGGCCCAAACACCCGGGCTGACCGGTAGC
CCACATACACTCCCATATATGGGGCTGCTCGGGCACACCCGCCACGTAGGACTGACTGCT
AGGTCCAGTGTCCATTCGCCCACATATGCTCCTTTCTTGCCTGACTAGCCCTTCTTCTCT
TCTCTTTTGGCCTCGTCCGCACAACCGCCACTGAAGCTTCGTCATCATGGTTGTTGTGCC
GTCATCCGCAACCCAGGGCTTCGCCACCAGAGGTCCAAATCCACATCGACGTCGACCATG
CCACAATTGATCAAGGTCATCGCCACTGGGAGCCGCCCTCGTATGTCCAACCCATCCATC
TATACACCTCACGCTTTACGTGTTTGATGAAAATGTTTGAGCCGATTTTCTATTTTTTTT
GGTCATTACTTCTAGATCGTCGTTGGATTCGTTATGCACTGATGGCTATGGAACCTCTGA
CCTTGACAAATCATGTTCTACGAGTTCATCCCCTCATTGGATTCAAACGATGAAGATGTT
GAAACGATGATGATGAGTATCCAAGAGGAGATGGGGAAGGCAGAGGAGCTCGTCTTGAAC
TTCAAGGGTTCCATAAAGGGCCAAAGAGTGATTCCCCAGGACAAGATTTATGGTGCACGA
CTTCTTAACACGGACCAATTCACTTCGGAGCCAACATAGCCTGAAAGTTTCTTTCAACAT
CGCTTCTGGATGAGCATAAAATTGTTCTTGCGTGAATGCCATGGAGGAGGCTGATGACAA
CTTCAAGATGAGGAAGGATTATTGCGGACAAATCTTCTTCTCTCCTCTATATAAATGCAC
GGCTAATCTCACGATGCTTGCGTGCGGTAAACTCGCATATGCAATTGATACTTAAATGGT
TCTCGCGACCACAGTGTAATTTTCACGTATTGTGGTGATGGTGTTTGGACCACAATACCT
GAGAGAGCCAACTGTGGAGGACAAAAATGGTTGATAATTGGAGCATCAAGAGGATTCCCG
AGTATGTTAGGTTCAATTGATTTCATGCATTGGCAACAGAAGAACTGCCCAAAAGCTTTG
CATGGGCAATATCAGGGTCACATCAAAGAAACTACCATTATACCTGAAGCACTCACATCC
AAAAATTTATGGATTTGGCATGCTTTCCTTGCCACGCCAGGTTCATGCAATGACATCAAT
GTGCTTCAAAGATCTCCCTTGTTCAAGAGACTTTGTGATGGGAAAGCTCCACCATGCAAC
TATACCGTCAACAAGCACACCTACAACATGGGTACTAGCTTGTAGATGGTATCTATCCTT
AGTGCGCGACATTTGTGAAGGCCATGTTTGATTCTCAAGGAGACTAAAAGTACAACTAAT
CCCCGCATGGTTTTTATAATTTATAACAACATATATATCATTAAACTAATGGCTACTCAA
ACAATATTTCAAGAAAGTTCATTATACGTATGGTAATGGGATGTGAATGTGGACCCCCTC
AAAATGCTAAGGAAATGTGTTGGCAAAGCTTCAAGATTCTACATTTTTTATTAAATGATT
CAAAAATACATTTAACATATAAAAAAGTCAATACCCAGGGGATGAAGTGGGCAACACCTG
TTGCAGCCGAATGGTCAAGAGGGTCAATGCAAGTGGTCCCTCACACCCTGTGACACGCGG
CGATCCACGTGGTACGACACTCGTAGTCGGAAGCGTCACGACTGCGCCCCTCGTGTCTGT
AAGAAGTAAGAATGAAAACTCTCGTTGATTGATTATTGAAAAGTACAATTTATATGATCT
GGAGAGACGCGACGATCCGAGAAGATGCGTCGGTTCCAGGGACGGGAGAGAGAGCCGCCC
GTTGCGGGAACAACCGCATGACGGTTGGGCAAGGGGAGATTCCCCACTAATTACATGTGC
TAATTAATCACAACACTCCCCCTAATCTACGCTTGACCATGTAGAATCATCTCATGATTG
TCCAGGCATTGTCATCATCTCAAAAGAATTATTCTCCAAAAGTTCTTTCATGAAACCTTC
GATGAGAACCTGTAACATAAACTCATAAAGAGATGGCATAATATGATGTCTTAAACAAGG
ATATCTCAAGAAGAGACTCTCCGTGACGCCTGCAAGTCCCTAAGTCGTCGCATACCAATT
CCATGAACATATTTTTGGAATGTAGAACTTGGTAGAGACTTGGTAAATAAATCAGCAAGA
CTCTCGCATGATTTGACTTGTAGGATGCTTATTTCCCCGCTTTTCTGAAGATTATGGCGA
AAACCATTTAGGAGAAATATGCGTACTGATATTACTCTTGATGTACCCTGTTTGCATCTG
TGCAACACAGGCCACATTATCCTCATAGATAATGGTGGGTGATTCTATCGAACCAATTGC
ACATGACTGTTGTATGTGGTTTATCNNNNTGCGAAGCCATACACATTCACATGATGNNNN
AAATAATGAAATTATTTCAGAATGATTGGTAGATGTAGC