Contig Data
morexGenes
Links



Map Locations of contig_38907 (3312 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38907

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54126 2 2128 bp MLOC_54126.1 Available Available LOC_Os08g41880.1, FRAME:-3, EVALUE:0.0, 13108.m04500 protein nucleotide pyrophosphatase/phosphodiesterase, putative, expressed





CDS Structure of MLOC_54126






Contig Sequence (3312 bp)

>contig_38907 3312 assembly3_WGSMorex_rbca.fasta
TTCGTCTTCCGAACCGCGACTAAAGAATTCATTAGTCGCGGTTCCTACAGTTTTGCGACT
TATGGGGCTGGACGGAAGCCTTTTTTTCTACCAGTGAACATCACCATGATGTACAACTGG
ATGGTCACATAGCGAGTGTGGTGGGGAAGCAGCTGTCGTGCACGCAGCTGAGCACGTCGC
GGTAGTCTCTCTGGATGGTGAATGAGTCGTAGACGTTACCATCACTACTCTTCTTGTACT
CGAACAGAAGCGACGAGTGGTTGAAGGAAGTGAGCTTGACGAAGCCGTAGTCTAGATCCC
TAAACAAGCTCCACTTGGGGATGGCCATGGCGTAGCTGGAGAGGTGGCTGCCGCCGCCGC
CCGCCACGACGAAGATGGTGCCGTTCATGGTGCCCGAGTAGTGGCTCTTCTCGTTGTTGA
CGCACTGGCTCTGGTAGAGCGGGCACGTGCGCTCGTAGTTGTGGACGTGGCCGAAGAAGG
CCATGTCGACGCGGTACTGCTGCCACAGCTTCTGTAGGCTCTCCCGGCCCTCGGGCTCCT
CGTAGGAGCCCTCGGCGGCGTACCACGCGTTGGAGGAGTAGCCCAGCACCCGGTGCGCAG
CGAAGATGAGCCATGGCTGGTGCTTCCGGTCCACCGTCGAGAGGCACTCCTCGATGAACT
TGTGCTGTGGAGTACCTTCCCTCCAGTCGTGCCCCGTGTCCGCCACGCAAAACCGGAACA
TCCCGTAGTCCACCTTGTACCTTCGAATGGATGGCGGCCATTTCAGGTTCAATGGTTTCG
AGTATATATATGGAAACAATACAAGTGGCAGCAGATGTTGAAAAATGTGTGTGCATACCA
GAAGTTTGCTCTGTTTTCGGCCGGATAGTAGTACATGGTCTCGGCCGGCACGCCGCACTC
ACCGCCGGAGTCCTTGACGTCGAAGAATCCACCGGTGTTGGGCCAGTCCCTCTCGTGGTT
ACCGCTGCAGATAAAAGACAAGGACACATTTTTACATGACACTGCTCCATAGGTACACAA
TGGCCCAACGTGATTTTATGTATCATCTATTACGTACCTTGCAACCATGTAGGGCCTCCT
GGCACTGATGGGGGCGACCTGTGCGGTGAACTGATCCCACTGAGAGAGGTACCCGTTGGC
GTAGGGCATGTCGCCGATGTGGAACACGATGTCGTAGTTGTCCAAATCTTCGACCAGTGT
GTCCGTCGTGTTCAAAGACCCCGGCTGGTAATTGGCGAACTCATTCGATCCGTCCCTCTC
CGCCTGAAAATGAGAATGCCAAACAATTGTAGCATCTGACTATGTTTCAAACGACCATAT
ATGCATGCCGGATTCCATCTATCAACATCAGAGTTGAGGGTACGATATTTGACATTTCAT
CTAGTATTTCATGTCACAAAGAGTAGTAGTACCTTTCCCATGTCACCGAAGACGATGATG
CGCTGCAACGAGTTCTGTCCAGGGGTTGGCGGCGCTCGGAAGGTGTAGGGCTTTCCCCAC
ACCACGGTCCCGTCGGAGAGCTCATGCCCAATCTTGTAAAAGTACCTGCATCACAAACCA
GCCTTGTTCTTGAGTAAACGCCCGGCTGGCAGTATCAACACATCTGCCAAAGGACTAATC
AAGTCTATAATCATTTAGTACTCTTTGTTGGGCCACAGATCTCTCATGAACGCCGTGTGG
ATGAACCCGGGGTCTCTCCACCCAACCGTGCGCGCCGGCTCGCCTAAGTGAAGACACACA
ACGCACCACTCTCGTCAGCTTCTCTCGTTTCATCGAACATGAAATCATGGGCAGAAACAG
TGTGCCTACGTACTGCACATGCTGCCGCGGTTGAAGGTCAGCGTGCCGGCGGGCGTGCGG
GTGGGGTTGGTCGCCCCGCCGCCGGTGGTGACCATGCCCCACTCGACCAACGGGTAGGCC
TCGTCGATGTCGTAGCCGCTGGTCCACGTGACTGTCATCTCGTCGTGGGTCTTGCCCTGC
GCCAGCCGCGGGAACACCGGGGCCTTGGGGTTCTTGAACGCCACCGGCTTCGACACCGCC
ACAAGTTTCGGCTACCAAAAGTAGGAAAACTTACGTAAAACCACCTTCACGACACATAAA
ACAGTTTTTTGTTTTTGCGACGAGACATAAAACAGTCGAGATCGTGGCAATGTAGTAGAA
CTAGTGGTTACATTTTCGAAGCCGCCGGTGAAGAGGGCGAAGGAGAAGTCGGAGCGCTGG
TTGATGATCTGGAACCGGATGGTGCCCTTGCCCCAGTAGCGGTAGTTGCCCGAGTGGTTG
GCGTACTGATACTGCACCCACAGGCCACAGCCACACATAAACCAAAAGATCAGTTCAGCT
CGATCTTCATGCATGGCCGGACACATGCACCAATACAATCCATTTTAACTGGCAATTGCC
ATGCATGCATGAATTCTGAGAGAAGGCTAGTTAATTAGTAAACCGACCTTGATAGGCGCT
GTGCAGAGTGCCGGCTCGTCGGCGTTCCTCCGTGGGTTAGGGCACGAGCCCGAGCTGCAT
ACGAACAAGAGACAACAAGGATTAGAAACTGGTTGATTTGCGACTGGAACGCTAATGAGG
AAAAGCTTATTTTACTACATGAAATCGGCGGGGGAGAAGACGGCGATCCAGTCGTCGGCG
GAAGGGTTCTCCCACCCGTATTTCACGGTGACCCATACGGTGTCCTCGCCCTGTCAGGGA
CATCTGAGTTGCTTAGACATTTTTTCCATGACATAGAACAATTATTTAGCACTTTGTTGC
TTTCCACATTCCAAATCCAAATGGATATCAAGCTAATGAATACTGTATTACTCTACTAGT
GAACGAGCTAATCAATGTACGTACCTGGTCGCCGAGCAACGCCGGCGTCGCCCGCACGTA
CGCGGAGCCGTGCAGTTCCACGGTGGCCTTGTGGATGGCGATCTTGGACAGCGGCTGGAT
GCCCTCGGGCGGCGACGCGCCCACCGTCGCCGCCGCTACCGCCATGGCCAGCACCGCCGC
CAGGAAGACGTGCGCCATCATCATCTCCTGTATCATATACGCACTGGCAGGCAGCTCCTC
CTGCTGCTACTGGGGTCCAAGCTGGTGAGTGTCCAGTGTATGCCGGCCTATATGTAGTAC
GTACTGCCACCAAGTGGCAGGCCGCGTGAACCACGGGCTATGTTAAAAATTGGTAAGTAC
GTAGGACTCGATCCGTGGCCTCGTGATTCGTGGAGCACGTTGTTATGGATCTCGGCATGT
GCTCTTGCTTTCTTTGGCTAATCTTCGTTTATCAGTCAAGACACATGTACACTCTCTCTC
TCTCTCTCTCTC