morexGenes - Barley RNA-seq Database

Contig contig_39060
Source Contig contig_39060
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39060 (8602 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_39060

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54335	4	2346 bp	MLOC_54335.1	Available	Available	LOC_Os02g48570.1, FRAME:+2, EVALUE:4e-153, 13102.m05495 protein peptide transporter PTR2, putative, expressed
CDS Structure of MLOC_54335

Contig Sequence (8602 bp)

>contig_39060 8602 assembly3_WGSMorex_rbca.fasta
GCCCCCCCCCCCCCCCCCCAAGGACTTGAACACATGGATACAAATATTCACCCCCGTGAC
TTTGATTAATTTGTTCCCTAGATCTTGCCTATTTGTGGTTATGTAACTTGTTTTATCTAG
TTATATTGCTTGCTAGTGTTCCTTTGTCATGCCATATCTAAAACTTACATCACTTGGTTG
TATTTTATAGAACCAAATTTTTTGCAATATTTCTAACAGAATACTCATTCCGATCCATAT
TAATTGGCATTGATTTACTATAACTTTAATAAGAAAGTTCAAATGTGTAGTCCCTCTTGC
AGTCAGCATTTTCAATCCTTGAGGGGGCAACAATGGAGGTCGGTAAGGATTTGGATCCAT
GACATCATACAAGAGGATGGCCACCGATCAGAGTGAGGGGACATGAGCGAGCAATGTTGG
CTCGGCGAGTGATAGCACGTGGGCACGACAAGCGGGCGGTGGTGTGTGAGAGATGAGCAT
TCGGGTTTGGCTCACACATAGGGTATCTCAAGTCAAAGATGACGGAAGATCAATCATTCT
TCTTATAATGTGATGCAATTACGTATCTCCTATGACGTAACTATCCACCCCAGACGTCTC
GACAAAACCAGATGACGTGAGATCGAACGCTCTTATTATGTGTAGGTGCATTACGTATCT
CCTATGACATCACTATTCAACCCAGACGTCTCGATAAAACAAGATGACGGAAAATCAAAC
GCTCTTATTATGTGTAGGTGCATTGCGTACCTTCTATTACGTAACTATTCACCCTAGATG
CCTCGACATTACGTATCTTCATGAATCAACATATTTATATTGGACTACCCAAGTGGTTTC
CAGACAGTTCGAGATGCCATAAAAAATCACTACCCACATTAGACAAGGAACTCACCTTTT
GGTCAAGAAGGAAACATGCTACATTTAAGTTAATTCAACACATCAAAAAATAATATTTCA
CATGTTATTCTGCTAAAAAATAACTTTGAAGCACCTACTCTGTCCGTATATCATATTTTG
CAAAACATAAACAAAGATGGTACTACTTAGGGGCTTCAACTAAACAAACAAACACTTAAA
ATAATTAGCTTTCTTTCATCCTAAATTAAAATGAATTCCAAAGCTCAACTAAGCAACTTA
GTTAGGTGTCAATTGCAACTAATCTAATTTTATTTTTGACAAGCAAAGAACCTTCAAACG
TGTTTGGCTCATGGTTTTTTCGCTGTTATTAGTAGATCAAAGCCCTTAAAAATTGATTAT
TTGTTCTAACTGCCACCACTTCTACACATTGCGCCGCCGCACATTAATAACCAAAAGGCA
CTAAAATTGCAATGAAATCTCGCCTGTAAATTGAATTACATGAGGCAAGGATATCTAGGG
AAAAGATGTTGGGGATGCAGAGCTGCTCCCTGGAGAGGAGTGTCGGCGTTCTGTTGCTTC
GGGGGCATGTGGAGGCGGTTGACCCGCGGCTTGGTGCTCGGTGAAGCTTGCAGGGAGGCC
TGCTCGAGGAGGAAGCATGCGAGTAGGTTAGTGGTGAGAAAGCCGTTTCCTGGCTTCGCG
ACGACGGTGGTACTCCCTGTCAAATGGTTTCTCGGCGGCGCCGATCTGGAGTGAGACGAT
GACGGCAGTGGTCGGTGGCAGTGGAGTGATTGTTCGGGCGACGGCGGATGGTGGAGGGGC
TGTCGTGATGAGGGTCGACGACGGCAACAATTTGGTTGGAGGTTGGTCGTCGACGATGCG
ATGGTTGGGGGCGGCGGCAGGCGGTCTGATGGAGGGGTGTCGACTTGTGGGCGGGGGAGG
AGCTGCAGTGGGGGAGGGGGGAGGGGGCTATGCCGGGAGTGAGATCGAACGCTCTTATTA
TGTGTAGGTGAATTATGTATCTCCTATGACGTAACTATCCACCCAGATGTCTCGACAAAA
CAAGATGACGTGAGATCAAACGCTCTTATTATGTGTAGGTGCATTATGCATCTCCTATGA
CGTAATTATCCACTTCAGACGTCTCGACAAAACAAGATGACGGGAGATCGAAAGTTCTTA
TTATGTTTAGGTGCATTACGTAACTATCCATCCCAGACGTCTCGACAAAACAAGACGACA
GGAGATCGAACGTTCTTATTACGTGTGTGTGTGCGCGCGTGCGCATTATGTATCTCCTTT
TTATGAAACTATCCACCCCAAACGTCTCGACAAAGCTTCCCGACCGCAAGCCGCCAACAC
CTATCATTGATCATTCTGAAAGTAAGTCAGTTGCTTGTCGGCCCCCAGGGTGCTCCCACT
TGTCACCACCAAATCTTAAACATGATAGCCAAAAAATTACAGAGTTTATCACCCCCAACA
CAATTAACCTTACAAATAAACCTTATGCGGGAAGTAATAATAAGCCTAACATGGAAAGAA
TTCACCGCGGGGCCATTATAAAGAAACCAAAGCAAGAGGACCGAGCGCCGCCGCTTTAAT
TGTGGATATAGATAGAAGAGATATCTTGATATTACTATTGGTCATAAGAAAAGATATGCC
AATTGGCAGTGCTATTAAGAGGGTGAGACCACGTTGCATGGCCAGGCCTTGCCTCCGCCA
TGCAGTTTGACTCTTTGCATTGCAGCACACCTGCCACCTATCATCCTGGCTGGCCTTGCA
TATACATACACAAACACATAAATACACACAAATATATTACATCATCAACGCCCAAACACA
TAGGCATATAGATACAAACTCCAGGAGATATATAGGTGCATCTATCTATCCTCTGACCAT
AAGAAGAGAGAGAGGAGGAGGGGTGTGGAAGCACAAGCGCAATCAAGAGTGTGCCCTTCC
ATCATGGATGTATGTAGATTGTAGAATGGATGCAAGCCTAGCCGGCTTCCTTTGCTTTTC
TTTTCTCTTCACCTGTGATGTGCCATCAAGCATGGATGAATGATAGCTCTACTTGTGTGT
GTGTGTATATATATATATCTGCAGATTGCTCAGGAGGATGAAAGGGATCAGGGGCTAGAC
CATGACCATGTTATCGTGGTCGCCGAACAAGGAGAAGTGGAAGGAGAAGGCGAGGAGACG
ACGAGGGATGGGTCGGTGGATTGGAACGGCAGCCAGTGCCTGAGAGCCAAATCTGGTGGA
TGGCCTGCCGGACTCCTCATCCTGCGTAAGTAGCAATATATATACATCTTCTTGCTTAGA
TCAGATTATATTCATCTCAAAAGAAATCTTACCAAATTAGCACAATTATATGTTCATACT
AGTAAGAGAATGCATAGATATGCATGCCCAGTAAATGGAATATTAGCCTACTAGAAATGC
ACTAGTAGGATTAATTCAGAGATTTCTTTTGTACGTAGAGTATATACGGCCTCTGTACTA
GTAGTACCTAAATTGGAGTATCCTAAGCAGATCTGCCATATTTATTACTAGCTGTTAGTA
GTAGTATTTTTGTTTGCTCTGGAAGAGGTTGCCAAAACAAAAGTCAGACCTGCAACTACC
GTGGCTTTGGCCTGGCATAACATATGCACGTCATGGATGCATGAAATGCAGTAAACCAGG
CACTTGCGACGTTAGCGGTGAACGGCGTGAGCATCAACCTGGTGACCTTCATGAGGGTGG
TGATGCAGCTGGACAACGCCAACGCCGCCAAGCATGTGAGCAACTGGTCTGGCACCACCT
ACGTCTTCTCCATCGTCGGCGCCATCATCGCCGACTCCTACTGGGGAAGATACAAGTCCT
GCATCATCTTCCAGCTCATCTTCCTCGCCGTAATTAAGTGCTTTCCTTCTTCTTCTACTC
CCTCCGTTCCTANATATAAGACCTTTTAGAGATTGAACTATGAACTACATACGGATGTAC
ATAGACGTATTTTAGAGTATAGATTCATTCATTTTGCTCTGAATGTAGTCTCCTAGTAGA
ATCTTTAAAAGGTCTTATATTTTGAAACGGAGGGAGTACTACTTTCTTTTCCTTGTTCCA
TTCCATGGCAGCTCGGAGGCATTAATAGATAGCATGCAAATGCACATACTGATTATTGAC
AGGGGCTGGTGGAGCTCGCCATATCCTCCTATTTCTTCCTGCACAACTTCAGCTGCAACT
CGGAATCGGAGGACACCAAGACGTGCAGGACACCGACGGCAGCGGAGACAGCCATATTTT
ATGTGGCCATATACAAGATCGCGCTGGGGAATGGGGCATACCAGCCAACAAACACGACGT
TCGGCGCCGATCAATTCGACGAGGAGCACACCAAGGAGAAGAGGTCCAAGACGGCCTTCT
ACGGCTACTTCTTCGTGGCCAACAACCTGGGAAGCCTGGTGGCCGTCACTGTACTCACCT
ACATCGAGGACGAGGGGAGGTGGTCGGCCGCCTTCGCGTTCTCTGCAGCGGCGGCTCTCC
TCGGCCTCCTCCTGTTCGCCGCCGGGACCAAGAGGTTCAGGCACTTCATGCCCTGTGGGA
ACCCTGCCGCCACCGTGGGAAATGTCTTCGTCGCTGCGACGAAGAAGAGGCACCTCACCA
TCCCAACCCAAGTGGAAAAACTGTATGAGGTAGATGGAACTCACAGCGTCAATGGGGGCA
GGAAGATTGCACACACACCAGGATACAGGTAAGCCAACCCAATATACACCACACTCTTGT
TCTATATTGAAGATGGACTATACCTATTGCATTGCTCAAATGTTTCTGCCATGTACATAG
TTATGTGTTCTGTAACTTGTGTTCCGTTTTTGCAGGTTTTTGGACAAGGCGGCAGTGGTC
GAGGATCCATCGATCCTTCTACCGGGCGAGCAGCCAGCATCCGGGCCGCGACGGCTCTAC
ACGGTCACCCAAGTGGAGCAAGTGAAATGCATCCTTCGACTCATTCCCATATGGCTCTGC
AGCATCATCTACTCCACCACATACTCGCAGATGTCCTCGGTGTTCATCGAGCAAGCACAG
GCCATGGACAACACCCTCTCCCGATTCACGATCCCCGCCGCAGGCATCGGCATCTTCGAG
ATCATCGGCGTAACATCATTCGTCTTCATCTACACCTTCTGCATCGCCAAGCCGCTGTCG
AAGCGATCAAAGGAGCCGACAGAGCTCCAGAGGATGGGCATCGGGCTCGTCATATCAACC
GCGGCGATGATCGCGGCGGCGCTGGTGGAGCGGCAGAGGCTGAAGCACGCGGACCGGTAC
CGCCTGAGCGTCCTCTGGCAGATCCCCCAGTACCTGCTGATCGGGGCGTCGGAGGTGTTC
ATGTACGTGACCATGACGGAGTTCTTCAACGACCAGCTCCCGGACGGCATGAGGAGCCTC
GGCAGCGCAATGTCCGGGGCGTCCATGTCGGCCGGGAGCTACGCGAACAGCCTGATCGTC
TCGCTGGTCATGGCGGGCAGCCGCAGCGGAGGCCAAGCCGGGTGGATACCTCAGAACCTC
AACAAGGGCCATGTGGACAGGTTCTTCTTCCTCATCGCGGCGCTCAACGCGGCGGACCTG
GTGCTCTTCGTGCTGCTCGCTAAGAGGTACAAGGCGGTGGCGAAGCCTGCGGCGGCGACG
GCGGCCGTCGGGCCGATCAAGTGAGCCTGCTGTTGGTGTATGCATATATAGTACATGTAC
ACACCTGCTGGAACAGTAGTGCATGTACAACGTACCTCCACCTGGAACTGGAACTGTATA
CCAGGTGATGATAAATAAAGGCCATCCGGCTGCCTGCCTTAGTTTTTTAGTGTCAAGAAC
TTGCTATACCCTCCTGGAACTGGAAGAGAAATTACCAAACCAGGTGCTGAAAATTAAAGG
CATTCTGAATGCCTGGATACTCTTCTAGTTTTTCTGTATGAACATATGTGGCCATGTCAA
CGGTGGTATCTTCATGATATTAATATATTCTCCTTTAAAAAAAATGGCAATGGTGGTTCT
GTAACTTGCTCACTTTGCTTGCAGTAAGTATATAGTAAAGACTAGTTATTCTCCAAAAAA
AAATGCATAGTAAGGACTAGTTAAGGAGATCAAACTCCATACATTTAGACGGAAATGCAG
GAGCTATGGACATGCATTCTGTAAAAAAAATCAGAGGGTTGTGACTTCAGAGGGTGAAAC
TGAGAAGGTGAATTTGAGATTTGAATCAGTCAGAACAAGGGCAGTAGAGTACCTGCATGC
CGCCGTTGGAGAGGATCACTGGACTACGCCGACCGTCATGACGGAAATGCGCGCGGCGGC
AGCTGCCTTCCCGGACTCCGGTGGCCGCTCGTCGTCCCCTCTCACTATGTGTCTGTGTTA
CTCTCTCTTGGTCTCGGTAGGAGGAGCCCAGGAAAAGAAAAGAAAAAGTATGAGGAGCCC
AGCAGGCCGGATGTGCCGCATTCATTCATGGGCTTCCAAAACGGAGTCAATCCAGTTGCG
TGGCGGCCCAATGATTCACTCTCCCTTATCCAGACGGCTCGGCTCTCCTCCCCTCTGCTC
TGCTGCTCTGCCATGCCATGACGGTCTCCGCCTCCATGGCCACCTGCTTCTGCTCCTCCT
CGTCCTTCTCTCCACCTGACCTCGCCGCCGTCCATTCACCCCCATCTCCCTCTCCTCGCC
GTCTCCGTCGCCGGAGGTGGAGCTGCAGAGCGAGCAGCACCGGCGGCACGTTCGACCACA
ACCCGCTGCTGCAGCCACCACCGGACCTGCGCTTCCCGCTGCGCCTCCCCGTGCAGGATG
GCAGCTCGGGAAGCCGGCTGCGCATCTTCTCCGGCACGGCGAACCCGACGCTGGCGGAGG
AGATCGCCTGCTACCTGGGGCTGGAGCTGGGGCGGATCAAGATCAAGCGGTTCGCCGACG
GGGAGCTGTACGTGCAGCTGCAGGAGAGCGTGCGCGGCAGCGACGTGTTCCTGGTGCAGC
CGACCTGCCCGCCGGCGAACGAGAACCTCATGGAGCTGCTCATCATGGTGGACGCCTGCC
GCCGCGCCTCCGCCAAGACCATCACCGCCGTGGTGCCCTACTTCGGCTACGCGCGCGCCG
ACCGCAAGATGCAGGGCCGCGAGTCCATCGCCGCCAAGCTCGTCGCCAACCTCATCACGC
AGGCCGGCGCGCACCGCGTGCTCGCCTGCGACCTCCACTCCGGCCAGTCCATCGGCTACT
TCGACATCCCGGTGGACCACGTCTACGGGCAGCCCGTCATCCTCGACTACCTCGCCAGCA
AGACCATCTGCCCCAACGACGTCGTCGTCGTCTCCCCGGACGTCGGGGGCGTCGCCAGGG
CGCGCGCCTTCGCCAAGAAGCTCTCCGACGCGCCCCTCGCCATCGTCGACAAGCGGCGGC
TGGGCCACAACCAGGCCGAGGTGATGAACCTCATCGGCGACGTCAAGGGGAAGGTGGCCG
TGATGGTGGACGACATGATCGACACCGCCGGGACGATGCACAAGGGCGCAGAGCTGCTGC
ACAGGGAGGGGGCCAGGGCGGTGTACGCCTGCAGCACCCACGCCGTGCTCAGCCCGCCCG
CCGTCGAGAGGCTCTCCGGCGGCCTCTTCCAGGAGGTGATCATCACCAACACCGTGCCGG
TGCCGCCGGACCAGCGATTCCCGCAGCTCACCGTGCTCTCCGTCGCCAACCTCCTCGGCG
AGACCATCTGGCGCGTCCACGACGAGTGCTCCGTCAGCAGCATCTTCCAATGATGATGAT
GATGATGATATATACACCCATCCATCAACATATCATCTTACTACATTACAACATCTGTCA
CTTTTTGTTTTCCAGAGGCACCAAACATTCACCTGACATTGCTAACTAGCTAACAATGCT
GACATAAAGAAGATCCCTATGTTGATCATCGTGTCATCTACACACAAATCAAAGATATAT
TCACCGATTGATTGCTTGGTTGATTACATCAAAGGATTAGTTGCTTCTTTGCCAGTTGAA
GAACATTGCTCCTTCTTGTCTCTGCTACTGCCGCTGATGCTGCTGCTGCCGCATATTTCT
TCAGCAAGTTTGATGGCGCCGACGCTGCTCCTCCTTGCCTTCCCTGCTGCACCTTGCATC
TTCTTAAACTTCCCACTCAGCGACCCGCTAGCTGCAATAAAATAACATCCAGTGACTATC
TAAACCTCCATAGAAAAAGACTATCTAGCACACACACATTCGTCAAAAATAAAAAGTAGC
GGCACCGAATGTTGTGGCAGGAAACAGCACAGGCATTCAGTCAAATTGCTACCGATTGAT
ACTTCGGATCCATGAACAATGGTGCAGGGAGGGAGGACGTTTGTACCTTGCCACTCCAAG
ACAACCTTAGCCTCTCCCTTGACCACTTTTGGATACTGATCTATGCGAGAATCTTCCAGT
AACAATTCTTCCACCTGTGCCAAGATACAAGTTCAGTAACGAAAAGGAAAGGACCCTCTT
ATCCGGCGACCGTTCGCTGGGAGGGGGTGGCATTTGCAAATGCTTTGACGCCATTTTTAG
TTGGTCGGGGGGTGGCGGTTTCTTCAGAAGAGCATGGCATTTTCTGGAATGAAGGCTCAA
AACTGCCATCCTCCCAGAAAATGCCATGTTCTTCTGAAGAAACTGACATTCCCGATACAA
CTAAAACTGCCACAAAAAACATTCAAAATGCCATGCTATCCCAACAAACGGTCGCCATTT
ACTTTTCCAAAAGGAAAACTAA