morexGenes - Barley RNA-seq Database

Contig contig_38962
Source Contig contig_38962
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38962 (7807 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_38962

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54205	3	2650 bp	MLOC_54205.1	Available	Available	LOC_Os11g18730.1, FRAME:-3, EVALUE:0.0, 13111.m01888 protein glycosyl hydrolase family 3 protein, putative, expressed
CDS Structure of MLOC_54205

Contig Sequence (7807 bp)

>contig_38962 7807 assembly3_WGSMorex_rbca.fasta
TCGCATGCGACGTTCCCCAACAGGATGAATCGGAGGAAGACGAGGATGAAGACGAGGATT
GATTGTTGTGCCTTTCGTTTGTGTCATGAACTTGTTTGCATTTTGCACTTCGTTGAATGA
TGTTGTGGGTATGAATTTGAACTTCTAGGCATGAACTGGCACGAACTTGGTTGAATGATG
TTTGTGTGATTCAAATTTATATGCCATGTGTTTTGTGTTGAGGAAGTGTGTGAAATTTGT
GTTCAAATTGTAAGAAATGTGAGGCGCCGGCTCGCGCGCGCTTCATTTTAGCGCGCTGCT
GGAGCTGCGCGCCCGCGCTGCATTTCGGCGCGGCTGCTGGAGCCAGCGCTGCGCGCCGCG
CTAAACCTGACGATGGACGCGTTGTATATAAGTTTTTTGAGCGCCGGGCGAAGCGCACCT
GTTAGAGATGCTTTTAACAAAGTCACATCTAACTCTTGTGCCATTTGATTTTACGCAAAG
ATTTGTGCGCTGGCTTTTTTCTCTTTTTCTTTTTCTCCTTTTGATGTTATTTAGATGAGG
AACTAGATGAGAGCTAGACATACTCTGTTACCTCTATTTTGAATTTTCGACACATGTCTG
AATTAGTATATATATATATATATATATCTGCAGTATTAAAACATGTCTCGTTGTTTCCCT
TAACCTTTGCTTAATGGATGCCTCAATGCTAATTCTGAGGCAACTGAACTTATAACTTAA
ACCAATAACTAAATTGTGTGTAACTAGTGATAAAATAACGTCACTGCACTTGGGTCTTTT
ACCCGTGCCAGAACCAGAATAGAGCTCCGGGTTCAGGCCTCGAAGCTGATCTCGTGCTCG
TCTTTTCCGACCTTGAGGAAATGTGAGCCTGCATCGATCACCTTCTTGCCATCCTCCCTC
GCCCTGCTAAAGTGCTCGCATGGCCTGACGTCGAACGTGAGGCTGGCCTTCTCGCCGGCC
TTGAGATGCTGGGTTCGGAACCCAATCAGCTGGCTCACCGGACGCCCGCCCGTCGCGTTG
GGCCACCGGAGGAACATCAGCACAGAGTGCTTCCCGTCCAGGGGACCGTGGTTCTGCACC
TCGACCACCGCCGGGAACTTGAGCTGCTCGCACCCGTCGGCGCCGATCTCCTCGACGGCG
TAGCTCGCGCCGCCGTCGGCACTTGGCGTCGCGGTCAGGCCGGCGAGCAGATTCGTGCGT
GGTGCTTTGTTGCCGGTCCCGGAGACAGCTAGTTGGCGGGAGAACTTGGAGTAACTGAGG
CCGTAGCCGAACTTGTACACGGCGTTGCCCTGGTAGAAGCGGTAGCTCCGGCCAGGGTAT
CCGGTGGCCGGGTCGGCGCGCATGCGCATGTCCGTCATGGGCACCTTGGTGAACTCCTCC
GGGTACCACGTCACCGGCAGCCTGCCGCTGGGGTTGTGGTCTCCGAACAGGACCCTGGCG
ATGGCGAGCCCGCCGGCCTGGCCAGGGTAGCCGGCCCACAGAATTGCACCGATCTTGGGG
TTAGATTTGGCAAATGTCACGTCAACCGGACCGCCGGTGAGGAGCACCAGGATCACCGGC
CGTTTCGCCGCGTTGGCGACTGCGGCGATGAGGCTCTGCTGCTTCCCTGGCAGCAGAAGA
CTCGTCCTGTCGAGCCCTTCCTGCTCCTGCGCCTGGCTGAGGCCCATGAACAGGAGCACG
TAGTCCGACGAGGCCGCGAGCCCCGCCGCCTGGCCCGTCGCGGCGAAGCCGCACGCCGCC
GAGTCGCACCCGGCGAGGAACCTGACGTTCTGCACGTAGCCCTGGAGCCCCTGCAGCGGC
GTCGTGGTCTCGCAGGGAGGGCCGAAATAGTTGCCGTTGAGCGCGCCGGGGTCATTGGCG
TTGTGGCCGATGACGGCGGCGGACGCCACCGCGCCCCGGCGAAGCGGGAGGATGCCGGCG
TCGTTCTTGAGCAGGACGATGCCGTCCGTGGCCGCCTGGAGCGCCAGGTTCTTGTGCGCG
GGCGAGCACACGTCCTTGGCCCCAAGGCCCCCGTACAGCGCGCTGCCCCGGGGGTCACCG
TCGAAGTGCCCGAGCCGCATCCGGACGGCGAAGAGGTTATGCAGGGCCCTGTCCACGTCC
TGCTCCGTCATCCTTCCCTGCCGCACGGCGGCCATGCCGTGCACCTGCGTGTAGTTCCCG
CAGTTCAAATCCAATCCTGCAAACAGTTGGCAACATTTCTACATCAAGATTCTCCTCGCA
ACATCAACTGCAACAAATGACCTTTCTCATGGCGGTTTTGCTGCACTAACCGGCCTTGAG
GGCAACGGCGACCGTCTCCTCCGGCGAGGGCCGGTAGAACTGCGCGTCGTGCATGAGCGC
CACCGCGTCACAGTCGGAAGAGACGTAGCCGTTCAACCCCCAATCCCCCTTGAAGGTCGT
GGAGAGGAGGTCGTTGCTGGCGCAGGCGGGGACGCCATTGATGGTGGTGTAGGCGCACAT
GACGCAGCTGGCCCGGCCTTCCTCCACGCAGCTCTTGAAGGGCGGGTTGAAGGTGTCCGC
CATGTCCTGCGCCGTCACCCTCGCGTTGAAGTTGTAGCGGATGGCGCCGTTCCAGGCCTC
CAGGTCGTAGGCCGAGGCGTGCTTGCAGCACGCCGAGGTCTGCAGCGTCGTCGGCGAGGA
GCCCTGCAGGCCGCGCACGAACGCCACGGCGTACTTGCTCGCCGTCGTGGGGTCCTCGCC
GGGGGTCTCCTGGCCGCGGCCCCACCGCGGGTCGCGGAAGATGTTCACGTTGGGCGACCA
GATGGTCAGCCCCTCCGCCTGCCCCAGGTTGTACAGCGCCCGAGCCTCCGTCCCGATCGC
CTGCACCACCATTTTCAATTTAGCCATCCATCCCGTTAGTCCGCTAAATAATCACAAGTA
GTAAAAAGATTTTACTCAATTTGCATTGGACTCCAGATTTACAGGACATATGCATGCTTC
CGCTAGACACGCGCGTTCGGTGCCCAGGTAGTAAGTGGGATCACTTTTGCAGGAGTACAA
AAGTACCAACCCAATTGAAAGGAGGTGTGCTAATCAATCGACGAGATCAGAAAGATCATG
GAGGGAGGCCACGCAGTGACAAGTGACAAAGACGGGCACGTGTGGCATGAATGAATGAGA
GGGGTGTGCAGTTACGGACCATCACTCCGTAACCAGGACAATGCATGATTGTGTCTAAAA
TGCGAATTGCTCACGCTTTATCCTCTTTTTTTTTCAGTACAGCGTATCCCGGGCAAAGTC
AAAAGCGTTTCTAAAAAAGGCCATCATTCAGCACCGCTGTGGAGCCTTGCAGATTACGTT
CCATGGTCTCTAGGCTCTGTCATGCAAAGGGAAAACTTGGTGCAGTTCTCTTCATTGCTT
ACTTGCTAGTTTTGCATCTGCACCACAATTTCGATCTCTTTTTTTTTGAGATGTTTGATC
TTTTTTTTACCATATCACAAACGTATCACGGCCCATTTAGTTCTTATAAAACCTTACAAA
ACATGTACTAATAAACAACATTTGGTCGACCAAACAATTCTAGATCTAACCGCGCAATCG
ACAAGGCAGATTAAGTAGCAGCTGACATTATCAGCACTAATTAATATTGGAGCCGGCCGG
CCCAAACCAGCAACCACCAAGGACGGTGTACAAGATATGGTGGTGGGTACACCCTAGCCA
GTGTGCCAGCACAGGAACAAGCATAGGTTGTTGGTTACGCGCGAACAAAAGGCTAGCTGG
CTGGACGTGTAGGCCTACATGCACGTTTGCTCGCTCGTTTACCTATCAATCGATAGGTAG
CGATCCCAATGAAGCAAATTGCCGCGCACACCTGCTGTTCACCGACCTTTTTTCCTGTAG
TGCAATCATGTTACTTTCATCTGCATGCACTTTCGGTTCACCGGAAATTTGAGTTGTCCA
TTCCTGTCCTCTTAGCACGGAAGCATAGCTAGTATGGCTTAATGGAGCCTTAAGTAGCTA
ACCAAGTACGTGCTTTGCAAAATCAAATATAATCACAAGCATAAGACTGCATGCATATTA
TATTCCTATCTTTCTTGTATGTTTTAGACTGAATTTCAGGTTTTACTTGTACCGCATTTC
TGCAACGCTTGTTACCTTGTCTAACAGCTTTTCATATTACCGAATTTCGCGAAATTTTTA
TATTTTGTTTATTTATTTTTTATAGCGATCTATGAAGTGGGTTTGGGCCGCCAAGTACAT
GTGGCGCATTTCCCTACTGTTTTCTTTTGCCCATGAAACCGATGAAATTGCTTAGCAAGA
CCTGGTCTTTTTCCTCAAGGTGCATGCGCCGCCGAGTTAGCTAACCAAACGAGGAGCTGC
GCCTCTCTCCATGTCATGGTCACCAGATCAGCATCAGAGTGTTCTTCATCGAGAGTAGGC
TAGCTATGGATTGGGCGTACGCGCAGGACCACGCCGCCAAATTCCCCTTAGTTGGACGCC
GGAGAGGGTCCAAAATGCTGGATTCGACCGGAGCCTGTCCCACACTCCATCCTACCTCTA
CCTACTCCCACCCAGACCGACCAGTAACTACGCTTTCCATGGCTGATCTTTATGTTGAGC
CGATGGAGGAGGTGCATGCAGCATACCTGGCCGATGAGGTACCACAGCTGCTCGTCGAAG
GCGGCGGCGGTGAGCAGCACCTGCGGGAAGCTGGTGATGGCGCGGACGGCGCCGTCGAAG
TGCATGCCGTGGCCCCAGAAGGCGAGCCCGTGGAGCCCCTCCGACCACCACTTATACGGC
GGCACGCCCAGCCGCGGCACCCCCGGCGCCTCGTCGCCCAGCTGCGACACCTTCTCCGCC
AGCGACAGCCGCGCCACCAGGTCCGCCGCCCGCTGCGCCGGCGGCAGCGCCGTGTTGCAG
AACGCGAGGCCCTGCTGCGCCGCCCCCGGGCCGCACGAGAACGGCGGGTTGCCGGCGGCG
CACACTCGCACCAATGCCAGCACCGTCGCCAGCGTGATGAGGGCGACCATGTCGGCGGCG
CGGTAGGGGAAGCCCGCCATTGAGAGTGCGTGTGTGTGTGTGTGTGTGTGGAGGGTGAGA
GAAGCTGAGTGGCGCGGCTCTCCTTTTATAGGCGTTCTTGGCTGGTGATCTGGTTGAAAC
TTGAAACTAGAAAGCTGGCATTAACCTGCTTTTTCAGCGTTCGCTTGAAAGCGAGCTGGG
CTCCATTCGGAGTCGGACGACACACCGGAAGGTAATAAGATTCGGCGTAAGAACGGACCA
CGAGCCCACGAGAGAGCTGTACAGCACATTACGTACGTGTACTTTCCGTTGCACTGCCGT
TCAATGTGCATGGGTTCGACCGTGCAGCTCTCATCACGAGATTCTTGACGATGAATGCAT
CATTTGGGTCATGACCATCAGTGAATAAAGCCCCTGGTCGACATGCCCTAGTACTCCAGT
AAACAACTTTGGGGATCAAGAGGGCGTACGGTTGACATGCACCTAGCCACCTAGCTAGGT
TTAATTCTTTCTAAGCCATGCATGCATGCATGAGGCGCCGTTAGCCTACTGGCTACTGCA
CTTCATTTTTCATGCAACACGACAGCAGCATTGGCGGTGCTGTATCATATAGGAGTATAT
CCTTCGTGCTTTGCTGGTAGCCTCCCGTGCCATTAAATCCACCCTAACTACCCTTGGGCA
AGAAAAACGATGCCATCGATCGGGTTTGATCGGTCGCACTGGCATGCACACAACAAAGGA
AATCGGTGCCATCGATTTTGAGCGGTAGCATGCAGACAAGTGAAGAGATGCCATCACTTT
TATCGTTATCGTTTTTCCAAGTGGAAGAAAGACTTGTAGGATATTGTGCCACGTTAGGAG
CCGAGCTGGTTATACAGGTGGAACGAGGTCACACACCACGTGTTGTGCTTATCTGTTTGC
TTTTTTTTTTCTTTCAAGAATACGCGTAGGCGTATCATAGCTTTATAGAATGCTGAATTA
TAAGTAAAAGAAGACTAGCACTCATTGCGAATAACGAACGTAACACAAACATCACACACA
TACAAGTCGAGGGACAGCCACCAACGACCATACGACACTACAAAGCACAAGCGTCTGCCC
TAACAGATAATAACACCGCGTCTATACCCACGCCGGGCATCCCTAAAGACCAGCGGCTCC
CATAGAACTTCGCTAGTTGACGCACCATTTGCCCTGAATGCCGAAGAGGAGGTGCTAGGT
AAATGACAGGACTTGCTCCAAATTGTGAAGACACCGTCTTGAATGCACCAACACCGAAGG
AGAGCGGCGAGGAACAAGGCTGTGACTCTAAACACGATGCTCCCAATAGAGGAGCGACGT
TGGGAACGCCGCCATCGTGTCGATCCGACTGGATCAAGGCTTTTGCCCCGAAGATAACAA
CCAACTCCACACAAGCGAGGGAAATGTCGAATTCACCTCGAGGACACCTCCAAGGAGGGA
GACGACACCCACGGGCGCCATCGCCGCCGGCCGGGGAAGAGCCTTGCAAGATTTTCATCC
AATCATCGCACATCTCCACACCTTGAAGGAATTGGGCAGCACCGTCTAGGACGCTTCACA
TTGCCGCCACCGCAACGCCTCGCCATTGTAGATGCATGGCCAAGGACCGCCGACAGGCCG
CACATGAAGGAAAATTGTCGTCCACCAAACAACTACAACCTGGCCGAGGAACCATAGCCA
CCCAACTCCTTTAGCAAGGGCAGAACCGCCACCGAAGGCTATCAACTGCTCCAAAGTGAC
AGCCTTTCGACGATCCAACACCTAGCCGCAGGCAACTCCCACACCGACACCATCAGGAGG
CCACCGCCGCTCGCCACACAGCCCAAAGGTGGCCCGGGCGCTCGCTGCTCGCCAGGAGCA
CCATCCTAGCCGAGACATTGCAACACCGCCACCAACCAGGACGGTAGTGCGTGCCGCCGC
CTGCAGTACGCACCGCCGCCACTAGACCACGTCACAACACCGCTGTTGTCCCCTCCAATA
CCGTCATATCTCCATGTCTCCCGCTGTGCTCTGCCGCTGGCCACCACCACACCAAGCCCC
CAACGTAATCGCCAGCACTACCGCAGTGCTCAACAGTCCTAGAGGCCCGGCGTCACCACG
CGTGCTGGCAGCCACGCCCGGGTATCGAGCGGCCAGATCCAGATCCTGGGAGGGGGATCG
AGATGAACCGAGACCATCATCCGTTACCGAAACAAGCAGCACCTTCGGACGGAGCTCACA
ACAACCCCGCAGCAATCGCGCCATGCCGACGCCGCACTCTCGCAGCACCACGCCGCCAAG
CGTCGTCGCCGCATGAGCACCGCGCCATGGCTATGGAGCAGGGAGCCGTGCCGAGGAGAG
GCCCCGCCGCCGTCGGTCCTACAAAGGCCCTCGGCGGCAGCGAGGGGGCGGGAGGGAGAG
GGTCGGCCGCCGGCGGGGATCTAGGGTCCCCCGTTTCGCCTCGAGGAGGGACGCGAGGGT
CGGGGTCTGTGTTTGGGGAGCTAGTCTAAATGTTGTCTTCCAAGTACTGCTTATCTCTTT
GTAGTTGTGTTTACATGGAATGAGATATTGGTCTGCTGGTGTTCTCGTTGGTGATGGTGT
CCGCAATTTGGGCGATTGGCTTCGGGTCCCCCGATGCCGGGTCAATAGCTCCTATGCGAC
ATCTTTGAGGTGAATTCGAAGGAGTGGGACGTCTTTCGTCCGAATTACCTTGGCGTGACA
CTTCTGAGCGAGGAAATATCCCACACACGACATGGCCCTTAATCTGAACTGATGTCCTGA
TTAGCTGTTAGGGACTAGACCCACAACTTATCCACATAAGCGCGGGCCCTACTTGGCAGT
GCATCTA