Contig Data
morexGenes
Links



Map Locations of contig_39027 (6605 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39027

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54281 1 258 bp None Available Available None
MLOC_54280 6 6254 bp MLOC_54280.3 Available Available LOC_Os10g41150.1, FRAME:+1, EVALUE:0.0, 13110.m03828 protein aminotransferase, classes I and II, domain containing protein, expressed
MLOC_54282 2 2367 bp MLOC_54282.2 Available Available LOC_Os10g41160.1, FRAME:+2, EVALUE:5e-81, 13110.m03829 protein expressed protein





CDS Structure of MLOC_54281






CDS Structure of MLOC_54280






CDS Structure of MLOC_54282






Contig Sequence (6605 bp)

>contig_39027 6605 assembly3_WGSMorex_rbca.fasta
CGCCGCTCGTCACCGTGCCCTTCCTCCGTGCCCCCCCCCCCCCCCCTCCCCCCCCCCGCC
AGGGGGGAGGAAGGGGCGGCCGCCTGTTGGACGGAATGGCGCAATGGGACGCGCTCGTGG
ACGCCGCGCTCGGCGAGCTGGCGTCCAAGAGCCTCCTGCGTGCCACGCGCCCCATCTCCC
TGGCGCCGCCGCTCGCGCCGCCGGAGACCTTCCCAGGCCCCGGGCCGTGGGACCGCGCCG
CCGTCGAGATCCGCCTCGACCGCGCCACCCTCCACCAGTGGCTCGCTGAAGGTCCGCAGC
AGCGTCAATATCCCACGCTTGCTCGTAATAATACCCCAGACAATTCCGCTTAATTCCTTT
TGCGTGTTGCTTGCTGCCTTCCTTGCTGTGTGACTGTCCCTGTTAGGCTGTTAGCTGTCA
GGTTAGGATATGGTTTACTGCCTTGCTGTGTGACTGTGTCCCTGTTAGGCTGTTAGCTGT
CAGAACAAGCTGCAGAGTTTGTTCGTGCTCATTGTTTTGCGATCATAGTTAACTTCGAAG
ATTTACTAGTAGTTGGTTCACTACATGGATTGTTCACGGGCATGTTTGGTTTAGGTGGCG
AGGCCAGTGGCCAGGAAGAGGAGCTGGGTGAGAAGCTCATTCTTTTCTCCGGGAATGACT
ACATGGGACTCAGCTCGCATCCGGCAGTCCGTGAGGCCGCAGCGAAGGTGTGCAAGTTCT
GTGCCCGTTGCGATTGTTAGGTCTGTAGAGTACTCTGAATCGAAGAGTCTCTGCTTGAGC
TAACGATTGGGTGCGTTTGCTAGGCAGCTCAAGAGTACGGCATGGGCCCTAGAGGCTCCG
CGTTGATTTGTGGGTATACTACTTATCACAAGTTGGTGGAGGAATCATTGGCAGAGTTGA
AGAAAAAAGAGGTCTAGTGGCATAGAGTTTTGAGTTCAAGTAGCCATTGCTTCACAAGTT
TTGCATCCTCACGTTAGAGTTTTTTTTTACAGGATTGCCTTCTCTGCCCCACCGGATTTT
CTGCCAATATGGCTGTGATGACTGCTCTGGGAAGTATCAGCTCTCTTTTGGCGGTTGGCA
GGAAACCCGCAAAGGACGAGAGAATTGCTATTTTTTCGGATGCTCTGAATCATGCTTCGA
TCATCGATGGGATTCGCCTTATTGAGCGTCAGCAAGAAGCTGTAGTGTTTGTCTACAAGC
ACTGTGACATGTCTCATCTTGATTTCCTCCTGTATGTTTTTCACTTCTCAGTCATAATAT
GATTATTGCATAATATGCCATATGTAACCATGAACTAAGATAGCTACAAATACAATATCA
TTGTCCATGCAGGTCCAGTTGCTCAATAGAAAAGAAAGTTGTTGTCACAGACAGGCAAGT
TTTTTCTCGGATTTAATTTCCTCGCCGAAGAAGTACATTTATGTTTGTGTGAAGTAGTAG
AGGCATGCTCGAGGCATGCATAATGTCAGAGCACCCAAATTCAGATGCTCCTTTATTGAT
ACAATGCAGCTTGTTTAGCATGGATGGTGATCTTGCTCCATTACCTGAACTTGTGGAACT
ACGTAGGAAGTATGGATTTTTATTGGTCATCGATGATGTTAGTAATTTTATCTCCTCTCA
GATACATTTTTGCAGAGTTTCTTAGTGATCGATTTTGTTGTGATTTTCCTTGAACAGGCC
CATGGAACACTTGTTTGTGGTGATAATGGTGGTGGTGTACCCGAGCTGCTTGAATGTGAG
AGTGGAATTGACATAAGTGTTGGCACCTTAAGCAAGGCTGCTGGCTGCCAGGGTGGGTTT
GTAGCATGCAGGTAAACAGACTTACAGACACTTAGATCAGGTTGTAGTATGAATGCACAC
ACTTCTGTACATCGCGGTACTGATTTTAGTAAAAAAATTCATATAAAGTGATTTTCAAGG
TTCTGGATCATGTCATCTAAGTTAGCTTTGGCAAATTTGCAACACAGTACCTCATGCTTA
TAATTCAATGAACAGGAGATAACTTGTTATGCACATCTGCAACACTGTATATTTATGGTA
CTGGACACTAGACTTTGGAACATCAGTACTCCACACTACATGGCTTCCCTACACTTTGGA
CTTACTATGATATCTTGATAGTTTACTTACTAATAACTAAAATTTTGGAATGTGTTGAGC
AGCACCCGATGGAAGAGTTTAATTCAGTCGCGAGGTCGCTCGTTCATTTTTTCTACTGCT
TTGCCAGTGCCAGTAGTTGCTTCTGTTCAAGGTAATATTCACAACATACCAACGACGTCA
CAGAACCCTCTAAAATGAATATCGCAAGCTAGTGGACTGTCATTGTTGTGTTCCATTTAT
TGAGCCAATCTCCAATATTTATTTTTATCAATATTTCCTCTTACCTTCTATTCATTAGGA
AATGCTTAAAATGATGTCTAGTGCTTTCACATTGGTTAGTAAGAATGATAACTGGATACA
AGCACTTCAGCTAGTTTAAGAAACTACAGTTATCAGGAACTTGCATTTTTCTGAACGAGA
AACTATCACGTTGCTTCAAATATTCGTGCTGTTTTCTGATTCTAGCGGCGCTCCATGTCT
CAAGGAAGGAAAGATGGCGGAGATCATTGGTCTGGAGGCATGTGCAGTATTTTGCATCCT
TGACTAAACTCAATATAACTAGTCCCATAATTTCCATAGTAGTAGGAAGTGAAGAAGCTG
CACTTAGGGCTGGCAGGTTATCTCTTCCTTCCAATTTTATTTAGTGCTAGTCTGGGTCAT
CTTATGTTCCTAATCATTTCGTTTTTGAACCGCAGGCATATGCTAAGATCTGGATTTCAT
GTTACACCAATTCGACCACCCACCGTGCCGCCCAACTCATGCAGGTCCCTCCTCCCTCCT
GCTTTTTTCGTTTGCAACCCAGTGTCTTGTCATGAGCTTTACCAATCTAGAACGTGCAAC
CCTGTGTCCAAGTAATTGGACTAGGACTTTATGGTTAAGGGCGTATAGCACAATGTCATA
ATTAGCAAAATTGCTTGTAGCATGCATATCTCTGTATCTATGGATTCCTGCTCGATTCTA
GTGCGGATAAATCACCAATCGACCAAGATTAACTGACCATGAATCTCTTGACAGGCTGCG
AATAACTTTGAGTGCTTCTCATTCCTCGGATGACATCAAGAGGCTGGTCAATGCGCTCAC
TCCCTGGCTATCTGGCAAACATGCCAAACAGAATTTTGTGGAGGGGCATGCTGAGCAGAG
CTATGTCGCGGCATCAAAACTTTAAGCAGCATGAACTGAAGCTTGTAGGCGGGGACACTA
GATGTGCTGGAATACGTGGGAGAAAACGCTCACGGAGAAATAACTCGGTAGATGTTGATG
TGATCATTTGTGTCCATTTCACACGCGACAAAAGTGTTTCCATAATTGGTATATATGGTC
TTGTGAGGCATACTACCCTGAAAGATACTATTGATGTAGAGATGGATTTGGGTAATTTCC
ATATTGAGAGCTTGAGACTGTTCTGTAACCGGAAACATCCTTGATGCCGTGATGTAAGTA
TAGGCTACCGAATTGCCTGGTAAACAACGGCCTGTTTGGGATGCAGGAATTTCTTGGGAA
TTTCACATGAAACGGTTTGATTCTCATAACTAGTGGCCTGTTAAGAACACAGGAATAACG
TCGGAAGTTCCACAGTAAGGGCTTGTTTGATTTGTAGGATTATGAAAACGTAGGAATAGA
AAAAGCGCAGAATGGAATGTCATGCCCAATTAAGCAAAATAAATATCCAAGAGGTTCAAG
TGGATGCTAGATTTTCTATGGGATGCAGTGCAAATGATTCTTTAGTAAAAATTCCTACAG
ATTCAGTCCTACGAATCAAAGGAGCAACATATATAGGAAAACTCTAAAGAATTCTATAAT
CCTACAAAAATCTTTTGAACCGAAGAGGCCATAGATAGTTGAATTCTGGAAAGGAATGGT
AAATAATTCCTGCTATCTCAAACCAGGGCCTGATCGATCGAGCATCTGCTGATCAAACAC
AAGAAGCATCGGTCAAGCATTTTTGTCAAGTAGTGGGAGGTTTTATGCACGGACAGAGCT
GAAAGAAGCATACGTCTATATGAAAAGGAAACGGAAGTAAACACACATTGTTCCATACAT
ATAATTAAGACAAGCACAAAGCACAAACTGGACACACATATGTATATATCGATCGATGGT
CTCATCTCTCGAGTATAGTCTGTGGACCAATCAATCGAGTAGTAGTAGGTAGCCAATTAA
CCGAGTAACCGACTGTGCCATCGCCATGACACATGCATCTTCAAGCTCCAACTTCATGCA
CACAGTTTCTTAATTGTAGGATGGATCAAGCATTCAGGCTTCGATGAAGGTGGAGTGCCT
GGAGCTGGGCACGTAGACCCTGGCCCAGAGGTGCCTGCCCTTGATGATGTACTTGGCCGT
CGGCTCGCCCCCGAGCAGCACCGGGATCATGTCCGGGCTCTGCAGCACCACCCTCCCGTA
CACCGGAAGCTGCCCCGCCGGCGCCCTCTCCACCATCACGTCCTCCACGCACGGCCCGTG
CAGCCTGCATCCATCCATGCATCACATGCATGCACCATATACTTATACTATGATACACGT
ACGTGCGTAGTAACCCCGCCTTGCCAGTTGCCACTGATATACGCTGTAGTACTCCCTATG
TAAACTAATAGATCACTAACCGTTCTTATATTAGTATTAGTTTACAGAGGAAGTAGTGGC
GAAACTTACGAGTTGAAGAACTCCTTGATGTCGTCCTTGTCGATAGGGTAGCCGCGGGAG
AAGGTGATGAAGAGCGAGCGGAACTCCTCTGGAAGGGGGTCGATGATCATTTGGTGTTGC
TGGTGATGCTGCTGCGCCACCCGGACCGGTGACCACGGCGGCGCCATCGCGTTCAGCTGG
GAGAACCTCGGCGTCATTATCGCGTTCAGGTCGGCGAACCTCGGCGTCGTCGGCGTCGTC
GGCGTCTCGGGGACCGGGGTGGGGCCGGCGAACGCGGGAGAGCCGATGGCGCGCGGCACG
GAGGCGGTGCTGCTCCTGGGTAAGAAGATGGCGTCGTCGGAGGCGCAGGTGTCGTCGAGG
ACGACGCGGCAGACGGTCTTGTACAGTAACTTGACGCCGGGCATGATCTTGTCGCGGTGC
TCCTCGAAGTAGGTGACGTCGTCGATGGGCCTGTTGAGGAGCGCGTTGGTGCAGGGGAGG
AGCGTGCCGGCGCCGGCGAGCTCGCGGCCCGCGAGGCGGGCGAGGCACGCCAGCGCCTCG
TCGACGAAGCGCAGCACGACGGGGCCCGGGAGCGCGGACGCGCGGCGCATGAACTTGTCG
TGCCCATCGGCCTCGAGCCAAAGCCAGAGCGCGATCACCCACCTCATGTGCTCCCTCTCC
TGCCCGAGGTCGCGCACCAGCCGATGGAAGAAGCTGCGCTCCTGTGCGTAGAATATCGCC
ATCTCAAGCATTCCAGGGCCCATGGCTCGCTCGATCCCTCACCCTCACACAAACACACAC
GCTCTCTCTATCTCTCGCTCGCTCTCTCGCTCGCGGATGGCAATGGCATGGCGAGGCGGG
GTTGATAAAGGCCCGGCTCCGTGCTCTGGCGCGCCGCGCGTGCGCGTGCGTCCACAGAGG
TTTGTTGCGCGCCCCGGCTACGAGACAAAGCCAGGGCGCACAAGGGAGAGCACGCAGCAC
AGGGGCGCACGGCTCGGCGTACACACGGCACCTCTCACATGGAAAGCTCGGCTCGGCATC
GGTCGCCTCACCAGCCGGTTGCCGGTGCGCGCGCGGTGATCAGGGGCGAACTGAAGCCCT
AATTCCGCGGTGAAGACCAGTAACTCCACTGTGTTTACACGTCCGGTAGCCTCGAGCTCG
TCGCGGCTCTCCGGAAAAGGCCTGCGGGTAAGCTGCAGAGGACGTGGAAAGGAGGCCTGC
TGTTCTAGAAGCAGGCGAGCACACACCACCATCCGTCCATGGGAGGCGCGCTCCTCGATC
TCGGCCGCATATGAATGCATGCATCCAGCTCAGCGCCGAGATGGTCTCTTCTGATGGTGG
TTCAACGTGATCCTTTGCTGCTTACCGCGCCTGGTTTCACGCAAAGGTAAAACTGCCAAA
AATGGGATAAGCTTCGGTTACCAAAACGACAATGCTAAAGCTCGATGCAGCTGGAAAGGG
TTAACCCTAAGAAGTTCGAAATTACATCATCTCCCCCCAGGTCTTCCTCCTCACGCCACG
GCTTTGGTGGAGCGGATCTGGTGCGGTGACTCTCTAGGGCTGCAAGAAGGTATAAGCTCA
CCTCCGGGCTCGGGTTAACTGGACATCTTCCCTAAAAAAAACTACTTCTTTGCTATAGAT
TTCATAACTAGGACCAGGAAAACTTCTGAATAACACTGTGATTGGACCTGGTCGTCTAGA
TAGCAAATTCCGAACGGTGAAATCTCTTCACATGATTACCTGGATCTAAGTGAATTTATT
TTCTGGGGGGTGGAGAAGAGAAGGGGGGGGGGGGGGGGGTATAATTCCGTATAATTTTTC
CTATACGAAGTTTTTACGCCACCCCCCCCCCCAGCCCCGCCTCCCCCCCCATTCCCCCCC
CCCCC