Map Locations of contig_38954 (10097 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38954

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54194 2 2557 bp MLOC_54194.2 Available Available LOC_Os04g44110.1, FRAME:-3, EVALUE:0.0, 13104.m04390 protein hydrolase, putative, expressed





CDS Structure of MLOC_54194






Contig Sequence (10097 bp)

>contig_38954 10097 assembly3_WGSMorex_rbca.fasta
CACAAATGCAAACAGGTTATATTAAGAGCAATATTACAAAGCATATTTCTCCTAAATTAT
TTTATCCCCATGATCTNNNAGAGAAGGGGGAGATAAGTATTTTGCAAACGAAGTCATGCG
ATAATCTCACTGATCTTTTTACTAAGTCCTTACCAAGTTCTTTGTTCCATAAGTATGTAA
ATGGAATTGGTATGAGACGACTTCGAGACTTGCAAAATTCAGGGAGAGAAATCTCCTAGG
ACCTGTTAAGATCATGAGATCTTTTGTATTGCACTCTTTTCCTTTGTGAGTTTTTTCAGA
TGGTTCTTACGTAAGGTTTTTAATGAAGCAATATCGATACAAGTATGGACGATATATGCC
ATTTTCTCCTAATTTTCCCCCTGGGTTTTAGAAGGAGTTTTTCATGGCATATTGTATGTT
TTCTTCTCAATTTTTTCCATAGGATTTTAAAGGAGAATATTTCAAAGATGATCTATCTCA
AGGACAAGCGAGGATTAGGGAGAGTGTTAGGATTTAATTAATCCTATTATTTAGGAATAA
TCCTCCCTTGTAATTAACGTGCGGTTTTGCCCTCGCAACCGTTCGAAGCGCTCCCACGCC
TCCATGATGGGATGCGTCCCTTCGTGGCGTTGGCAACGGTTCACCTGTATATAATCCTCA
TGTATCATCAACGAAAGTGACAGATCAATTAAATCATTCTAAACACTTATGATCTCAACT
ACTTGACCAAATACCTGAAAAGATCAATTTAGGCCAACCGTTGGCAAACCAGTCTGGTGC
GCCTGCATTACTTTCGAACCAGTAGGGAGTTGAACTAACTGACGACATTGAGTCACAGTG
TGTGTCACTACGTCAATACCACCTTCTCATCAAACTGGCCTGACCATCACCAACTCCAAA
CAGAACAGAAGTCGCTTTGCTTAATCTGGCCAACCACCAACCTAATCACACTGGCCTGAT
TCTGCTATCCAGCATAAATATGCATGCATGATTCGTGTTGTCTGCACCAAGCAAGCTGAG
AACCAATCCTGCACCCAGTTACCCAGAATTCTGAGTACACAGCTTCCTGAAATGGCGGTC
AGCACCTGTAGCCTCTTGGCCGTTGCCATGGCCCTCGCTCTCCTAAGCGGCAACATGGCC
CACGCCAGCCGCCTCCTGGCGGACACCACTGAGGCAGCATCCCCCACTGCAACGCCTGCC
GCCGTCCCAGGCATCGCCGCACCCAAGCCGCCGGTGCCCACCATGCCTACAATGCCACCG
GTGCCAACCGTGCCCACGGTCACCACGCCGCAGGTCACGGTGCCGCCGATGCCTGCCGTG
CCGGCGATCACCGTCCCGCAGCTCACCATCCCCCCCATGCCGACCGTGCCCGCGATCACC
GTGCCCCAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCACGGTCACGATGCCGCCCATG
CCCGCCGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCATCTCC
ATCCCCAAGATGACATTGCCTCCGATGCCTTCCATTCCTACCGTGAACGTGCCAATGCCG
TTCCTCGCGCCACCTCCTTCGGCATAGGCCCGGAGCAGAGCACCGGAGCGGAATTCTACA
TCGATCGTCCAGTGATTTTGGCTTTGCTTACTTGATTCATCATTGGTTCGGTGGTGAATC
TTGGTCATGACGGGTGTCATTCACCGTTCGCCACCTTGTTTACATCATACGGTTCCTATC
TGTGTGTGTGTTTGTGTAGTACGTACGTAGCATTAGGCTTGTCAATGGCCGTCTCTTTTT
CTTTCTCTTTGTATTGAGTGTTTACACTGGACATGTATGTCATTTTTATTACATTTATGT
CAGACGTATACTGATATGCAGTTTGTGAGCGTTAGCTCGTCATGTGCAGTCTAAGGGCCT
GATCGGCGTCGCTCTACTCCGCGACTCTGCTCCTGGACCTGGCGGAGCTGAAGTTAAAAA
CCACGGAGTGGGAAAACAGGTGCTCAGCAGATCCTCGCTTTTCGTGGAGCTGGTGGGTTG
CCGAACAGCTCCTAACTCCAACAAATCTGATTTCTGACAAATATACATTTGAGCCTTAAA
CAACTGAACACAATCATACAACTAGACTTGAAACATCTTTGACATACATAATATACATTC
AAATCCTCCATCCAAAGAGCATTACAGCGAATGCAGGCTTCCAACTTCATTTTGAATGGA
ACGCCCAGAAAGATACATTTCTGCGGTGGCAGTATGCAATGCAGCCCCAATTGGAAGGAC
ATCCTCGTCGACGAAGAAATGCGGATTGTGAACGGAGTGGACCGAGCCGACTTTCTCATT
TCTAATACCGATACCAAACAGAACGCCAGGAACTAACTGTTGGTAGAATGCAAAGTCTTC
CCCTGCCATGATCTTCTGTCCGGGCTTCACCTTGTCTGGACCAAGCACACTTCTGCCCAC
ATTCTCTACATGCTGGTGCAGTCTCTCATCATTGACGACGGCGGGATACATTGGGTGTGA
GGGAGCTCCCAGTATCTCCGCAACTCCCATGCATCTATGTACAGCTGCCTGCCCTTCTAC
TACCTGGAAGAAGCAAGAGTATTTATTCAGGAATCAGGATGCTACAATCTGCATTACGTC
CATGGTAAACCTGTTTAATAGTGCTAATTCCATCGTGTTCGCCCGTTCACAAACAAAAGA
AACATGAAGCGATGACCATGGGAACACGACGAATAGACGGCATAGATGTGTTACTATGCA
AGTCGCGTTGTTGAAAACTAAAAGCATGTCCAAGTCCGACTCTTCTGAGAATGCACACAA
GGTGCTGTCAGTGATATGAAGCTCTTTGCTCACAGGAAAATAAACTCTGAAGGTACCGGC
CATTGCAGCACGGATATTACGATCAAATCAAATTGTGACATAATGCTAACCTCCTTAAGC
CTTTTCTGTAGCCGATAAAGTCCTTCAGTAGTGAGGCTCCTCAAAGTGCCTCCGAATTTG
ACAACTGGAGGTGTGGAATCAATAGATTTCCCACCTTCAATATAGGTTACAGAGAGAACC
TGAAGAAAACAACTAGACAGATTAACGCGAGCATGTTAATGTTATGGACTGTATGACAGA
GCAAAATTCCGGTCCCGAGCATGTGCTGTTGCCTAAGGTAGGTTAGTTGAATGTATACAG
ATATACTAACGACTCAGAAGACATCCAATGTTCTGTAGAATACTTGACTGATGCTACAAA
ATATGCATCAAAATGAGTATCACATCCTTAACCAAGCTGATGATTATCTCATAGGAAATC
ACCACTAGAGTAGCATTTCAGGTGCCACTTTTTTTTTGAAAGAAATTCAGGTGTCACTTC
AATATGTGTAATATCCTCAAAGTTATGAGATAACTTGGTGACATTCGTGCACTAATACAT
AACCCACACCAAAACAAATGCAGTGTTACTATGTAAGCCCTTGCACTACATGGAGGTAGG
GTCAACCATATAGGACCGTAGGAGCACTTGTACAAAGGAGAAACTATTAGCACTTGTTAC
CTTTAACTGATAAAAAACCTTGAGCAACAGGGGAGAATACTTGAACAGAGGGGATCCCGC
CCACCTAACCCCTAATAAGTAAGAATATGTATATGAACAAGATTCACTCTCTTTTTTGCA
AGACTTGCTATGTTTTGTGACCGCAATAACATGTGTATGAGGAAGGATGTGCTCTGTTTT
GTCCGATGGAGACTTCTGTTTGTTTGCATGATTCATTACGTTTTCTCGACACTTCTCTAT
AATATCTTTAAAGAAAAACAGCAAAGCAAAGTAGTAGCACAATAGGGCAATGGCGTACTT
GGCTGTGAAGAGGATCGTCTTCTCTTGAAGTGAGCTGTTGCAGGGACAGGATGGTAAATG
CTGCAGCAACAACAGGATCCACATTTAAGTGTGGGGTTTCAGCCTTCCCGGTTTTACCTT
CTATTTTCACTATGAAAGAACATACGGCTGCTTGTGTTGGTCCTGCGTGAGCAGCTATTA
CGCCTGTCGGAATCCGATAATCGACATGCATGGCGAATATAGCTACAACACCATAGAGAA
CACCTTCTTTTATCATATGAGATGCACCAGCACCACCCTCCTCAGCAGGTTGAAAAATCA
GTCTCACCGTTCCCTTCATCATACAAGACAAATGTCAGATAATGAGTATATACATCATAC
CCAAAATAATAATAATGGGTATATGTGTTACTATCTGTAACTTCTGAGCATTTCCGGTTT
AATGGCCAGTCTACTTTTTTGAGGGATTGGTCATCCTACTTTGCTGAGTTAAGCCATGAT
ATCTAGTTCATTCGTTACCATCACCCTATGACTCACACAGTACAAAGGAAAACCATTGAG
GTAGTATTCTTTTTTGGACAAACAAAAGAATTAGCAAATGCCTTGTGATAACATAAAAAG
TTAAAAACCAAGGACGTCCTGTAGATATATGAATTACAAGAGTATGGTTTCCCGTCACAA
AATAACATAAAACTAGAGAACCTACACAAGGGGAGCTCGGACTTCTCCAGGGTGAAAACC
TAAGATCTTGGATCGGGCAACGATGGTGCTTGTGCACTGTTTTCTTTTGGGAGACGTTGC
TTTTGGAGACATTTTATGTGTTCCGGGTGTTCTATTTGGTGGTGGTTTGCGTGCGACTGC
TGAGAGAAGTCGATCCCTGTGGCGGGACCTTTGTTTTTTTCCTTTCTTTTCTATTTTTTC
TTTGGCTGTGTGCATCCTGGAAGTCGTTGCGACATTTTGTAGGTGCAAAGGTTGTGTGTA
ATTGGTATCTGCGCGATATTAATATACTCCCCTTTGAAAAAAAAGTGTTTTATCTAAACC
ACAGGCACCTCGTCCAACACAACTGAAGCACTAAATTCCTTAAGATTTTTAGTATAAACA
TAAGCAAGAACTTACTTTAAGCTGATCCTTGCGCTCATGAAGCAACTTTGCCGCTCCCAG
GAGCATCGCTGTGTGCACATCATGACCACAGGCATGCATTACGCCATCAACTCTGCTCTT
GTGCTCCCACTCCACCAATTCCTGTCACCCCAAGTGCACAACCGCCAAATGTGATCTTTC
GAGCAAAAATGTCCTAATATCCAGGAGCAAGTGACAGTCACATCATTCACAGAAAACTAA
ATCATGCAAGCATGATCTGTATTAGTACAGTAGTGCTCCAGAAATTCATACTTCCCGAGA
CACAGTTCCTGTTGACTGCTGCCATTCAGCGTCAATCACTGGCCACACACCCCAAGCCAG
ATTACCGGCCGAAGGGGAAGGACACCATGCGCCAGACCATAGGAGTAGCATCTGAGCCTC
AGATTCTGAGGGGAAGAGGGGAACGGACCTGGATGGGTAGGGCGTCCATGTCGGCGCGGA
GGGCGACGATCGGGGGCATGCCCGAGCCGACATCAGCGACGACACCGGTGCCGGCAACGG
CGCGGGCGGTAACCCCTAGCTGCTCGAGCTCCTCGCGGACGAGGGCGCTGGTGCGGTGCT
CATGGAACGCGAGTTCCGGGTGGGCGTGGATGCGCCGGCGCACGCCGATAATCCACTCTC
GCTCGCCCTCGGCGCGCCGAAGTAGCTCCTGCGCGCACTCCGCCGAGGCGGTGGAGAGGA
GGAGGAGAGCGAAGAGACAGGGGAGACGAGGAGTGGCCATGGTCAAGAAGAAGGTGGGGG
AAGCTTTCATTGCCGGAGCCTTGTCTCTTTTTCTTCGTATATGCATTTTACCCTACAGCG
AACGTGTAGTATGCCGTTTTTATAACATTTACTCCTCCGTTTCTAAATATAAGTTTTTTT
AAAAAAAATTTATTATGAGACTACATACGAATCAAAATAAATAAATCAACACACTAAAAT
ATGTTTATATATATTTGTATATAATTCTCTAATGAAATATTTAAAAATTGCTTATATTTA
GAAACGAAGAAAGTATTATTTATTGGACCTTTATAAATATCAAACGTTTGAATTTTAGCA
ATAGACAAAAATTATTCTTATTTCACTTTAATTATAATATGCATGCATTAAAATGATTAA
AAAAAATCACGTACACTTCTCCCTTTAGTCACATACATATACGCAATAAAGGATGAAAAT
TGATGTCATCCTAGATTTTTTTTTATCAAACTTTAAAAAAATTATAGCTGAAACCGTCGC
TCCGATTGAAAAACCGTCTTCACATAAAAAAAATATCTCGACGAGATCTTTGAAACTAGA
TCACATGTTAATATGTTTTGATGATAAAAAAAATCATCTTGACGAGATCTTCAAAACTAG
ATCTCATGTTGATATGTTCTGATGATTTTTTTTTACCAAAAGTTATCACATCTCGGCTAC
ATAAGTTATCACACCTGGCATACATAAGTTACCGTGTCATTTACACAAAAGTTTCAACAA
ACTTTTATCCTAGGGTCAAAAGGTGATTATGATGTTTGCAATGAGTTATCGGCTTTGTTG
TGTATATTACCATGTTGCACAAAAGTAATCGGGGTATGTTTTTCAACAAATTTCATTCCT
TCGATAAAAAAATACCGCAATATTTGTATATGAGTTATCAGCTCTTATGTGTATGTAGTA
TCATGTTGTTTAGACATAAGTTATTGGAAGGTATTTTTCAACAACATTTTTCCCTGGTCA
CAAAGTTACCACGTCTAGATTAAGTAAGTTATCACCTATGTTGTATGTATATTACCATGT
TATTTACACAAAGTTTATCACGATATGTTTTTCAACAAATTTTTATCCCGAGGTCAATTT
TCAACAATTTTTCCTCAGGGTCCAAGTTATCATGGTGTTTGTACCTAAATTATCTACATG
ATGCATTATTACCATGATGTTTATACAAAAAGTTACCGGGGTACATTTTTGATAACTTTT
TTCCTTGAGATCAAAGTTGTCGCGGTGTTTCTGCCTAAGTTATCAGGGTTGTCATGCAAA
AATTACCGTGTTGTTTACACATAAATTACCGGGGCGATGTTTTAATAATTTTTTCACCCC
CACTCGAAGTTACCATGAAATTTATACGTAAGTTATCTGATCCCGGTTATACCTGGCCAT
GGGATATCCGGCCCGGTCGGCCCGACCCGACCCGACAAGACCCGACCTTGCCCACGGACC
GGACTGGGGCCTAGATTTTAAGCCCGCGGGGCTCACTGGGTCGGGCTCGGGCCTAGAAAA
ACTTGGTTTTACGCCTATGTCGGGCGGGGCCGGTCGGGCCAGGCTGGGCCAGGATTATTC
GGGCTCGGGTCGGGCTTCGGCCTAAAAGCTAGGCCCGACGGTCGGGCCGGGCCGGGCTCG
GGCCTGTATTTTATACCACGGGCTTTTTTGCCCCGGCCCGAGTTTTGCCCAGGTATAGTC
CCTGTCCACACATTACCATGCCATTTGCACACAAGTTACCTTATGTTTCAGCCCAAAAAA
ACCCTCATGTGAAGTTGCCATGATATTTATGCTTCCGTAAAAATTACCGAATTGTATTTC
AACAACTCGTTTGTGCTTCCATAAAAACTCTTCTCGCAACAAAGAAAAGAAAGGTGGTGA
AAATATTTTTTTTTTTAGAAAATGAGCGAATAAAAACAACCAAAAATGATAAAACAACCA
TTTTACATGGTTTACGACCGGTGACAAAATCCAGAAATAATCAAAAAATAAATCACGTCC
GCTGCAAAAAAAAATGCATTGGCAGCATTCGACCAAAATAAAAGTGAGCTAACCTAAATT
TAATCGTTAGTAGTGAATTGTCCTGGTGGTAGCGAACCTGGAATTAAACATCCAAACCTG
GAGGTTCAATTCCGATCGTGCCTTTTTTGCGAGAAAAATGTAGTGAAGAAAAAAAAAAGA
ACTAATAGATACAACAGGTTTTAACAGAAGGGAATAAAAATCGCGAGTGGATGAGCAGAT
GGGGGGTGGGGGGTAACAGTGCGAACATTTAGAATTTACAAATTCCCTATAATAAATAAA
TAAGGGAATTTGTAAATTCCAAACGTTTGCCCTGTGTAAAGGTCCCTATAGGTCTTTATA
TATACTCTTTCATCGAGAATGACGTTTTGGAGCTCGGCCTTCATGAAGGCCGAAATATTT
AAAAAATTCAAAAATTGAAAATTTTAGTTCCAAAAAATCTGAACAAATATACAATTAAAT
AAGGATGCGATCTGTGTGTGTGTAAAATTTCAGGTCGAAATACTTTGAAACGCGCCCTGT
ACAAAAAAGCAAATCACGGTGTAAAATGATGAATAGTAACATGTGTTAAAAGATTTCAGA
TTTGTATTTTTTGCACAGCCCTCATTTCAATGTATTTTATTCTGAAATTTTACACACTTG
TGTATTATACCTTCATCTATCTATGTATTTTTTTAGAATTTTTTAAAATATTAAAATACA
TTTTTTCATGAAATTTGGAGTTTGAATATAAAGGCCTCTATGGAGCTTGGGAGTCAAAAG
CAATTTCCGCTCTTTCACCTCGCTTTATAAATATAACAACCACCACAAACACACACACAT
AGTACAACATGCTTACCAAGAACACAACTCAATAAAGCCAAAAAAAATTAAAACAAGGCC
AACTAAGACACAACACGCAACCAAAAAGCTAGTCCTATTCTGGCAGCAGCAGGAGAAGTG
GTGGAGCCAAGCGGAAGGCCAAAATCCTAAATCCGGCAGTGAGATCATCAATGGGGCCAC
GGTCCTGGCCGCTACTAAGCGGCTTTCACAATTGCAGAAAATCAAATAGTTTGTAAATGT
CATCAGTAGATCGTGGCAGGGGAGATAGTTTAGCAACTAGCTTGTTGTGGATCGTCCAGA
GTGTCCAACCCCAATTCCCAGCCATCTAATGTGGCGGGATCCCACAACGCACGCGTGCAA
TTCCTCAAAGAGGTAAAGGAAGTTCGTGTGGCACCACCCACTCAACCCCTTTTCCTGAAG
TAACTCCAAAGGAATTGAGCGATTACACGAAAAAAGGAAATGTGTTTGGAGTCCTAAGTT
GTATCTCACATGGGATAAATGCCATCCCCGGGCCATGACGTTTAAGTGCCTCCACCCCTA
AAGGTACCCTACCCTAGATCCATAGCCATAATAAGATCCTAATCTTCAAGGGAAGCCTAA
TTACTTAACCAACGCAGAGTGAGGGGCTCTGGCCTAGAAGAAGGAGCAATGGCATGGTAG
AGCAACCTTTAGGAGAACCACTGATGTGTTCAAGGAGCCAGAACAACCCTGTCTAGCTCC
AAGCTAGGGGTGTGTAGAGCCACACATTCTAAAAGCTCTTCCAAGGAGGCTTGCTCGGGG
GCGTGGAACCCTAATGGAAGGTGGGGCTTCCAAAATCTCGCAATGAAGGGTTTTCTGGAG
GCTACAAAAGCTCATGATAAACATGAGAAGGCTCGACGGGGACGAATTAATCAACACCGT
CCTAGCCACCTTGGAGAGCCATTGGCCCTACCAAGACTCAACCCTATGTTGGATCTTGAC
CACGCCCGACCTAAGATTTGCCACGGATAGTCTCGAGTCAATAATAGGAATCCCCATGTT
TGAGGTGGGGAAAGTCCCAAGTTTGCAATTGAGGCAGTCAGCGATGCTTTGTGGATCATC
CTCCGAAATTATCCACTATCATCACTTCACTCTTGGAGAATTTGATGGTTATTCCTAACA
TGCATCTGTTGGAAGAAAAGTAGGAGAAACTTGAGGTTCACAATATCCCACTCCGAGCAT
TCGACCATGATAATCGTGTTGTCGGCATGGAGAAGGGAGACCCCGCTCCCATCCACTAGG
TGGGGAACCACACCCCGGGTGGCCGCCCCCTTGGGTGCATGACCGAATCCACAGAGGCAA
TGAGGGCATCGACCACCATGTTGAAAGGAAAGGGAAGATGGTATACCCTATCGAACCTCA
CAAAATGTAGGGAAAATGGCCTCACTTCACCATTAATATTAATTAGTGGTGTGCCCACTA
CAAACGAGTTGCATGACCCTAGTAAGCCAATGGTCAAAAGTGTTGGGGAACGTTGCATGG
NNNNNAAAAAATTTCCTACGCTCACCAATATCAATCTAGGAGATGCACATCTACAAGTGG
AGAGATTGAATCTACAT