morexGenes - Barley RNA-seq Database

Contig contig_38970
Source Contig contig_38970
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38970 (6675 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_38970

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54214	3	1492 bp	MLOC_54214.1	Available	Available	LOC_Os11g08200.1, FRAME:+2, EVALUE:2e-92, 13111.m00863 protein eukaryotic aspartyl protease domain containing protein, expressed
CDS Structure of MLOC_54214

Contig Sequence (6675 bp)

>contig_38970 6675 assembly3_WGSMorex_rbca.fasta
GCAACAAACAGGAACTGACACTCGGCACTACATCAATATGTTAGTCCCAAAAATAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGACATGAAACAATAAAAAATTAT
ANNNACGACGGAGACGTATCAGTGATCTATGATGAAATTTTGCAAGATATGAAAACATTT
GTCAAAGTTTCACACATAAAAAAATGGATTTTTTTATTTTTTATGATTTTACTATTCACC
CGAGCTCACGTGAGCTCGGGATTAGAACATCACTTTCGCTTTTCCTTATGCTTCCCTTGT
CTTCCTCCTCCCGCATTCCGCCTCTTTGCATCTTCCGTCACTGCCATACTTCTGTAGCTC
TCACCTTCCCCCTTCCCGTTCCATCTTCATGTCTCTGACTAGATGGCCAAGACCAAGGGG
GTCAAGGAAGCGCCCATGCTCATGGCGCCGCTCAGGCCACCGTCATCGTAGAGCAATGGG
AAGAAGAAGAAGCATTGGACGACCAATGACACCACGAGGAAGTGGTTCCCGTCGGCCCTC
TCTGCCGAAGAGCTCGAGCAACTTGTGGCTGAGAAGTCCATGGCGGCGGATCTGATCCGC
ATACTACTTGGAACTGAGGTCCTTCCATCCCTGACCATGGCGGCAAGGATGTGCTCCACC
AAGAGTACTTCGGTCGGGGCTCGCCTTCTCGCTGCACAACTCTGTGTGCGGTATGCTCTT
CTTCTTTGATTGCCAGTTGCACTATCTTTCATCCGATGAAGTCCTCCACATTACCAACTT
CATCACATTTTGTGAGTGCCTTCTAGGAACAACTCCCAACTTTGAGGTTTTTGCTATTTT
TTGTGTCAGAGTGCAAATGAACGACAACGCCCTCTGTGACCTCGGGGGGGCGCTTCCAGC
CTCGTCGACAGCCTTCCACCCTTCAACAACGAGACCCCAAGGAAGTTGCATTCATGAGCT
CCTCTTGGCCGCATGTCTCCATACACTTGATTGCTAGCCGACGCCATGGCTCGCCTGAAG
ACTTGGGTGGAGTGTCCCATCCTTCCGCTAAGAACATGGGAGACTCCTAAGTGAAGAAAT
CCAAATTCTCACCATCTACATGCATCTTGAATGTCTTCTGGTCAAGAGTGGGTCATTGGG
TGAAAGAGAGAGAGAGGGGGGGGGCTATCATTGAGCTGCGCCTCGGTTGGCCCAATCGTC
GCGCCATCTATGATCAACGTGCACCTTACGTGTATTATCAAACAAGGAATCTATTTGACC
TGATCTATCCAATCCGTCACTAGTTTAATATCGAACAATTACTATTGTCCCTAAATAATC
TAAGACATCTCTAGATTGTACGGTTCTCTTACGAATTTTGGACAATTCCATTCATTAATA
TTCTTTACTACACAAGACATTATAGTATTTAGTAGCATATTGGTAGAATAAATATTATTT
ACTAGCACAAAATCTGGTTGCCAATTTGGAAAAACATGCAAGTGGTCTATAATAAAAGTG
TAACACTCCAAACAAAACAGAAAAAATGTACAAGTATAACTTCAAAAATCAAATGTAAGA
GTAGAGATCAAATGAACCAGTTGCACATTACAAGTACATGGTTGCCACATCTTCAAAATG
TGCAACTGATGTACGTATATTAGAAGTGCCACAAACCAAGCAGAGTTTTTTTTTAAAATT
TCTGATAAATGGCGCTTTTATTAACTCAAAATGTAGCATCAAGTGGATAGAATCAACGTG
ATCTCAAAAACAAAAAAAGAATCAACTAAATAGAGTTGCACATTACAAGTACAATATTTA
CTGTATTACACACTTCAGAAAATGTGCAACTGGTGTAGACTAAAAGTGCAGCTGCAAATA
AAAAGACATAAGGGACAAAAGATTACAATTCCCGAAAGTAATCGTTGCAACCTGAATATA
GCAGAAAAAATAGAAGAAAAGGCATATGCATGATCAAAAGGTCCAACCAGGACCTCCAGT
AGTTCTAAAGTGTGAACTGATCCAAGCTATAGCAGCGTACATGCACGCTCAGGGGTTCAG
GCCCAGCTGTGCTCTGTCTGTAGTGTGTTATATTCTTTCCGAAAAATAAGTTTGCTTCTT
AGTAGGAGGACCATGCATACAGTCAATCTAATATCATACCAGGATTGCACACATTCCTCG
GTATGATCAACATTTTATTCGTTATAAGCGGGAACATCATACAGCGTTTCAAACACCATA
TATACGAGAGCACTCATTTGTTCTCGTTAAGGCTCTTGGCTATGTCGGCCGGAACATTAT
TCAGAGACGCGAATCGATGACGGATTCAAGCTCCTGCACCCTGTCGCACTGCGCACGGAC
CCATCCGAGCTGCTTTTTCTCGTTGTCGTATATCACAAACAGATCCTGCATCGTCACAGC
TGCAGAACAGAGGATCAAAACAGAAATCTATTGAAGAAACCAGGCAAGGTTTATACTAGT
TTCATCTGCATCTGAATCGTACCTCCGATCAAGATGAAGTTGAGTTCCTTGAGAACAGGA
TCCAACGAGGCATCGAGGATAGCCAGGCACGTTTCCCCGTCTTCCTGCCATGCCAACAAA
CGTACACGAGACATGTTAGCCATCAAATTAATTGTGCAGCGATGCTTATCGGTTGGGTCG
TCGAATGCTCGCCTTCACGAAGAGGTAGTTTTGAGGAGGGATGTCGAGGTTGTTGGTGCC
GCGGGCGTGGGTAATTTTTAGTGACAGTGCCTTGAATTGGTTCTTCACATCATTGACAGA
TCCGAATGGCTTCTTCCCTTTCCAGCATAGAGGCAGAGCACGACCCTTCACCTCTTCAAG
TGACGATTCGCTGAGAGTGCCTCTAACCTGAAACACTCAAATGACATGAGTACCATTTTG
TTTATTTATTATCTCTGTTCAAAATTATACGTGTATTATGGCATCAGAAATTCAGAACGC
ACCGTGGTGCTCTTGAAATTTATTTACGTACCTTTGAAACAATCTCGTTGTATATCTGGG
CAGGTACGTGGGTGTAGGTGGAACCGCTGTCAAACACAGCCTCGAATGTTGGATTCCCTC
TTATCGGCTGCTTGTCAATGAACACCTCTGCTAGGCCAGGTGAGTAGTAAAACCTGGGGA
GAAACGATGCTATAATAAATGTTTGGAACCAAATGAAAAGAAGAAAACAAGCAATAATGA
TACCCTTCTCTAACTGTGCATGTTAGAACCAAAAAAAAACTGAGAGCGAAAGCCATGATC
ACAAAGCAATTCTTACAAGGATTCTCTCATGGGTGCCCAGGTTACGCCGCGGGTGGGCGG
ATTGAAGTCCCCGACGTAGAGGACGCCCTTTCCTTTGCTGCTGAGGCAATGCCCAATGAC
GTTCTCTTTTATCATCTTATGCCCTTTGAGTTGCGCGGCGAAGCCTGCCTTTCCCATCCC
GAGTCCAAGGATGCCATCTACCGGCGAGGGCGGTGAGTCTGCTGGCTCCTCCTGCTTGTA
CCCACATCTGTGCAAAATGGAAGTGACCGTGCATGCATCATCAACATCCAAATACAGTCA
GGCACTCAACATGTAACACTAGTATAGTACTCCCTCCGTTCCTAANNNNNNNTCTTTTAA
GCGATTTCACTAAGGGATTACATACAGAGCAAAATGNNNNNNNNNNNNNNNNNNNNNNNN
NCTATATACATCCGTACGTAGTCCTCTAGTGCAATCTCTAAAAAGACTTATATTATGGAA
CGGAGGGAGTAGTATATTTCAGTTAGCGCCGTACCCGAAAGCGATTCTTTTCTTGTCTCT
CCCATTGACAGAAATGATGTCGGTGGCGAGGTCACCTTCTGACTTCCCGGTGACATACTG
AATCTCGTAGTGGCACCGATGTGGATCATTCCTGGAGCACTCAGGGATCCCAGGCACGTC
TCTGCGCACTGCAACACATAGCGGGCTGCCACATACCACCTTCAAGTTGCCGTCTGCTGG
CGTGTAGTATGGGTGTGGTGGCCTCTGTGGTAAAATTAAACGAAGCATATATCAAAAGCA
AAGAGCGATCATACCAAACATTTTTCAGAACCATCTTGGAATGAACATGTGGCATCAAAC
ACAAAGTATTGCAAATTGAACGGCAATATGTGGTATTGCAGAACCGAGTGTTGTTAGTTG
TTTTTACCGGGTGGCAGCCCTTGCAGCCGTGGACCGGGTGGTGGCACTCCAGCCAGGTGA
GGTTGCTGCCAGTGTCGACGTCCAGGAAGTAGGGCTTCGCGGGTTCACCAATGTTCAACG
TAGCATAGAAGTGGCTGCAGAGATACAGAAAAGGCGCGTCAAATATACAGAGAAAAACCT
CAAAGCCTGAGAAGGCCATGAAGAGTTCAGAGAAACATACCCAACAGGGTACACATTGCC
TTCGAGCGGGAACTTGATGGCGGAGGAGGGCCCGAGTGGGAGCAGGAGCAGGAGGAGACC
GATGATCGGTGACCACATGGCAGCCATGGTGGGGGAAGAAGGAAGACCTCTGGTTTGCAC
TCTGCTGGGGTCTCACTTCTCTGCTGAAACTCTGTGTTTCTTTCGGTGGTGCCAAGGGGG
TATTTATAGCCGCTGGCTTCGGAGCTTCATTTCCTCTGATGCTTTCTTTTCATTATGCAT
TTTCTGTGAGTTTTAATATTGAAGTGATGCATAATTCCACTCGAGTTCCCTGGATGCTAA
GTCCTTGTTTGGAGCAAATGATTTTTGTCCCCAATTTCCACCAGGAATGAAAGAAATTTC
TGCTGACTAGATGCAAATTTCACGTGTTCTGAATCAGACCTGGTGAGATTAAGGCAGAAA
AGAAGATTTAGACACCACAAAATATTATTTGGATTTACGTAACTGTATGCTGTGCGCGAC
ATTCAGATATTAGTGATAGATAATACCTATTCTTAGGAAAATAAATATAATGGCATTCCA
AATTAATGATACATGCCTAGCAAAATAACAAGGCATCATATTTTTGCAGCTCAATTTTGA
CTTTGGAAATTCGAAAGTCAATTTATTCTGTTCTGCTTGGCTGTACATGATACACGTATA
TGCAACGTCTTCCAGATATGTGTATGCTATATTTTATTTACTGCAGAAACTCTCTAATTG
TGTGCGCATATGTAGTGTAGGTTCATTTCCAGTGACTTAACTGCAAAACTTGTATAACAA
TGTTTTCCCAGAATGTTAAGAGTAGAAAGGTTCCCATTTCTGCCTTGGTCATTCTTCAAG
CACACGTTTCACGGTTGTGTCCACCCCACGACGAAAGAGATATGCATATTACTAGCCAAA
TATGTACTGATGACTCATCTTGGAAACCACAAAAATAGACAGAGGCAGTTTCAATCTCCA
CTCCATCAAGCAACCATTATTACGAAAATTGGAAGCAAGCATCATACTATGAAAAGGGAA
AATATGATGCATGAACTGACAACAAATACTGTTGCTACTCATGCCTATCAAAGCTAATGC
TCATCATGTCCCAAGTGTAACTGCTCAGCTGTGATCTGAAAATTTTGTACGCGGTGCGTT
GCAGACACGCAAGCATTTTGTCTTCATATAACATTACAAAAGGGCTCTTACTATATATAA
AGCATCAGTCAGTACTTAGGAATCAGAATTTTTTTCAAGTTTCTCAAATTTTAGAAGTAA
CCCATATTTAAAACAATGCAATTTCGGTGTACTACTCACCCTCGAAACTAGATTTATCGT
GCCTACGCGAACGCATCTGATCAAGAAAATATACGGTTACATAAGGCCTACTCACAGTGT
TACCTATCCGATCCAGTGGAGCATTCAGTTTTGAGAATGAAGCATAACAATCTTTCAGAA
AAAAAAGCACATCATGTATTGAAAATTTTAGAGCTTCGAGTGGACGGGATGCCAGAGCAA
GGACCCTATCTTATTATGAACAAGAAGATCATAAAGGTTAGTGACTTACTATTTGTCTCT
ACTACATTCCTCCTTATCAAAAAAAAAAAATTTGTCTCTACTACATGATCATCCTTATCT
CCATTCATCCCTCATTTTGGCCAGGCAAGTTAAGACAGTACAGACTTTATTTGGATGGCA
ACAGAAGCATTCAATTAGATCATAACAACTGGTTTTATTTGTAGTATCGATCTCATTGCA
AAACAAAATGTAGTAATCACACCTCGGATAATTCATTATGTTTAGAAAGATTCCCACTTT
TCTGAAGAAAAAAATCTCTCTTTTTTTCCAATTAGGTTCACACAGACAAGTAGACCAAAA
TAAATTGATACACATATATGCAATGTAATGTAATGCATCTTCCAGATATGTGTAAGCATA
TGTAGCATGCATGAAGAGTAATGAGAACAGCGGCTCATTTCCAGTGAGATAACCGCAAAA
CTTATAATAATGTTTTCCCAGAATGTTAAGAGTAGAAAGGTTTCCATTTATTTATTGGTT
TCTTCAAGCACAGCCGTGTTCACAGCGAAAGGATATGCACGTAACATAATTCTACTTGCC
AGAGCATTACGCCTCGCTCCAGGACTGGTGGCTTCGGGCGAGGGATGCCACGCCACACAC
GCTTCGCAAGGCGCTGATCCCTGTAGCGCTCTTGATGCCTTGGATGATATGGAAGCATAG
AAACGCGTGTGTTTTTTATCATATAACCCCATCGCTTGATGAGCTTGTCGACAGGATCAA
GGATGAGTCCAGATG