morexGenes - Barley RNA-seq Database

Contig contig_39012
Source Contig contig_39012
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39012 (7246 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_39012

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54267	1	2297 bp	MLOC_54267.1	Available	Available	LOC_Os01g21034.1, FRAME:-3, EVALUE:0.0, 13101.m02235 protein pectinesterase, putative, expressed
CDS Structure of MLOC_54267

Contig Sequence (7246 bp)

>contig_39012 7246 assembly3_WGSMorex_rbca.fasta
GGTCTCGATAATGGGTCGAAGGCATCAATTCTTCCCTTATCAATTTGAATNNNNNNNNNA
ATCCAATGGAAGCTGCACATGTATGTATATATATATATATATATATACATACATGTCAAA
CAAAACTAAAACAAACGGGATGCATGATGACATTTTTCGCGCAATTGCCCGAGGCACCTG
CCTAGTTAACGAAAAACCACATAAATAAACAATATCAGTATAACCAAACACATAAGCCAC
CATACTTATTGCGGTGAAAAGAATGCCACAAAACTAATAAGATGAATCAGGCAGGTGCCC
CTCCGCTCCACTGGTGTATTGGATTGGATGTACTCGAACTCAAGATGAATTGGGTGCTTT
ATGATATGACAGGAGAAGAATTGGTCATTCACAGACCTGCGGAGAAAGGGATGGATGTGC
CGGCGAGCCAGACGTCGCCGTCGATGAAGGAGCCCACCGTGAATGTGTGGTAACCCTAGA
AAAGACTTTGCAATTAAAAACAGAATCATTTCTACATAGCCAAAGCGATCATAATAAGGC
AGACGCTCCCACCCGTATTAGGATACTAATGATGTCCACTGTACAACTGCCTAGATTATT
CCATGCAAACTAATTACGTCTTGATACAGATAATCATTTGAAAAAGAAAAAATGTATGTC
TAGAAAATTTAAAAAACTATAGATTGTTGCGAAAATTTGAAAAATAATAGCATGCTTCTT
GTCTTACTTCCCGTGCTGCTTCGGTACATCGATGTCGATGATCTGAAAGTGCTCAATGGT
GGACTTTGGGTAATGTTTCCTCCATAGCATCCGTACCGCCCCTGCGATGGTAGAGGTGAT
GTTCATTAACTCAATATGTTCCAGCTTCCTATTAGAATCGAGAACTTCGAATCGTTCATC
CCTCAAGTTCAGGTTGAAGACCCAATAGTACCTGCTTCCTTCAGGGTGTTTTGGATCAGA
ACACTCAAGCTAATTATATAAGAGCACTACACATAGCAAATAGACTAGACATAAACTGGT
AGGTTGGACAAATATCACGAGAAGGACAGTCCAGGCACTTGTGGCAGTGGTGGCCAGACC
GTTCATGGCGTCGTGTCGAAAACATGTCTCATAGTTTCAATGGGCTTATAGTCGATCATA
CTATATTTATTTATACATAGGAAGAAACATGTTTAATCATGCCCTGAGGATAAGCCATGT
CCGTGAACCTCATTAATAAATTTATATGTTATTTCTGTGCTTGTGTGATCACTCGTCGGA
TCGTGGTGATTCTAACAACTTACATATATGTTCACTCTGTTGTGAGCTGTAGCATGTTTG
CAATGTCAAAAAATTGCCAGTGATGTGTTTTATCACAAGCGAAGCTGAAAAAATAGCCGT
GATGTCGTCCTGGTTATAGTAAAACCAGAACCACTAGAGATATGTGTCGTTAAAAGATGC
ATCCTGTTGTGCTACCGGCAAAGAAATTTCAGTCTTGCTAACTATCACTCGACTGAAACT
TCGTTAAGGCTCACTCGATGTTATATCTGTGAAATCTTATATTAAGATTCGTGCAAAAAA
TAAAATTAGTTTTTTTCCTCTATCTTGCATGTTACGTTAGTTTGACTGAGATTTGATTAA
ATCTCAGTTGAATGAGGCCTAACCACATCCAAGAAAATTAACATAAGCCCCTTTTCCAAT
AAAAGTTGATATTGGAAGAGTTGTGCCAACACCAAATAGCCTAAAATATATTGTGAAGCC
CCAATACTATACATTTTTTAATATAAGTATTACTTCTTAGATAGCACAATATATAGTTTA
CATTTATACGTACGTGTCAAAACTAAAACAAATAAACGGAATGACGATGACATTTTCCGC
ACAATTGGCCGAGGCACCTGGCTAGTTAACAAAAAACCACATAAATAAACAATATAAGTA
TAACCAAATGAACACATAAGCCACCAAACTTAATTATTGCGGTGAAAAGAATGCCACAAA
ACTAATAAGATGAATCAGGCAGGTGCCCCTCAGCTCCACTGGGGTATTGGATTGGATGTA
CTCGAACTCAGGACGAATTGGGTGCTTTATATGATATGATGATAGAAGAAGAATTGGTCG
GTCACAGCCCGGCGGAGAATGGGATGGATGTGCCGGCGAGCCAGACATCGCCGTCGATGA
AGGAGCCCACCGTGAAGGTGCTGGCCTCCGATGCGCTGGTGATGACGCGGTACCCCTTCC
ACGTCACCCTGCCGGACGTGGCGGCGCCGGGGCCCGTGTTCTGGTACTCGCCGTAGTAGA
GCGTGTCGAGCGCGAAGGTGCCGTCCCACGCGAGCCAGCCGGCGGGGTTGACGACGCTGT
CGAGCTCCGACTGCATGAAGACGGTGCGGGAGTACTGCTTCCACGGCCGGCCAAGGTAGG
TCTTGAAGCTGGACTGCACGGCGGCGAGGTCGGAGGCCGCCGCCACCTTGCACTTTTGGA
TGGAGATGCCGGTGTTCTGGTTGGGGTCCGTCCGGCCCTGCGCCGTGTAGATGTTGCTCT
GGTTGGGGAGGGGCCGGCGGGCGTAGAGGTTGCAGCTCTGGAGCACGGCGGCGGAGTTGC
CGAAGACGAAGTCGATGGTGCCGTAGATGTCGCACTCGCGGAAGAACTGACGGAGGGAGT
GCACGTAGAGGGTGTCCTGGTAGCCCACGAAGCTGCACCGGTAGAAGGCCGAGAGGTCGG
CGCCGACGCGGAGCGCCACTGCCTGGTGCTTGGACGGGCCGGCGGCGTTCTCGATTGTCA
GGTCGCGGGCTAGAAAGTTGTTGCCCACCACAGCTGCAAAATTACAAAGTACAACATTAG
TGCAAAAACTTACACGGATGTGGGATTCCATCCACTGAATGCAGAAAGCTTCTATTACGG
TGCAAAAACCACAAGGAATGAATAGCCCGTCTCTTTCCTCAGCTTAATTGGGTATTTGGA
CCACCTTCACGTCCTTCCAGGACGAACGGGCGAATAGGATGGATGAACCGACGCACGCTT
AGCTAGCTATAGCTGCATGGAGAGCGTCGCCTCACATGCACATGCAGGAGCCACGCGCAA
CGCAACAACGACGACGAGGCCCGCCTCGGCCGTGTGGTCACCGTACCGCCGCGCTCGTCC
CACCCTGCTCTTGTTGTTCCACCGACGACGACAGGGACAAATCGACACCGACTCCCGTGC
GCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCGTGCAATGTGCAGTG
TGCGCTACAGATCGGAACAAAGGGAGCAGCAGCAGCAGCAGCATGAATTCTTGGCGGAAT
GCAAGCAGGCTGATCGGAAACGTACATACGTATCGTACGATTGAATATTATCCTTGTCTT
GGCGGGGTACGTTTGGAACAGCCGCAGGGGCATGCCTGCATGCGCTTGCCGCCTGCCGCT
GTTGGTTGGATCAGATTCGACGATCCAACACACGCGACATGCCCTTGTGGTCTCGTACGT
CCTTGTTTTCTTGCTTGCAGCATGCTAACAAGCAGTAGTAATCACGGGTGATGCTTTGGT
TTCTTGGCACGGTTTCTGTGCTGTTCGTTTTGTGGGCTTTTAATTTGATGGGTCATCTAG
GACTAATGTGGAGTACTCTCTTGCTTGGAGACAAGTGATCGATGGTGATTACTTTGTGGG
AAACCTTGACGGGCCGGGCTTCACATCTGGACGGTGTATATTTGTGGGTCTTGTGGATGG
CCAAATCAGCCGTGCTGTAACTATTTTCATCTGGTCTCTGCAAATTAATCTGACAACTCT
CTTCTGCCTGGTCTTAATGGATCGAAGCCCTGAGGGGCATGATCGACTTCAAAAAGAAAG
TAGCTAGCTAGGGACACATACATGTATACGGGTCCCGGTTTATATGGTATGCTAGTCCAT
AATAATGCGCGGTTGATTGGTTGGAGGTAGTTGCAGCGTAGCAGTCCATTTGTACAAGCA
GCCATGTGGTCGCAATAACACGTACTGTACGTACACAGGGGGCAGACAGCTAGTGAGATA
ATAGTACCTATTGGATAGATGCATGCATGGATATATAGATTTCCGTCGGGGCACTTGAAT
GAGTTCCTGAATTTGTGGCGGAGCGGCGAATGCGGGCTCGCATGCAGCTTTGCTCGAATG
CATGGCCACTCTCTGTGTAGTGCGCGCCTACACGGAGCACGTACGTACGTACTCCCTCCG
TTCCTTAATACTGTATAAGTCATTTAAGAGATTCTACTACAAATTATATATGAATGTATA
TAGACATACTTTAGAATGTAGATTCACTCATTTTTATCCGTATGTAATCCGTAGTAAAAT
CTCTAAAAAAAACTTATATTTAAGAACAGAGAGAATACGTTTTAATTCCAGGTCCCCTAC
CGCCGCTACCGGCCTACCGCTCATGTACATCCACTGCCGCCGAAATGCATGAGACCGAAA
CCAAGCATCGCACATGCACCATTTGTTCTCTACTTTTGTACCCCCTATTCGTGTGTGGGA
TCGATGTGCTCTCTTGGCACTGCCCACTTCACGGTGCACGCAGAAGCTACCGCGTGGGGC
CCGTGGGATGTGGCTTAATAATATTCTCTCCGTCCGAAAATACTTATCCTAAAAATTAAT
ATAATGAATGTATCTATAACTAAAATAAGTCTAGATACATTCATCTCTAGGAAAGTATTT
TCGAACGAAAGGAGTATAAGTCTTTTAGAAGATTTTACTAATGGTCCACATGCGAAGAAA
AAATGAATGAATCTACATTCTAAAGTATGTTTATATACATTTATATGTAGTCCATTATTA
AAATCTGTACAAAGATTTGTACTTACTCCCTCCGTTTCTAAATATAAGTCTTTCTAGAGT
TTTCACTAATGGACTACATACGGATNNNNNNNNNNNNNNNNNNNNNTATAGATTCACTCA
TTTTGTTTTGTAGGTAGACTCCTAGTGAAATATCTTAAAAGACTTACATTTAGGAAGGGA
CGAAGTAACTGTGATGGTAGCTTAGCTAGCCAGTGTGCCCTGCACTGACTGCACCGACGC
ATGCAAGGAGGCAAGTTAAGGTTGCACCGACATGGATCACGGGCGCACCTGTCCGCACAT
AAATGCCACTACTACTACTACTCCACTTGGGGCTACTACTAGGTGGGACGACACTCCGAC
GGTGCAGGCCCAGATACCACTAGCTACCTTTTATCTTATCTACCGGCCGCGTTCGCACAG
GTGTGCGGCATGCCGCTGCCTGCGTGCCTCATCGATCTGCAACGCACGGCTCGCCGTGGC
AACTAGCTATAACCTATAGGAAGGAAGATTGCATGCATGCATGCATGCACAAGACAAGAG
AGTCCGTCCCACGCCATTGTCGACACACACGCACAGTGCCATTATATTTCCATCCAACCA
GCCAGCCTTGCTTGCTTGGTATAGTATTTCCTTCGAGATAGTTTAACTATGGGATATATG
GCCGGACCGGACCACGTGCGGCGCAGTTGGTGTGCGTAAATTCGTATAGCGACAGCAGAG
CATTTAGCTCTTGGATAGACATGGCACGGGCCCGCCCCGGTATGAATTATGAATAATGGA
TCGATCTGAGTCTGACTGACAACGTCTAGTGCACGGGGGGAGTTTACCGTGAACGCCACC
TCGGACTAGACAACTCTCAAATCAATACTAGTACTAGTAATTTACTCCCTCAGTTACTAC
ATACTGTATTTGTTGTTGGGGAAGTAAATAAGTGCAATGCAGCAGTATCACTTACCGACT
GTGGCGGAGCGGAAGGTGGTGGAGCCGTCGACGACGTTGAGGCTGGCCTTGATCACCGTC
TTGCCCATTCCGTCGCCCATGAACATGAGGTTCTTGTGGTTCTTCCCCACCTCCACGTTC
TCCATGTACGCTCCGGCCTTGATGTAGATCACGTACCTGCTCTGGGAGTTGGTCGGCGCC
GCCGCCACCGCCGCCGACACCGTCGTGAACCCCCCGCTCCCGTCCTTGGCCACCACCGCG
TTCGCCTTGATGCCCGACGCCGGCGCCTGCAGCAGGCGCCGGTCCCCGGGCCGCACCCAC
CGCGGGAACCCGCCCTTCACCACCTGCCCGTACCCCGTGAACGGCTGCCGCGCCACGCTC
CTCTCCGTCGACGACGGCTTCTTGGCGCCGGGCAGCTTCTTGGCCATGGCCAGCGAGTTG
CTGACCATCTTGGCGATGTGGAGGATGCCGGGCTCCATGTACCGCCGCACCTCCCCGCCC
TTCTGGTACGAGAAGCCCTCCAGGCAGGTCTGCTGGTTGGTGATGGCCGCCGAGAGGACC
GTCATGGCGTGATCCATGGTCGGCCGCCTGGCCGCGGACGGCGACTCCAGGTCGGCCGTC
GTGGCCACCAGCTCCTCCATGGTGGTCTCTAGGAGCTCCATGCAGTCCGTGACGGCGAGG
TGGTCGCGCCCGCTGAGGGACCTCTCCCGGAGGTAGCCGGAGCAGTTGGCGGACATGGTG
GTCACCTCGGTCTCGGTGCGGTTCACGGCCGCGCAGATCACGTCCGGGAGCGGCTTCTTG
TGGAGGTCCGGGATGTCGGCGAGCGTCGACAGGCAGAGCTCCGGGTACAGCGTGCCGTCG
CAGTGCGCGGCCGCGGCAGCCTCCGCGGAGGGGTAGAAGGGGACCGTGCCGGAGGAGACA
TCGTCGGCCGTGGCGCCGGCGGCGGCGGCGAGTAGTGTGAGGGTGACTGCGAGGAGGACG
AGAAGAGGCCTTGGTTTCCCGTGGTTGTACAAGCAGGGTGGCATTGTGATGTGGACGACA
CGACTCGACTGCCAAAGAGCGTGGGACTGAGTGAGTGCGTGATGGACGCTAATGGCTGGT
GCCTATATGTACTTGTGGAATGCCAGAATCTTTTGTATTTGGATTGGAGGGAGTTGGCTG
CATCTCCTAGCCGTTGGATCAAGAAAACCATCCGTGACCGAGATCAAACCATCCGTGACC
GAGATCAAGGCGTCGCACAGTTGACGAATCAACGCCGATATTCTACCACTAGTACCCACC
ATTGTTGCCACCTCCTAAATTTTCATTTCACAGGCCATGTCCTTCACTTTATGTCTAAGA
GTGAAAAAAACATAGAACAAATTCTATGTGGCCGATGCTGGATGACTGATCGAACACGTT
CGGACACACTTTAGATCATCTAGCAGACCCCGCATCCGTCCCCGACCCGCAAAATAACTG
TCAAAATGCGGGTACGGACCGAAAAGCCTGCCCGACCAGACCCCGC