Map Locations of contig_39024 (9838 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39024

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54273 1 242 bp None Not available Available None
MLOC_54274 2 2132 bp MLOC_54274.2 Available Available LOC_Os10g39670.1, FRAME:-2, EVALUE:0.0, 13110.m03644 protein protein kinase family protein, putative, expressed





CDS Structure of MLOC_54273






CDS Structure of MLOC_54274






Contig Sequence (9838 bp)

>contig_39024 9838 assembly3_WGSMorex_rbca.fasta
TTGAAGAAGCTCAAAATGGAACAGTCCAAGAAAGGGTTCTTGCCAGTGGTAACATGTGCT
CAAAATGTCTATGCTTGCAAGATGAAGGAGAATTCGTCTATTAGTGAACGTAAGATGGAC
CCCCAAACATTGTTGCAGCATCCCGTCCCTTCCTCAGGGTTGTGCTCAAAAATCGATTGG
CACGAGTTATAAATTCAAGAGACGTACCAATAGGAAATGCGTAAATCTAAACTCTAGACC
AACAAAAGGGGTCTTTCGAGTATCCCCAGGTTGGTACAAACTTGAAGCGTCCGAACGGAG
GTCATGGAGTCATGACTTGTGGGGGACATGGCACCAGTTGAGACACTGTCATGTGCGAAA
GTTGTGACAGTTATGCTCTTCGGGCAATCATTCAAACGCAGTGCAAGTGTAGACACTTAC
GCCGCGGGTATGGAGTTTTTGAGCTCGAGCTCAAATGAGCTCGGTGAACAATAAACCCTA
AAAAAATAAAAAATAAATCAGATTTTTTTTTAGGTGAAAACATTGACAAAAGTTTTACCT
ACTCACAAAATTCCATCTTCAAATCACATTCTTACAAGTCATGGCAAGAAAAACAATATT
GATGCTTCAAAAATGTTATTTTCAGAAGCATTTTGGAGTGCTGATTTTTTAAAAAAAAAA
ATTGTCACGCCTTCTGAATGTCTTTTCAAGATAAATTTTTGTAAGCACATAAAACTTTTG
TTAATGTTTGTAAAAAAAACAGAATTTATTTATTTATTTATTTATTTTTCTTCTGATTTT
ACTGTTTATCACAAGCTCAAACAAGCTAGCGAGCAGAAGATGACTTTTATCGCGACAGGA
CTATACAATTATACATAGCCCATAGGATGAGCAGAAATCTACTCTGGAGTCGATGTACAT
CCAAATCAATATTTTATGTACAAACAGGATATAGGTATGTTTATTAGCTTTAGGTACAAG
GACGGACCCTTCCCAACAACCAGCAACACTCATTCAAAAGAACGACCGTGTTTGCTGCCT
GTTTCAACAGACGTTATATACAGCAAACATGGGCCCAAAAATGCACTACCTATCACAGGC
ATGCCAAACCAAACGAGTTCCTTCAATCGCATTCACAGGACTCTTCAGTGAAATGTCTTC
CCGCAGATCTTCTAGCTCCTATATACCGCTCAGATCAGCGCAAACTTACGATTACATACA
TATATATGGGAGGGATGCAACTTCTCCAAGTTTAATATGCTCTTCATTCATGGACCTCTT
GCGCTCTTTTGCCTCTTCTCTTCAAGTTGTGAGGCCTCGTTCAACATGTCGGTGGCGTCA
CTCTGCATGTCTAACTTGGACAGGGCGACTGCCTGCATGTAGAAAGCTGTCGGCCAATCG
GGATACACGCATTGCGCTTGCATTGCGTCCCGGAGGGCAGCGTCAGGTTGGTCACACATC
AGGTGGCACAAGCTTCGCCTGGCGTAAACCGTTGGTGACACCATTGTCCCGACATCAACA
AACTGTGAAACAATCACAGGCAAAGGATTGATCAGAAATATTTTATAGTGACTTGGAGAC
CATCTTATAGATCTAAATGAGGCACTACCTGAGTATAACAGTCTATGGCTGCTTTAAAGT
CCTTGTCTCGGAAAGCAAAGTCGCCCTGTTTCCGGGCGTCCAACATATCCCTCATCTGCT
GTGTCCATTCTTGGAACGATAACTGCAACATGGAGACCGGTGAAGATACAGCCCTGCAGA
AAGGACATGCTGGAAACAGAATGCAGTGCTCTTTACCTCGTTACTCCCTTCATCATCTCT
GTAATGCATCGAGACTAGAATCTGATGTATGGCAGTTAGGTCCATCCTTGAACAGGCTTC
TCCCATGGCAGAAAGAGGGTGCTGTGGCTGTGGAGGAGGGCTAGGTGGTGCCTTTGATAG
TTCATCAGGTTTCGCAACTCCAAGCATCACATAAGATGGCACCTGCTTTGTATTTTGCAA
CAAGAACAGCCGTAATCATCAGAGATATATGTCATGTTACTCATCTAGCGAAATTATGTC
ATTCCTAACACAGAAGTAACAGAACACAATGTTACAAAATTCCAATTCCACCTAGATAAA
TAAGAAAAGTTCTGCTTCGGTACACCCCCCCTAAACACAAGGACGGCTCAGATTAGCCCA
TACCTCTTCATAAGAAAGGGCATGATAGTCTTATTAGAAACTCTTCGTCCGCGGTACACG
ATGTACACGTGTACAGCAAGCTGGGCCGGCCCATCTTTTTTTCTGATTTTAAACCGCAGG
CCCATCTTTCTTTCTTTTTGTTCGGTTATTCCTTTCCTATTTTCGTTTTCTTTTTTTTTC
TGTTCATTTTTGTTTTCCTTTTTCCTTTGCAATGGGCAAACTTTTTCAGTTTTGCTTTTT
TTAAGAAAATCTATGAAGCTTTTTAATATTGATGAACTTTATTCAAAATTGATTAACTTT
CGATAAACCTTTTTCAAAATGAATGATTTTTTCAAAGTCAATGACTTTTTGCCAAAATCG
ATGGACTTTTTTCAAAATTCATGAAATATTTTTCATATGATTGAACTTTTTTTTCTAAAA
TCTGTGACTTCTTTTTCAATTCATGGTATTTTTAATTTGTGAACGTGTTGTAAATCTACG
GAGCCTTCTAGCCTACTCGGACACCCTCCGTTGAACATGATCTACTTTTAGACATGCTTC
AAATAGCCTCAACATTTTTAAGCAGGTGGACATGCACATGGTAGGCATCTATGTCCGGTT
TGAACGATTTCCAAAACTATATGCAAGTTGCAACATGTCCATGCATTTATCAGCTTTTCT
TTTCTAAGAAAACTCTAGAAAATGCAAAATTTATCAAAACTAAAATAACTTATCATGGTG
CCTTGAATTGGTCATACAAGGCCACGGGAAAAATTGCGGCCATTTCAAGGATGTCGAGAA
ACAACATGCTCTCAAATGGAGCCTTGTGACGTACCCAAACACCCTATGTTGAACATGGTC
ATTTTTTGGATATGCTTGAAATTAACCCAACTTTTGCAAGCAGGTGGGCATGCTCATGGT
AGGAATCATGCCAAGTTTAAACGATTTTTGACACCATATGCAAGTTGTGACACGTCCGGC
AATTATAGCCCTTTTTTGACCAAGAAAACTTCATAAAACATAGAATTTGTAGAAAACCAA
AAAACCTTGTCATGATTTCTTGAACGGAGACTTTACAAACATTCTACAGATGTCATTCTT
GAACGGAGGCCAAGGAAAAAAGATAGGGTCATTTTACTGATGTCGAGAAACAACTTGCTC
TCAAATGGAGACTTCTCACCTACCCTAACACCTAACGCTGAACATGGTGACTTATTCTAC
ACGAATACAAAACATGTTTGAGCAAATTAAAAAAAATGGTTTCAAATTTTCGTTCTTTTT
TTTTGAAATCTTCTGAAATTCCAAATTTGTTAGTGTTTTTCATAAAATGTTAAAAATATA
AAAATGTCCGTGTTCAAATTTTTGTTTGCGCTTTTTAAAGTGCTCGTGTTTTGACATTAT
GAGCAATTTTTAGTAATACAAACATTCTGAGGAATTCTTAAAATGTGCGTGTTTTGAAGA
ACTTGTTCATAGTTTCAGAAAATGGCCGCATTTTCAATGTTCCTGTTTTCAAAAAATGTT
CGTATTTTCAAAAAATGTACTCGTTTTCAGTTTTGTTCCTATTGTTTTTATAAGAAGTTT
TAGATTCCGAAATATTGTCCTCAAAAGGTTTGAGTTTTTAAAGTATGCTCACAAATTTTA
AAAAAGTTCGGGCTTCAAAAATATTACTTTGTAATAAATTCACGTACGAAGTTTCAAAAT
TAATAATATTTCGGGGCTTGTGATATTATGCACTCGCGGGAGCTTGTGTGTTAGGTCCGC
TCACCCATTTTAGTATTTGTGAATTTGTATTTAAGTGCTGCCTCTTTCTTTGGTTTCTTT
AAGTGTGTCACCGCAAATCTAGCACTTGAGGCAGCCAGCCGAAGTGGTTAGCAACCAAAG
CGGTTCTATCCCTGGTCATGAATTCAATTCCCATCTTGGGCGCAATTTTTATTGATTTTC
CACCACGCCCTACCGCAAATGGGCTGGCCTAGTGCCTGTGTCCTATTGCGGCGTACAGGA
GGTCCTTCATCGTATGACGTATATGAGTTGTCAAAGGTCTAAATTACCCTTTATATGCTT
TGTGAGGGGGGTGTACTGAAGTGGGGCTCAAATAAGAAACATAACATACTGAACACATTT
TGGGACATACAACCTTTGCACAGTCCTGAAAGACATAGATCATATACTCTATGCCGAAGT
GGCCATACGAGAGTACTGAGTACTTATTGGATATTTAATATCATCACTTCATGCAATCAA
AGTCCAAAAGTCATCATCACTAAATGGCTGGTCACTAGTCCCTCCATCCAGGTATATAGG
GTGTATTTTGATTAGTTAACAAGGCTTTAACCAACAATTACTTCGTTAATATACAGTTTA
TGTGATACAAAATCACAATCCTAAGTGCATTTGAATACAAATGCAATGACATCAACTTTG
TGTCACATAAACTACATGCTAATGGGCTAGGTGCAACATAACGCCACAGTTACCCACATT
TCGACCAAAGGGCCTGAAAGGGCCAACGAAAATACTTCTGAACAACAAACACGAAAAACT
CTCAAGTACATAACTGAAATGTCAGGAAACATCATGGGAATGCGGAAGTTACACTATCAT
GTCATTAGCTTGAATGATAGGGAAAAAAGGGGTCTGTAGTTCAATGCTTACACATCTTAA
TTCATAGTAAAAAAATAGAAGAAACATAAGAATAGAGGAGTAGATGTTATTACCTCTGAT
TTTGTTTGCAGTGGCTCAAGAATGGAAACCAACTTTTTTATATCAGGCCGATCTCTTGGT
TCGTACTGCAAACATTGAGAAGCAAGATTCACCAAAGTAGTAGCCTCCTCTGTTGAGTAG
TTCCCCTCCAAATGTGAATCCATTAGTGCTTGGATGTTTCTACTTCTTATCATATCAAGT
GCCTGCGTGCAATGAATGCATATACCCATCATTACCAGTGTGCACACTATTGTAAATTGT
CTTGTTAACTGGTGATAGACTTTGGTAAATAATTATACAGGCCATAGTTTCTACACACAA
CGAATTGAGTCAGTTGCACAGAATTCCAACAATATTTAGTGGGATGGTAGAGGTTTTCGG
ATATGGGTGTTCAAAATGATAAACAAATTATCCAACATAAGAAGGAAACTGTATTCGTGC
GACCCAAAAATTGCATGAGGCTACCTGCCTGAGGTGCTAGTTGGACTAATAAAATGCTCA
GGAGCACATGGCCTTTGGGTGCAGCGTTTGGACGGTGGCACGGGTATTATTCAACAGATT
TGGCTGGCGAACCAGTAGTAGATTATGTGTTTGACTCATGTAATCTCATTTTCGACTGCT
CACAGTTGTGTTCTATCTTTTTTCCTTTGTATTCATGACTGTTACGTACATTGGATAATT
TGTTAACAAAATGGCTCTGTGCGTCATGATGATGCAGAGGCCGTGCCTATCCCCTTTCGG
AAAAATAAAGTCCGAAGGGGCATAGGGTGAGGGTGAAGTGAACTCCAACCAGTAAACGCT
GTACTGCCACCGAGTGTGTCACACCGATCATGCCTGTCATGAGCAAGGCAAGTGACACAG
ATGACGCAAGCAACAGTGTATAGCATTCAGCCGGCCAACACAAGGAGCTACTCTATGCTT
GAAGGGGGGGGGGGGCTAGAGTGTTTCACTCGGGTAAGCTGACACTGCCTGGTGGGCCAA
TCATACAGCACACGAATGACTTCTGTAATGAGCATTCCATTGGTCAGAAGCATAGATCTC
AGCCTGGATGTGCAATGACCATGTTTATTGGCTAAACAATACTGCAATCACTTCAAATAG
TAATATAGATTATATGTAAGAATTTCTTGGCAGAAAACCTGTGTATGCGTGCTAGCTTGT
ACAGCTAAATATGAAATTCAACATTAATGTTTTCGTTACAGTTCAATCTGCATGCATGGT
TGTTCGACTGGTATTTGTGCTGAGAAAAACCAAACAAGTATCTCTTTGGTATAATTATGT
ATTTCTTTAGCTGAATATGATGGAAGCTAAGAAAACATGCTTAACAAGGAACTTACATGG
GAAGGAGGTATGCGCTTTCCACTGAGAAGATCGATGAGTACAGTGCCAAAACTGAATATG
ACGCTTTCTGCTGTGACCCTGCCTGAAAGAAAGAAAAAATATACTCAAAATATGCATCGG
TGGTGCCTATGTCTACATTAATAATGCAGAAAAGACTCCTTATGACCTCTATATAATGCT
CGCTCCGGCCCTTTTTACTCCGAATTTAAGATTTGTCTAAAGTCAAACTTCATAAAATTT
GACCAATTTTATAGAGAAAAATATCAACTTTCACAATACGAAATCAATATCATTAGATGC
GTCATGAATTTAGGTTTCATATTGTATAGCTTCAATATTGAAGATGTTGATATTTTTTCA
TACAAATACGGTCAAACTTTACGAAGTTTGACTTCAGATAAATCTTATATGTGGAATCAA
AAGGACCGGAGGGAGTACATTGAACCAATATCTTAACAAAGGTACTATATTTGTCTTTCC
AGTGAAAAAAATTGTTATTCAGTGCCAATAGATTAAAGCTTCATCCCCTGAAATTCCTAT
TTTTTTGAGAAGTGGAGGATAGCAATAATAAAACTGAACTCCTACAAGAAGAAATATTTC
ATTACTAAATAAGAAAAGGGCTAAATACCATTTCTCAGATATTCTGGAGGTGTGTACGCT
AGATTTGTGCTATAACTTTTCCCATCCCTGCTGTTTTTCATCAGACCAAAGCATGAGAGA
CGCGGATCACCATTCTGCAACCAGAAAGGTTGTTAGACGCTTCGCTTACATGCATGATAA
TTGGTACAAAATGACATGTTCAACTGTTAGATGCTATCAACAACTCATAAAACCTACTTG
GTGAAGTTGTAAATAAATTGAATGCATCACATCTTCCAAATGTCAATGTAAGTTCTGCTA
AACAATTTTCCTAGTAACCGAATTATCCTAGTTTATATGTGTCATAAACAGTGCAGAAAA
AGACAGCTTACTGCTAACATTTCCGTTTCTTGTTAACAGAAAAAATCTTAACTATTTTTA
GGTAAAAAGAAATCTAAACCTGAAAACCTCTAAACATCGCCACCATGGCCATTAGCACAA
GACAGTAGTCATTGGTCTGACAGAGTTCTATATACTTAAACAGACTTGTCTTACTGATCA
TTTACCTCGTCAAAGAGGACTCTGTATGCATTTAGGTCATGATATAAAGAGCGTTCCTCA
TTGCTGCAATATCCCAATGCTTCGGCAATGTAGCATGCGACTCTCAGACGCATAGCCCAT
TCAATAGTCTGGTTTTCCCCTGCACAACGGCAAAAGTATGGCGAAGAGCAAATTAATTTG
ATAGTTATTTCCAAGGCCGTAACAAGTATGATAAGTGCCATCACTTGTCGATATTTAACT
CAAAATGACCAAATTAGCAATCACAAACAGGATGTGTGCAATATTTCCCTTGTATCCAAG
GTGATAATCAAAATAACAAGTGAGCATGGGAGCTGGGAACCTAAGGGGAGGTCAATCAAG
CATTAACTATCAATATCCTAAGTTCTACATCAAAATGCTGCAAGCAGCTGCACTGAGTAG
AAGCCTTGTGCAGAAATAATAACTTCCCTTTGGTGATAAATGTCATCACCAGTAAGTCTT
TAACTCAAGAATGACAGAATTAGCAATCACAAACAGGATTTGTTTAATATACATAGAAAC
TCATATCATTTGTGATAAACTACACTCAATTGCAGCCAGGGAGATAATCAAAATAATAAC
AAGTATGAACTATCAATTGCTTAAGTTCGATATCAAAATGCTGCAAACAACTGCACTGAG
TAGAAGCCTTGTGCAGACACAGTAACTTGCCAAATTCCGCACTTGCTTACCTCGTCCCAT
AATTCAGCGACATGCACTAAAGCAAAGGATCCCCAGGTTCAGTAGAATCAAGAAACGGCC
CGGGCAACTACTAAGCAAAGACAATATGCGCGGGGCTACTTGGGGGACTCACAGTGGAAC
AGGTGCTTGGCGAGGGTATCGTTGGACATGAACTCGGCGACAAGCAGCCGCTCGTCGCCG
TCGCAGCAGTAGCCGATGAGGTTTGCCAGCCTCCGGTGCCGCAGCTTGCCCACCCCCTTC
GCCTCCTCCTGGAAACCGACCAAACGAGCAATTCGTCAAAACCATATGTCCCCTCTAAAC
CCCCAATTCAGCCACACACCAAACCACGAGCTCCTCGCCTCCTCTCCCTCCCTACCTACC
GCGAACTGCTTGGGGTCGGGCCAGGCATGCTTGGCGAACTTCTTGACGGCGATGGCGCGA
GGGGCGGCGCCTCCCCGCAGCCGGCCCCTGTAGACGAGGTTGGGGGCCTTCTCGCCGCTC
TCCGACACGATGTTCCCCGCCGCGAAGCCGTCCGTGGCCGCGCGGAGCTCCGCCAGCGAG
AACTCCGCGAGCGCCGGGACCTCCTCCACCCCGCGCGCGGCCGGCGCCGCGGCCGCCGGG
GGAGCGGCCTTCTGCGCCTTGAGGGAGAAGGAGGGGCGGTGCGGCGGCGGGGGAGGGGGA
GCAGGCCGCCGCGGGCCGGGCGGCTTCTCCGCGTGGACCCACGACCGCAGCGAGGAGCCG
CAGCAACCCATGAACGAAGCGTGAGGAGAAAAGTCCGTCGGCGTCTCCCGCTGGCCGTGC
CTTTTGTTGCGTGCGCGGCTGTGCGCTCGTGTGCGTGGGAGCGAGGAAACGGAGACGGTT
TTTGTAACTTGCTTTGCTTGCGGCTTCTCTGGGCTCTGGTGTGGGGTCTCGTTCGCTCGT
GCTCTTTGGGTTACGACCACTGTAGTCTGTAACGCAGACGTCGGCTGAGTCCATTTCTTC
CTTACCAGATGACGCACATGTGTACACACACGCTTGTTATATAATACGACCACCCAAGCT
TGACAGGTCATGCACAAATGTTGACCGAGACAAGAAACTACGAGCATCTCCACCCGCGAC
CTCAACACGCCATCTTCAGGTTATTTTTTTCACCGACGAGTGAAAAACGGCTTACTTGCG
CCCTTAGGAACCGGTTTTCGTTAGGACCGAATTGACCCTGACGGTCCCAAGCCGAATCAA
GTGCGTTGGGGGGCGCCCGGAGACGGTGGCAGAAGGGAAAACGACGCGCCGGGTCCTTGT
CAGGCGAAAAGAGGCATTTTCTTCTCCAGAGCGCACCACACCTTCCGCCACCGTGCCGAT
TTCGGCGCCACCCCATCTGCCTACCGCCGCTACAAAGGCCATCTCCCCATCGACTTCGCT
GCGGATTCGCCCCCTCCCGTTTCTTGGCGAGTTTTCTCGGCACTCCGGGCACGTACACGG
CTGCGCATCTGCCACGCCCGCCAGGTGTTCGGCGATTTGCCTGGCCCATGGACTCCGACG
ACGAGAAGACGTTCGCGACGCTAATGGAGGAGGAAGTCGATGTCGACGCCCAGGATGAAG
AGCACCGCATGGTCCTCGCCTCTCTGGTTGGCATGTTCGCGAGCAATGCAGAGCCACGAC
GAGGTGGCTCGGCGTCGGGCCGGCTGAAGGCAAAGCAGAGGCATTGACTGGAAGGCTATT
GCTTGCTCTACGCCGACTACTTCGCGGACGCTCCATTGCACGGCGAGAAAGTATTTCGGC
ATCGTTATCAGATGGGTTGAAAGCTCTTCCTCGGGATTGTGAATGCCATTCGGGAGTT