Contig Data
morexGenes
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Map Locations of contig_38995 (7375 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_38995

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54243 8 2496 bp MLOC_54243.2 Available Available LOC_Os09g29660.1, FRAME:-2, EVALUE:0.0, 13109.m02941 protein white-brown complex homolog protein 11, putative, expressed





CDS Structure of MLOC_54243






Contig Sequence (7375 bp)

>contig_38995 7375 assembly3_WGSMorex_rbca.fasta
TCTCCTCATTTAACTCCTCATGCAAGTTCTGGATTGGAGGGTTTGGAGGATAATAAATGC
TCTGTAACTTGATTTTAGTCTCTTTAGTATTTGGATCCAAGCATGGGTGAAGCTAACAAT
TTTTAGTCTCATTACTTTTAGTCATGNNNNNNAAACGTATCCAAGCACCCTCTTAATGCA
CCTGTAGCGGATTTATCTCTTTAAAATACCACTCCTTTCCAGGGAACTCTACCGGGCCGA
ATCATGTTGTCCACCTGCCTCGATTTTAATTGTAGACAAAAAAAACATACCCCAGCGCAG
TGAAGCAAATATACCAACATTAACTTTGTCCCATTTTCATTCCCAATTTGGATTGGGTTT
GTCCACGGCGTATACATTTTCATTCCAAATTTGAATTGGGTTTGTTCCGTGCGTATACGC
CGTGGACGTCTGCCTTGTCCTCCTCTAGTTCTTCCATGGCTCACCTATCGGTGGAACACA
AGGTAGTAATCCCCCCACCCCATTGATTTGGACCTCCCCGGCTTCTTCGCCCTTGCCACC
ACCATCGATCTTTCGCCCTCTTTGCCACCCTCGATGCCCTCACCCAGCCTCCATCGACGC
CCCTATTGCCGGTGTTATTTTCACTTCTTGCCGCCCATGGTGTAGCTCGTGGCCCGCATC
CTACACCCTCTTCAACCAGGGCCGTCGTTGCCCCTAGCATACCACCGTATCACCATCGCC
AATGTTAGAGGACGTTGAGTTTCACTCCCCTGCTCCTTGAATAATCCAATATAGGGGTCT
TTAGAGGGGCAAGACTAATGTTGTGGTTAGCGGTTGATGTCTTCAGTAAAGTAGAGACTG
AGCGCGTGGGATGTTCGGGTTTGCTGGATGATTACTTTGGAGAAATGTTGTTGTGATTTT
AGATAATGGTGGTAGTTTGCATTCAACTTTACTTAAAAAAGCTTCAACGCCTCGTCGCGT
GGTTCTACAATAAGGTTTAGATTTTGCTCAATAGACGTCCCATGTTGTTAGGAGGGTGGT
CGTAAATCTGTTGCATGACATTGAAGCTGATGACTTAAAAGGCACTTGATGGACGCTTGT
GTTATCAATTTTCAAAAATATATATTTAAAAATTTAGGGCTGACCCCTTGTTTCAAAAAT
AATTGTACTCGTGTATATCGACAAACCGCTTACAGCTGACCTATGAACGAATTGCATTTA
ATAAAAATGCCCTTTGTCATTGTGAATTTGACAAGATTTGTGCAAAAAAAATTTGCGGGC
TTTACATACACCTGCACAACACTTGAATGCTACAGTGCACATCAACAACACTCCTTTACT
AAACAAAACCGTTGTGCTGATCTCTCCCTCCTCATTTTGTTTCATTTCCTTCGGAGCCCT
CGTCGGCGACGTGCACTGACGGCTGGGTGCTCCTCGACCCGAGCCCCTTCACCATGGGCT
TCACCTTTTCAGTAAGCTTCATGATGGCCAAGAAGAGCACCCTGTACAATATGACCATCC
CGAACAGGACCGCGAGGTCCACCCACTTGCTGTACCCCATCTCCACCTGCCAGTAGTCCC
TGAGGATCTCATCGCCGGTGATGGTAGTTGCGCCGCCAACCTGGTTGTTTGGGAAGGTGA
GGCCCAGGAACTCATTCTTGTAGAACCCCTGGTTGGCGTACTTGTGGAAGGCGACGTAGT
ACATGGGGTACCTCCACACGGGATTTGGCAGGTCGTGTGGCAGGCGGAAGAAGCCTCCGT
TGAGCATCATGACGCCCTGGATGCCAGCACCGGTGATGATGCCCATGAGGAAGTCTGGGA
CGACGCTGGCCACGATCATCATCAGGCCCTCCACCAGCATCATTGTCACGAAGAGCACCA
GCGCGAAGTAGGCAAAGTGATCGAAGCTCTTCTGCAAGCCCACAAGATAGTAGGCCATCG
CGCCCGGCACCAGGGAGATGAGCAGTAGGTACGGGGTCGATGACACCGTGTTGGCAATGA
CGAACGATGACACACCGTAGTGCCCGTTCAACCTCTCCCTCCCGAATATCTGCATTGTGC
ATATATAAAGCACATTAGATCAATGTATCATGAGTCGTGAGATGAGATCGAGCAACTATT
TATTGTGATCGAACTTGATCCAAAACTACACCTTCATATCCTCGACGAAAGACGGGAATC
CTCCGATGGCCATGAAGGTGAGGAAGGCACCGACGAACATAAGCATGGAGCCACGAGCCT
GCAGAGTTTTCAGTCACACGATGAGTACACCAAGCAGTGATCAACGGTGGTGGTAACGAC
AATGAGGGACTCCTGCTGGTCACCTGAATGGATCCATAGTTCTGGCCGATGTCATAGAAG
ATGGTGCCGCAGCAAAGGCAAAGGGCGATGTAGATGGCAAAGCGGAGCCAGTAGTAGCCG
AGGTCTCTGTACATGTTGATGAAGGACCTCTTGGTCAGCACGAAGGATTGCGTGAGGAAG
CTTGGCTGTTGCCCATCCATTTTCACCACGTCCCCTCCCTGGAACCACACAAACAAACCA
CATACATACACCACACTTAAAATTGCTAAAATTCAACACTCCAACTCAAAGTTTTAGAAT
GTATGTGGAGGCCGGGCTACTCACGATGCCACGTATGTCGACGATCTGCCGTGTGACCTT
GTCCATGTGCACGGAGGATTTGTAGGAGGACGCGAGCGCATCGATATTCTCGGCGGTGGT
CGTCTTCTTCCCGCTGAGGCCTTCCTCAATGTCCTGAGGATTCAATACATAGGGCGCATG
GTAAGGATTAATTGTGGGGCTCTATTCACCAAGAAGATTTCAGATATACTCCCTCCGTTC
CAAAATACAAGACCTTTTAGAGATTTTACTAGGAGACTGCATACGGAGCAAAATGAGTGA
ATTTATACTCTAAAATATNNNNNNNTACATCCATATGTAGTTCATAGTGCAATCTCCAAA
AGGTCTTATATTTAGGAACGGAGGAAGTAGATAATTAAGGTTCATGTTGATTGGACGGTG
GTGATGTACTCACATTGTCGAAGTCTTTGTTGATGGTCCTCAAGAAGTGGTCGGAAGGGT
TCATCAGCGACGGGCAAGGGAAACCGCTCAAAGCGAAGAACTGCAATAAACAATATAAAT
AGGTAACAAATTTCAGTTCTCCAATACTGACTTTAAAAGTGTCTTGGATACTATGACTAA
TGTTGTAGTCCAAGTCCAGCAAGTCAAGAAAATAAGCTTGACAAATGAACACACACTTCA
CATGTTTCGTCAAAGCATTAGTTATACCTATTTACTATCTTCCTTCCTATCTTTCTTCAG
TTGTCTACTAAGGAGCTGTTCGGCGATACTTCAGCTCCATAAAATCTAAGGATCTACGAG
ACATCTTTTTTCCTTGCTCCGCAATTTTTAACTACTGCTCATCATCTCCGGAAATGGGGT
TACTAACAGAGGGCTTCCGAACAGGCCATAAGTATGGACCGACCAAAACAGTTTTTTCTC
CTCCGTGACCGGTACACCGTCAGCTTGGAAAGCACGCGTGTTTGTCAAACCGTGTAGTCA
ATTTAATCACCCCATAAACATACTTTCTTACCTGATAGTATAATAAACCGTGTAGTCAAT
TTCACCGATTAATTTGTTGTGTAGTATCAAGAGACTTGCTTCACACAGTGGTTTACCTAA
TACGGCTACTATACGACCACTCTACGTACAGTCGTCTACAACTAAACCGGACTTTCAGCA
TCAGCTGTCAACACTGAAAATACTGTCCAGCAAGCGCATTTTCGCCACTGTGCCATGAAC
ACGATGCCGCAGGCTGTGCCACGGCCAAAACTAGTTAGGCGGCACTGATCGATCGACGCT
TGCAGCAGCGATCCACGAGAAGCGCTCCGAAGCTAAACCACAATCAAGCATGTGTGATCC
TGTTCCCATTATTGCATGGTGCACTTCTGGTGTGTGCAGTGGTCTCCAGTGACCCCAGTA
CAGTTCCACGGCGACGTAATTATGGACTTCAAGGTGCAACTGTGTATGTGTATAGTGTCA
ATCGGATTTTATGGACTTAAAAAGGACGTTCAATGATTATAAATAAACAGAATGCAAGTT
TGCGTCTCTACAAGAAATTAAAAGATGTGACTTCGCCGACCTGTCTATGCGGGGGCGACT
TGGGTATGATCTAATTAAGAGATCACTGTTTTTTTTTTTGCAAAAATGCAGAATATGTTT
TAGAAAGCTAAAAAACATTTTGACAACATATGACCATGTGTGCATACAACCCAAATAAAT
AGCAGTTCAAGACTCGGCCTACACTTAGAGAAAGAAAAAGAAAACGAAATATGTTGTGAA
CAGTATATATAGCGAAAATTATGCGGCGAAAGCTGAATTTATCCTTTTTTATTTCTCTAA
CTATAGAGTGATTTTTGTTGACTGAAGTATTTTTATTTGCCCATACCCACAGGTAAAACA
TATCACTATTTTTTTTTTGTATAAATTGATCATAGGATTCTCACCTAAAGGTCCAATCCT
ACAGGTCAACTCTTTTGTACCACTGTCGTGTGTGAAACTGTGAATACGCCTACTAGGGTC
CCTACCACGTCCAAATCCAAACACGTGGAACATGACGCGACTCTCGGTCGATAGTTCCGA
TACTGATAGCAACAGCAGCAGGCAACAATCAAGAGTACTGTGCACGTATACGCGCCCACG
TACGCATGTACTCCCTCCGTCTCAAAATAAGTGTCTTAAGCTTAGTACAAATTTGTATTA
GAGCTTATACAAAGTTGAGACAGTTATTNNGGGACGGAGGGAGTACTACATACCACAGTA
CTACGAACTACTCCCTCCGTTCCTANNNNNNNNNCTTTTAAGCGATTTCATTAAAGGTCT
ACATACGAAGCAAAATAATTGAATCTATACTCTAATGTATGTCTANATACATCCGTATGT
AGTTCACTAATGAAATCTCTACAAAGACTTATACTAGTATTTAGGAACGGAGGGAGTACG
ATACAACCCAAGTATTGTAGAGGAGATGTATATACCTGGTTGGTCTCGGCGGCGGGGCCG
AAGAAGACGGTCTTGCCGTAGGCGAGGAGGCAGAGCCCGTGGAAGAGGCCGAAGACCTCG
GTGCTGGGCTGGTGCACGGCGGCGACGACGGTCATGCCCTCCCGGCGCGCGAGCCTGGCG
ATCCGGCTGACGACGTGGAAGGAGGCGGCGCTGTCGAGGCCGCTGGTGGGCTCGTCCAGG
AACAGCAGCGCCGGCCGGGTGAGGATCTCCATGCAGATGCTGACCCGCCGCCGCTGGCCG
CCGCTGATCCCCTTGTGCATCCACCCGCCGATGCGCGTGTCCGCCGCGCCCTCCAGCCCC
ATCTCCCGCAGCGTCTCCTCCGCCCGCTCCCGCTTCGCCGCCGCCGACATGCCGCTCGGC
AGCTGCAGCGACGCCGAGTAGCGCACCGCCTCCCGCACCGTCAGCGTCGTCATTAGCACG
TCGTCCTGCGTCACGTACGCCTGCAACTCGCAAATGATGCGTTGGTTAACTATAAAATAA
TTGATACTGTGTCAACCAGAATGGAAGATGAGATTCTCGGGATTAAAATAGCTCATTCAT
GCATGCACTATTGCTTACCGATGTTCCGTAGGATAGCTTCTGCCTCCGGCCATTGATCAA
GATGTCTCCCTTCTGGCTGACACCAGAGCCTAACCTTCCTGTATTGTTTGTTTGTACCAC
AGAAACTCGTAGGAATTAGAATAAAATATCTTGATACTTTCGTGTGTCTCTACTCTACGC
TAGCCTGTGAAATAAATCTTTCGAGTAGTTTCTCATGAAGGCTGACTAGCGAAGGCCAGC
CCGGACACGATCGATAACCGTATGAGAAAAGATTTTTCACGTGCATGTATACGGCAGTAT
CAATCAAACCTGCTAAAGCGTCTAGAAGGGTGGATTTGCCGCAGCCGGAGGGCCCCATGA
TTGCGAGGACCTCGCCGGGGCGCGCGTAGCCGCTGAGGCCGCGCAGGATGGGTACGCGGC
CGGCCTTGCCGCCGGCCGCCGACACCGACAGGTCCTCCCACGAGAGCACGACGCCCTGGT
CGACCCGACGCAACGACGTCTCGCGGACTACGGTGGGCACGCCTGCGCCGGCGCCGTTCT
CCACGCTGATCTCTAGCGAGGAGGACGTCCGTGACCGCGGCACGGTCACCGGCATCGGCG
CGAACGGTGGCGGCGGGAAGGAGCTCCCGCTGCCGAACGGGAAGCCGTCGGTGCTGCGCA
GTGAGCCGCCGAGGACGTCGGAGGCCGTGTCGGACGGCCCCTCGTCCTCCGCGTCGTGGC
CTGGGCGGCTATGCTGCCGCGGCGGGCTCGGCTTCCACCTCGGCACGGCGGGTAGCAGCT
GCTCTGACGCCATGCGTGGATGCTTGGGTGCCTGGGTGGTGATATGGGTTCCTTCTTCTC
CTAGTGACGTCGCAACGACTCTGCAGAATGGTGGTATGGGCCGAGACTGCTTAAATAGAG
GGGAGATGAGGTGGTCGCGTGCATGATTTACTTAGAATTCCTAATTCAAATCACAACTTG
GTTGAGATTAAGTTTTTTTGAATGCCTTTGTGAACACAGGAGCGGGTCAAGAGGGGAACG
GGGCCGGGTGCCTAGTTCCTTCTGCCTGCATACCATGCGTGTGGCTTTCAACTTCCGTTT
TCTATGACAAGGCGTGCAATTCTTTAGTCTTTATGCAGACAAACAATGTTGTTGTAACAA
GTACGAGACTGACACCATTAGGCAATTCTACGGCTCAGTGGTTCTGCACTTCTGCTGCTG
TTAAAATGCTTAAATTTGCGTGGTTGCATTGCTTGGTAGTACTATGATGTTCTCCGCAGC
AAATTTACTCTGCTTCGTTCGGGTCAGGGTACAAGGTACACTTGAAATGTGCATTTAAAG
AAATTTCGTACCAACAGCAAATTTCATCATAATGGCCGATGCCATAGTTGCTGACGTCCT
CACCCAATAGATGACTCACGCTACTGCACCACGGTACGATTCGTTGAGTTCGCCCCAATC
CTGATAAATTCTTGAAAACGCCACTGGACTCCATATTAATTTTCATTTTCAAGAAACAAC
CATGGATTCCCCTCCCCTTTGCCTACGGCTCCGACGGCTCGTGGCTGGGAGAAGAACATC
GGTGGCTTGGCTCCTACTAGTATTTAAGTTAGGCCTTTTAATTCGTTGCAAGGACGTCCC
TTCATCTTTGAGTTGGTTTTTGAGAGTTAGGTACTCCTTAAATTCGTCCCTTAGGAAGAG
TAGATGGAGTTTTGACGTAGATTCCTGCCACCTTCTTCGAGTGACAAGGTTATGATTTTT
CATCGTGCGTAGGCGCAGGCCCGGCCCTGAGGGGGGCGAGAGGGGCGGCCGCCCC