morexGenes - Barley RNA-seq Database

Contig contig_38952
Source Contig contig_38952
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38952 (7554 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_38952

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54190	1	992 bp	AK354505	Available	Available	None
MLOC_54191	2	1742 bp	MLOC_54191.1	Available	Available	LOC_Os01g43080.1, FRAME:-3, EVALUE:2e-88, 13101.m04442 protein exonuclease, putative, expressed
CDS Structure of MLOC_54190

CDS Structure of MLOC_54191

Contig Sequence (7554 bp)

>contig_38952 7554 assembly3_WGSMorex_rbca.fasta
TAATAGCTAGAAAGTCATTTAGTGCTTTAAAAATCCTCCCTCCGTTCCATAATATAAGTC
TTTTTAGAGATTTCACTAGAGAACTACATACGGATGTATATATACATACTTTAGAATGTA
GATTCANNNATTTTGCTTTGTATGTAGTCCCTTAGTGAAATNNNNNNNNNNNNNNNNATT
TAGGAACGGAGGGAGTATATCTTGCAAGATGGCTTAGCTTTTTCTTTTGGATGTATGCAT
TCTGATATATAATAGAGTATCAATTATATGAATATACCTCCATTATAAGCGGTTTATCAT
TCAGTTAATATCATAACACTAAGTTTGTTCCTATTAATTTTACAGAGTATCGATCATGTG
AATTATGAGGTGGAACACAGGACCGAGTGGTGCCAATCCAACGGCACATCGGTCCCATGT
TTCTTATTTGCCAGAAAGTTCTCATACGGCGCCGCGATGCATCTGTTGGAGGATGGTGCT
TTTGGTCTGCTAAAATCTGCTCAACTGCTGGTTAACTTTTAACAAATTCTTTTGTATATG
TACGAGCTATCATTTTTCGTGTGGGTGGATCAGTTCATAGCCAGGTCCAGCTTCGTTGGT
TGCAGTAGCATTTGCAGCTGAAGCTACTCAGCGATGGAGTATCATAGTTTACTGCTATGA
TTTAGATTGTGTATAGATCATCGGAGCAGAGTAGGCTATTGTACAGAGCATCATTGTTGA
AGTACGGTAATAGCATCAGGGTGCGATCTCCGACTGACAGACTGAGGCTGGGATGCAGCG
TCAACGGCTCCGTCCATGACAAACAATGAAGCATATAAAAATAGAAAGGAAAATCTGTCG
CAATGGTATACTATGAGAGTAGGAAAGGTGCAATAATAACTTTGTGTAAATGATCTATAA
GAACAAAACAGAAAGGAAGTTTATTTCTTATACTTTTTTCTTTTACATGGAAATGCTTCG
TTGTTATTCATTCCGTTGCCCTTCGATGTTTGAGATCAGATTTTCGTAAATCTCCCTTTC
ATACTCAGAGAACACCGTCTGGACGCAACGGAAAAAAAATGCATGTCACACTCATGTTGA
GCAAAGAAGGAAACCTCCAGGTTGAGTTCTTTATACAGAGCCTCCATTTTTGCAACACAA
GCATGATCTGATTTCCCATAATTTTCCTGTGCATGGCACAAAGGCATCAAGATAGTTTCC
TGGCAAAAATAAAAAATAAAGATATTGAGATTGTGTGCTTCATAGTATTATAGAATGACC
CAATTCACGTGCCTTACAAATAGGATGTCCTTTTGCTCTCGTTGGCGCACACTAGTGCTT
GAACAAATAGCCAAGAGCACTTGAAGTCCTCAATATTGGTTCCAATATGGGACAGGATGA
TTTCAGAAATCAAACAGCCTAGAGCACAACTAGTAACTTCCTTTTTACAGTAACAGAGGA
AGTGAATCAACTTACCTTGCCCATAACTTCTGGAAAACCAAAACAGACGAGATAATCATC
CTGAAAGGTAAATCTGGCTATTTAAACCACTTCTAAAAACATAAATACCGAGATGAAAAT
ATGTATTCAAGTGACAAGAGAAATGTACGATTAAGCCTTGTTTGGTTAGGGACTAATCCA
CATGGATTTGTGGGGATCCACGTGGGCCGTCCCAATGAGGAATTAATACACGTGGATCGT
ATTTTGACTATTTGGTTTGACCCATGATGAAAAAAAAATACCGGCCCAAACCAGGTGGTT
GCACAGGGGTTAAAATAATCGTGCTCCACTCGTGGAATGAATCCAGGGGCGAGGCGAAGC
GAATGCTGCGGCGCAAGACGAGGCGAAGGCAGCGGCGCAATAACATGCGACTCCAGGCGA
ACCCAGAAAAATTTCGATGGCAGTGATTAAGGTGGTCGGAAGGGATTTTTCAAAACGGAG
GCAAAGATTGTCTCATCTATTAATTAAGCAGAAGAGAATTGGTCGGAAGGGATTGATCCC
TGTGAGGATTGGTGACAGAAGTGGATCTACGCAATCCCTTGGTTGATTTTTTTCACTAGG
GTATTTCTTCAGCTATAACCAAACAAACCCTGAATGGTATTACCTGAATTTGGAAGTCAA
CAACCATTTCAACTAGGATTTGCTTCACTTGAACATAATCATCCAAACTCCCACCGGACA
ATAGCAGTGCACAAACGGCCTTTGCAATAGGTTAACAGAGTTTTACTGCTGGGGAATCAT
AACTAGTGCTTCCAGAAAATGTAAAATGGACATTCTCTTTTACCAGTAAATAGAATGATG
CGGCTTTCGCTGATGCGTCATATTTGAAGCACTTAGACAGGGATGCTTTGATAACCCATT
TTAATAAAGAGATGAATCAAGGGAAAGGCAGCACTTAGATAGGGATGCTTTGATGTATCA
TATGGGTTTATTATTCCATCAACTTGATTTACTTACAGATAAAGTGGAAAAATCAAGACT
TGTGTATATCTGGAAAGAACAAGGAGTTTGGTATGATTCTCAGCAGGCTGGAGCAATATC
TTACATGACAGATTTAGAAATGCTAGAGACTCTCTAAAGGAGGTGGAGAGACAAAATCAA
CATTTATTATGTAACAATAATATCATCAAGAAAAGGAGAAAATATTCACGCCAACCACTT
ATAAAGAAAGGGAGTTCAAAGAACACATGACAAGTCTTGCTGAGTCCATGAGAGTTTGGC
AATCTTGTTACAGATCAACAAGCTATCATTGCAAGTAAAGTTAAGCACAGTGAATCGAGG
TGGTTGTATTTGAATCCATTCAGTACTGAGGGTAACTGTTTATTTTTGTGAAAGATAGAT
TATTTGATGCTAATTAGTTTTATCTTAAATAGTCTTGCCATATGTTTGTATTTCTCTCAT
AGTACTTATCACCATTCAATGCTTGTATTTCTACTAATAAGGATGGTCTCCTTTTCTTTC
ACAGGGTTTGTGCTCTATTTATCCTAACCAGTCTTGCCATCTCAGTTCTTTGCAGTGGCC
TAACACTATCCATTTATCTTTCTTTATTCGTCATCAATGACTCAATTTTAGTTAGAAGTC
AAATCCATTCAGAATTTTTTAGCAGAGAAGGAACATTAACTAAACAAATCTACTATTAAT
GATAACAATCGAGACCAATTACATCAAGAGTAGACACTAATTTCTGAGGTCAAGTTTGAT
TTCAGTGACCACTAGACTAGGACTAGAGTAGAATCAGCTCAGACTCTGATACTGATGGCT
GGCACGATCAACACTAACAGCTGAGCTGCACTGGATTCTGAATCTCAGTCTCATGCCGTG
GCTCGTTCGCTCAATTGGTCCACACGAAGCTCATGGCCGGCGTCCAGTCGCCGCACCCAA
AGAAGCTGTTGACCTGCATCGGCCCTGGCACCAGCACAGGCACCCCGCCTCCTCTGGTCA
CCACCCCGCAGTAGCACAAGCACGTCGCAGAGGAGCCACCGCAGGGGCTTATGTGAGGCT
GCGGCAGCTGCTGCTGTTGGATCGGCAGCAGAAGCGGTGGCGCCGATGAGCCACCGCAAG
GCCTTGTGTGAGGCGGCTGCTGCTGGATCGGCAGCAGAAGCGGTGGCGCCGATGAGCCAC
CGCATTGGCTTGTGGAAGGCGGCTGCTTCTGGATCGGCGCCAGCGAGCCGGTGATGGCGA
TCTTGACCCCGCGCCGCATGATCTCAACAAGAAGCCGCGCCGTGTTGCGCGCGTCGTCGA
GTCCGCAGTGCAGGCGGCCCTCCCAGTCCAGTCCCGCCGCCCGCACCGCCTCCTGCAGGT
TGACCCGCCCTCCGCCACCGAAAGCCGCCTGGAAGGGGATCCTCAGGTTGATCCAGCGAT
CAAAGTAGGAGGGCTTCTCGATCCCCTTGAATCGACACTCGAACTCCAGCATGGTGCGAC
AATCCCAGTCCCCCCAGGTCACGACGGCCAAGCGGACGCATCTCCTGTTCCCTGCCTTCG
CCGTTGCCGCCTTCAGCCAAGCGTCGTGCATCCAGAGCGCCTCGCCGAGATCCACGCCGC
CGTCTACGTCCTCCTGCCGGATGCCGGTGAGGTCCCTGCAAAACTGGGTCAGCACGGGCC
GGTGTCTGGGGCGAACGTACCTGCGGAAAGCGGATTCGATGAGGCCGGTGGCGCCGTCGA
CGAGCACGGCCGGAAACTCAATGATCTCCTGCGGGTAGATCCGAGCGTCCTTCTCGCAAG
TCGCCTCGAAGTCCACCACCAAGAAAAAGTCGAAATCTTGCTGCACCTGATGGCCCAGCC
CCTGCCCGCGCGCCGCCATGATCGGTGCCATCTTCGCCATGCGCTCGCCGGATCGCCGAG
CAAACTGGAGATCTGGGAAAGCCGGGAGTATGCGCGAGCGAAGACTAGGGTTTGCGAACC
CGCTGGTGTCTCGCCCCCCTTATTAAAAACTATCGTTTCCAGCCGAAATCGGATTCGTTT
CTTCGTAATCGCTCGCCGGCAACAGTTGGCGCTTTTTTTTATTTAAATATTACCGCTTTA
TTTAATCCTCGATCCTCGGAATTTCATCCGATATCACATCTAGAACAAAGTCTGAGGAAC
CCCAACCACACCTTACTCAGTTTATCCCCTATCCCAACTTTAGCTAATTTATGTGCAGCA
ACATCCGCCGAACGACGAATCCATTAAATCTTACACTCGACAAACATCCCAAGTGCAGTT
TTTATCTCCTGTATCCATGGCCCAGTAGCGGAGAGGTTCCTTGCAGGCCGGTTCAACATG
TTCACCACTTCCCTCGAATCAAGCTCCACATGCACTCTTGTAACGTTGATTTCAGCCGCC
ACTTGCAATGCCCTCTGATATGCTAAGATTTTCATAGCTTCCGGGTCAACAATATTAGGC
AAGTGATGGCAAACCGCTGCCAGGAACGCCCCAGTGTGATCTCTGAGCACAGCTCCTCCA
CCGCCCCCTGTTTGGACACCGGCCCATCCGAGTTCACCTTGACCCATCCTTCCACACGTG
GACTCCAGCGTTGTGTCTCCCTTTGCCTCGGCTCCGAAGGCAACCCCCCATGAACCGCAC
GCCATTCTTCCATGTGTGTAGCTACACAGATCATTATTTCATGTGGCGGGGCAATCTGTT
TGCCGTCCCTTGCCTCATTTGGAGCCAGCCAAAGCCCGTAGGTAGCCTGCACCATCGCCT
CCCTTTCACTGTCAGATGCTCCAACGAACCATTCCAGGAGCCAACGAGCAAGAGCACTCT
GGGAGTTCGTCGTACACGGTGGGATCGCCACCGAAACTCCCTTCTCTGAGTGGAAGAAAC
CGCACAGAATGTTGGCATGCCCAGAAACGGTGGCGAATGGTTTCTTCTCGGCCACACACA
ACACAAAAAACTCCTGGTTTAATTCGTCGTCGATGTAGTTCATATCCTATAGCCAAATCG
TTTTTATCAGTCTCCACATGTGTATCTTAGCTTTAGCGGGTGCAGACGTATCCCACAGCG
CCATGAACCCTTTATGCTTATTCACCGAACTAGAGGACTCCGGCTATTCGGTCCTCGACC
TCCATATGGACTGCTTCAGGTGGTAAGCTGACTTGACTGTAAAGCACCCATTTTTGGTGA
AATTCCATGCGATGTATTCCTCCTCCCCTGGCCCTCCGACGGCAATTTGTTTTATATCCA
TCACATCGTCCGGAGAAAATATAGCGTCCACCTTTTGGACATCCCATGAGCGCCCATCCG
GAGTCAGCAGATCAGCCACATGCGTCACACGAGGCATGCAAATTTGTCCCAATGGCTTCA
TACTCCCACTCCTTGGGATCCAATTGTCGTGATGTATATGCACATTTGCTCCATCCCCTA
TCCACCAAATTGTGCCCTCCCACAGCTGGTCTCTACCATATAGGACACTTCGGTACGTGT
ATGGTGCATTGGACGGACAAGTGGCCGTCATGATTGATTGCTCTCTGAAGTAGCGTGCCT
TAAGGACCCTTGCACACAGGGAGGTCGGTTCTTGCAAGATCCTCCATGCTTGTTTCACTA
GCAAAGATTGGTTGAACATCTCAGGGTCCCTGAAGCCAAGGACGCCATCCCTCTTTGCCA
CACACATTTTTTGCCAAGATACCCAATGCACTTTCTTATTACCATTTTTTGCACCCACCA
GAATTTCGAGGAAATCGAAGTCAAGTTCCGGCACATTTTCTTTGTGAGCTGAAAACAACT
CATGGTAAAAGTCGGTCCAGTCTGAAGTCCAAATTTAATCAGAACCTCCCTTGCAGCTTT
GGACAGTCCTAGCCCCTTCCATCCACCTACTTTTGTCTTGGAGCTCTCGGTGACATACTT
GAAAGTACCTTCCTTTGATCTCCCAACCAGTGTTGGTAATCCAAGATACTTCTCGCTAAG
TGCCTCTGAATGAACCCCAAGAACACGCTTGAGCTCTTCCTACTAATTAATCGGCGTTCA
CTGAGAGGCTGCATGTTATTTGGATGACGACCAAAATTTTGGCAGGCCCACAACCTCAGC
CTTTCCTTTCTACTTCCTCCTTGCGCGAAATAAGTGTACTTCTAGTTCTACCTTTTGTTT
TAAAAGCATCTACTCAAATGTTTACGGATTGATCGGTCAAGCTTCAAATAATGGATTCTA
TAACCGAAAAATTTAAATTGGAAACCTCGAATCCATACTATTATATGCAACATAAACTTG
ATAGTAAGCGGAGCTCGTTCAGCTTCGCCATATCCATGTCCAGCGGCCAGCTGCACCCTT
TGAAGCGTCGGTCCGGTCACCGGCAAAGTAGATTAGGATATGGGACACTAGCCGGATCAT
GAGAGTCGAGCGCCGCTTGTCTCATATGTCCTATTCTTCCTCATCGGATCCCGTAACACG
GATGGTGTCGGTAGACGTGAGATCGATGATGGATCCCTCCTGGGAGGAGACAACGTCCAC
AATGACATGAGTGCGATGCCCACACTGGTTCATCATACGATGCGCCGGAGAGTGCGACCT
CGTCTTCCAACGTCCACTGCCGTGAGGGCCTTCGTCGCCCGGGCACGCCACGCCATGTTT
GCATCCATGGACATCGATGGTGCGCCCTTGGCGCGCCAACGGAGGTTTTTACCATTGTGA
ATAATGTTTACATAGGAATTATATTTTACTGGAATAAAACTATGTTTCCATTTCTCAAGT
GTCAAAATAATTTTTTCGTTAAGGAAGTGCTTGAAATAAGTTTTGAAATGGAGTATTTTC
ACTTTTATACAAAGTAGACCACATTGGAAGCTCATGAGATTTCAGAGTATTAATTATTGC
GATATTTCATTGATTTGTTGGATTTCTAGTTAATTATTAAAACTTGCTTAAATTTGAACT
GCAAGGATGATGTAGTTTGGTCCTAAAAACTGGAAAAAAAATCATGCTCTAATAATTTTT
TTTGACAAGCTACTGTAGGGAAAACACCCCACAACTTTTCTTTTATTCCAGTAAGAGATT
ATATGTACATGAGAGAGTTAGGATATACAAATGGGGTGGGGGTGATGAGATACAAACCTC
AAGGAGGTAAAAAAGAGATCCACTTAAGTAGATCATCCCTAAATCTAGCCTTAA