Map Locations of contig_38898 (10860 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38898

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54112 3 1687 bp AK366224 Available Available None
MLOC_54110 5 2654 bp MLOC_54110.1 Available Available LOC_Os01g70550.1, FRAME:-2, EVALUE:0.0, 13101.m07668 protein heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed
MLOC_54111 1 1137 bp AK373956 Available Available None
MLOC_54109 1 163 bp None Available Available None





CDS Structure of MLOC_54112






CDS Structure of MLOC_54110






CDS Structure of MLOC_54111






CDS Structure of MLOC_54109






Contig Sequence (10860 bp)

>contig_38898 10860 assembly3_WGSMorex_rbca.fasta
ATGGTCGCAAGGCTGAAACTTAAAGGAATGGGATAATTAATTTTGTGCCCTTACTTGTGC
CCCCTTCGGCAGGTTTACCCCTAGTTTCGGAAAACCATCGTTCTTGCCCAACTCACTTTG
ATTTTCTTATGCTTTTTCCCTTCCGTCATGGTTCAAAAATAATATAATAACATGGAACAG
TAAAAAATTATAGATACATTGGGGACGTATCACCCATGAGATACATAAACTCCTTCCAAG
TAGCACACGGTCTTCTCCCATTTGTCATCCAAGTTATTGTCCTCTCCTCATTGGTTTTGA
GATGGACCGTGGCAAAGAACATGGGCACCAACTTTGCATCAAAATCCTTGTTGAATGTCA
CGAGCTTGGTAATATCTAGCTTGTCACACACGCAAGAGCTTCACGAAAATAGTTAATATT
CTCTGCATGTGGTCAATATCAATGGACTTGACATGGGGAACAAACAGGTTATTTTTCTTC
TTGAGCACATCATGATATATAGAACCTTGTTGCTTGGTCGAGAATGGACGGTTGATAAGA
GCTTGATCTTGCAGATTGATGTACGGGTTGCGGCGACGAGCAATGCAGAACTCCTTGCTT
GGCAACTCACTCATTGACTGAGTCCTCGGAGACTTGGTGGCAGCCTTATTGGTTCTCTAC
TTGGGTAGGGCACTGGGGTTGGCGTTGGTACTGTCATCCTCTGCGGTGCGGAAATGCTTA
CAGCTAGTTGCACGACTTGGATTCACGCGGCGCTTCTGATGACCAGAGCCGCTACCATCA
TCTGAAACCCACAACACAGAGCAAGGGAAAAGCAGGTGTAAACAAATTGCATAAGCCAGA
AAGAAATGAAAGATTAGAATTGAAGTAGAATCGAAAGATACGTGAAATCTGGATACGATG
CCATGCCACAATTCTTAGATCAAAAGAATTGTAAAATGTAGCCTATCCCCTTTATACACA
GTTTGTTTTCGCCTTTGTCTACAGTTCAATGTAGGCTTTCGTGCTAGTTCACATGTAGCG
TACAAGGATGACATTTCATAACAGAATTTAGATGCAGCATGTCATGAAAAAAATGTCGAA
AAAAGAATAATAAAGCTAGTACATCATGCTTGCACATAGTACTCTGGTTTCGCACCACAA
GAGGAGGCCAAATCAGTAGTATCATCACATCACAGCGCCAATGCATCACATCGTTGCATG
ATAGCGTGATTCTAGCCGATGATTTGTAACTTGCTAGCAATGAAAGATGACTCGGCTGGC
ATTGGATTTGCTTGTAACACTAGTCTCTGCCTAACAGTCCTCTGCCTTGCGAACAGTTTC
AGAAAATCAAAGATGGCTTACTACATGCATCAGACTGGATACAAGTTTATATTTCTGGAC
AGTTGGATCAGACTGTGGATGATCAGAAGCTAACAATGTGCTAATCATAAGTTAACAAAT
GTGACATTCTAGATTGCTAATTACTTATGTATGAATTCTCCCCCCATAGTCCCATAGGCT
ATACTGCTTCTGCTTCACCTCTGAACCATAGATCTCATCTCACTAGGTGCAGCCCTTGTA
GCTTTTTGAAGCTTAGTCATGCTTCTGCTTGGGATCATGTTGAAATGCTTTTGCACCTTC
CTTGTCTTCTTACACACATTCTGCACAATTCCAACACACAAGCAAATGATGACACCAATA
CCCTCATGGGTGGCTAGAGCTTCCAGTAAACCCCGGCCCGGTGGAGGAGGCCGGCGATGA
GCGCCCAGAGCAGGATCTGCGCGACAAGGACGTAGAGGAGGATGCCCACCCTGGCTGAGT
GCCATACCCGGACGAACACGTGCTTCCTCACCCAGTAAACCTGCAGTGGTGACAGAATTT
CTCAGCGTGTGCTAAAGCCCGAAGGTGGTCGATGTCAAGTAGCTAAGTTCTTCTCAGTTA
CCAGTGTGTTGTTGGGCCCGTCGTAGTACCAGCCGTTGAGGAAGCCCTCAAAGATGCCCG
CCGCGGCCATCACGTACACCAGCATCGCATTCATGCCGACCCACCGCAGCGGCGCGAAGA
CATAGCACAGGTGCACGACGTCGACCTGGGGAATCCACCAGGTGTCAACAACAATGTTGT
CGTCGACGATGCTCGGGATGTCAGCCATGGAAGATCACATACACTCAGGATCGAACTGAA
CTCATGGAATGTCATATGGGTATGCCTAAATTATTCTAGGTGGACTGGAGGATTTGAATG
CTCTATTTTTTTCTACTGATGTTCAATTGTTGTTTCACACACCAATTTAAGAAATAAAAC
TAGTTTTGGAAAATTGAGAAGGACATACAAGGAAGTAAAGCATGGAGAAGATGATGCCAG
CGGCGCCGGCGGTCACGCAGATGTAGCTGAGCGTGTACAGCTGTTTGTTCAGAGGAATCG
CTGCAATGAAATGTGAAAGAGCAAACTTTGTTGAATCGTATTCAGACAGGGGAGGAGTGG
AAGCATGTATAAGTTGTAACTTCTTTTTTTGTTGAATGTGTATTGTGTACTCTAGTTACC
ATGAGAGAAGTGCAGAATGATTCCAAGGAGGAGGAGAGCTACGCCCATGGTGACCCACTG
CTTTAGCCTGTCCATATGACTCTGAAATTATACAGGAACAATAAACATGTCAACAATCAG
CATGTCTGTGTTGTGGTCAGTCCATACTCTACACCGACAAAAAAGAAGGCCTGAAATGTG
AGGCAAAATCACCTTCATATGAACAAGCACGTGCCCGTAGTGTACGCCAATGATCGTACT
TAACACCGCTGAAAATGAGCTGCAAAAAATATCAAAGAACCGTGTCAACAGTGAACTATA
TATTACTACATCAGATGATCAGAAATCCCACCATTGACATGCAACAAAACATAGTACCCT
TACCTTAGTAAACCTTCAGGTTCAAATGGCGAGGCACACCATGCCGGGGCGTCCCTTTTG
AAAGGCCCCTCATGTGGGGAATCATCAGTACAGTCCTGCGTAAACAATTCATAAGTTGGC
GGGTAAAATTTTGAAGATAACTGCGAAGAACAGCAAGATGCCCTGTTGTCTGAAAAGTGA
AAACACAGACCCTGTGCCTCCTCCATGCAGGTTTCTGGTACAGGTGATTGATGCCGAGAA
CTTTACGGTCGATGTAACCTACAGCATTGCAAGGAGGGCTCAGATTTCCCCTTGTGCCAC
ATGCCACCTAAACATTAGGGAACACTCTGTAAATGAGTTTCAACTTTTCACAAAAGTACT
TTGATTGTACAGCTGCAAAATAATTAACACTAACAGGAAAAAAAATTGAGTAATTGTTTT
GCATACTGAAATCAGTTTAGGCAATACTACTGTAAATGACTTGCAACTTCACCAGAAATT
ACTTTGATTGTACAAGTGCAATAAAATAACACTAACATGGCACAATTTGCATAATGTACT
TCTATATTGGCCTCGCTTTAGTATCATTAAACTGACATGAAAACCTGAACTACGAAGTAC
TCAGTTATATGTTGCTGTGGAAATGCAGTTCAATCAGCTTGTCATGACAAGAATTTGTGA
AGAATGGTAGGATTCCTGAGCTTGCCTGGGGACACGCTTGTCAAATCATCTTTTCAGTAC
ATTGTTCTTGATGAAGAAAACTATCCATACAGACTCGGAATCAACTAATTAAGTACACAA
TGATATGGAAGGTTAATTCTACGCACATACGAGTAATATATATGCAACATCAACACTTTC
ACAAGAACATAAAGAAAGTAGAACTACAAAGGTCGGGTAATCTCATACCGTTAAAACTTT
GCCGTAGTTCGGGCTATCCACATTTCGCACCGTGAACTCCCAGTCAGGAACGTAAACCCC
GTAAACAAGGGACAAGTAGATCAAAAGAATGCAACATGCGACAATCCTTGTAGATACACA
GATGCCACAATTAGTAGATTCACAATTCAGATGGCATCAAAAAGACCTGTATATGCATAT
ACATATATACCATTGGGACAGGTACAGCCTGAAAACTGAGAAGAAGCCCGAGCTTGACTG
ATCCTGAACCCTCGCGTCTTTCGTGGCGATCTCTATGACTGCGACAACCAAGTATGCAAG
GGCAATCCTCTGAAGAAGCAAAGGCAGAATCATTCCCTGGCATGAATGATGCATACATTA
TTGTCAAGCGTTGATCGGTACCTGGAGGATACCACACCATCTTATGTGCTTCATGTCAAC
CCCATAGGTGAGTTCATCTGGAGCATGGGAGTAACCGCCTGCATATGGTGACACATTGCT
CATGTGTTAGAATTTCCCCTTTCCAGATAGGGGGCGGCGGCCAATGTCGAAACGCAGAGG
CAATAGAGTTCATGGCAGGGAGATTCAAGGAGGTAATTCGGTGTAAACAAATCAGCAAAT
GCAACCTTGCAGCAAGATCCCCCAGAAGAGCAGCTTCAGCGTTCTTATGACCACCCTCCT
GACGGCCCGGCCGCGGTCTGGAATTCTCTGCACGTTTGTTTGATTTCGAACGAGAAGTTC
AGAACAAGGAACGGTGTGACGAAACTAGCTACTGTATAGTCTGACAGTGACAAGACAATG
AAGTGCTAGGATTGAGAAGGGGGACCTTGAGGGAGAGGGGGACGGCCATGCCGACGATGA
AGAGGAAGAAGGGCATGACGAAGTCGGCGAGGTTGCAGCCGTGCCACGGCGCGTGGCCGA
TGACCGGCCACTCGCCGCCGGCGCCGTCCACCAGTATCATCAGCTGCAGCGGCGAAACGG
TCCAAGACACTTGGATCAGGATTCAGGCAGAGACACGAAACTGACAGGAAACTAGTGAGT
AGTATTGATTGGGTGGAGAGGAAGCACGCCTGGAGGGAGGGAGGGAAGGAAGGAAGCCAC
CTACAGCGACGGTGAGGCCGCGGAAGACGTCGAGGGAGGCGACCCGCCTGCTGCTGCTGC
TGGGGCGAGACGCCTTCTTTTCGCCATCGTCGTCAAGATCATCCGCCGCCGCATGGACAG
GAGGAGGAGTGCGGTGCCGGTCAGGGTCCTCCTCGGCGCCGGCGGCGTGCCGCTTGGCGA
CGCTCTGCCCCCCGTCCATCAAGAAAGGAACAAGAACGAACGTGCGGGAATGCGGACGGG
GACAGGAGATAAGAGGAGGGAGAAGAAGAAGATGGGGGAGGATTTTCTTCCGGTTCCTGG
AAGCACGCACGCACGCAAGCAAGCAATCACTCACCAGCTGCTCACTCTCGCGTGGATCAC
TCGCTCACTCACCGGACAGCGACGCGCTTGGACGCACACGGGGCTCTCATATCATCGTCG
TCGTCGTCGTCGTCGTTTTCGATGCAAGCTACCCTGCCTACACACCTACATGGGTCAAAA
TTTCTTCCGCCAGAAGGTGAAAAAGTTGCTGCTGAATTGTACTGTATGTAGGAGCGCGTC
GCGACTCGCGACACATACTTGTTTTGTTCCGGGAAACGGATACTCCCGTGATCTGATGGG
GAACCATGTTTTCTTGTAATAATTTATCGGGGAAATGTAAAAAAAACACCAACAATTCTT
AGAGCCTAGAGAACATGAAGACACGTTTGTTTGGCAGATCATGCGAGATGGCATGCATCA
CTACGAATCACGCGCCGAAAGGGACGCCGATGAGATGAGACGATCAATCAAGCAGAGTTG
TTACTGCGGCTGCGGCTGCGGCTGCAACTGCGAGACGATCTTGGCCACGGCCTGCGCCGA
GATGGGCGACAGGCTCAGCGCGCACAGGCTCTCCCACGCCGCAGCCACGGCAGACGGCTC
CTCCTTCTTCTCCTTCTCCTCTTCTTCCTCATTCTCCTTCACCTCCTCCTGGAGCTGCTC
ATTCTCCTTCTTCTCCTGCTCCTTCTCAACGGCCTCCTTGAAGAAGGCGGCGTGGGTGGA
GCCAACGATGCTGCGGGCGGCCTCGCGCGCCTCCGGCAGCCGGTCGTTGAGCAGCTCCGC
GGCCACCTGCAGCAGCGCCGGCAGCCCGAACTCCTTCATCGTCTCCACGTCCTGCCATTT
CCAATTGACACGGGCATGATTAATTCGTGCTTGCGTCAGAGAAACAGAACAGCTGGTTCA
TGTGGCCGGGCCTGGGCCTAGGATACGTACCATCCTGGCGGCGCAGTGCGCCATGGCGAC
GGCGGCCTTGGCGCGGACCCTGAGGTTGGCGTGGTGGACGTAGGCCCTGAGCTTCTTCAA
CAGCGGCAGCGGCGGCATGGAGGTGGCCATGGCGCGCATCGCCTTCTCGGCCTCCTCGCA
CACGAACCGCTTGTCCTGCGACGCCTTGAGCAGCAGCTGCAGCAGCAGCTTGTCGAACGC
GTCGGCGGAGGCCGAGGAGATGAGGTTGCCGAAGCCGGCGAAGACGTCCGCGCAGGCCAT
CACGGAGGTCTTGAGCACCGCGCTGCGCGGGTTCTTCATCGTCTTCACGATCCCCAGCAC
CACCTTCTCCCTGCTCCCTCGAAATCCGGCAGATCAAATCAGATTGAGAACGAAACACGC
CAGAAATCGGATCCATTCCCAGGTCAGATCAGATCCAGAAGGAAATCCGCCAGAAATCAG
GTACGAAAACCATACGATGGAGGCCAGGGGAGCTTACAGGATGGGGGCGAGGAGGGCGGG
GTGGTGGACGGCGAGGCGGCGGGCGTCGTTGAGGGACTCGCAGACCTTGACCCAGTCCTT
GGAGTCGAGCCCCGCGACGAGGCCGGCGGCGCGGGCCTTGGGGCTAGGCACGGGCGGCAG
GTCCTCGGACCGGACGTACTCCACGGCCGGCTCCGCAGCCACCGGCGACGCGGGCTTGGG
CGTCGGCGCCGAGTTCTCGTCGTTGCGCTGCTGCTGCTGCTTCTTCCCGTTGCCGTTGCC
GTTGCCGTTGACGCCGCTGCCGGTGGGGGAGCGGGCGGGCGGCGTGGGGAGCAGCTTGGC
GGCCTTCTTGGGCCGCTGGTCCGCCACGGCGGCCGGCAGCGTGTTGTCCAGCGCGCGGAG
GGCCATGGTTTGGACGGGATCGCTTGCTTGCTGACGGATGGAGGTGGAGATGCCGAGATG
GGGACGGGGAGGTTTGGAGGAGGGCTGGCGTTGCGGCGTGTGGATGAATGGTGCGGCGGC
GTCGGGGTTTAAAATGTGGAGGTGGTGTGGGGTGGGCTGCAACGGCTCTAAAGAGATCGA
GATTCGAACTGGCCGCATGTGAACGTTGGAGGCGCGATGCGGGCTTCGATCACCTTTTGT
ACCGTTGCCAGCCCAACAATGTTTCGTCAGCGAATTTTGCGTGATGAAGGGGAAAAATGG
GAAGGAGTAAACTCTTGATACTACCTTTGGACTGTGTTAACGTCCAGTCGACCTGACGTT
AGCGAAAGATCGGACGCAATCCATCTTTTTTCTCGCGACCCACACGCTCGATTTCATTGA
TTTTTTTTTCTTTTCTTGAAAACTGTATACGGCAATAATGATCACGGGAGAAATTGCAGA
GAATGCTCGGCTAGGATTATCAGATGGCATCACCTGATGGAGGAGTCATTGCCGCCCCTG
CCTCACTAGTCACTTCATTTTCGAAAAGGGTGCATGCACATTGTCCTCTGGCAAGAGAAA
GAAAAACCACTGCGTGCTAGCGAAGCCTTCATCTCAAAGAGCTCCCTAGTTCTTGCACAT
AAAGAAGCCGACATCGCTTACATCAAACCTGACTTCAGCTATCGAAATTTCACATCATCT
CTATTCTCTAAGATAACTTAAGGTGTCCAGTTCATCGTTCGTTCATACTAGCTCCAAAAC
TGCCAGCACGAGGAAAACAAAGCAATCTATCTAAATTCATGTCGGCGTCCTTGTCGGATA
ACTGTACAAAGGAGAAGGCACCCCCTTCAGGGTGGCCTAGGTCAAGCGGTGCTCCACCTG
GGCATCATTGCGGTGCTCGTCTGAGCCTCCCACCAGGCGTTGAACGCCGACGGCTCCTGG
CACTGCCGGTACCCCTCCTGCATGGACCTGCCATTCCTGACCAGGCCACGCGCGGCGAAC
CCCATGAGCTCAGAGGCGTCCGTGTGGCGGCTGAACCAGTGCGGAACGCCAGCGTCACGA
GATATCGGAGAGAAAATGCTCTGTTCCTCCTCGAGGCGCGGCTCGGGCTCTGCTTGCGTT
GCTGGAGAAGAAACAGTTTGTTCCGCCAGGAGCACTTCATGCTGGATCTGCTTCGGCGGC
TCTTGGGCCGACGAATGTTCGGCTGAGGACAGCATGTTTCCTATGCCGAAGGACTCCCAG
TCGACCCGCTGCCACACCTTGTACCCGTCATTGACTGTATCGGCTGTGCAACGGTTTTGG
AGCTCGGCCTTCTGCTCTGCCGCCAATCTGTCGACTTCCACCTTCAGTTGTTGCAGCCGC
TGCCCAATCCTTTCGGTTACTTTGTCATACAAGTCACCTCTAGAAATATGTTGGGAGTCG
TTACTGTTGTCAGCCATCAGGTCATCAAAGTTGATTGGGTCTCCAACAACCACTATCACC
TACAGAATCAAATAAAATAAAAACAGTTCAGTACTCAGCTAAATTCAATGAAAACAAGAA
ATATTAGTTGTGTGCGAGGGCACACACCCTTTTGCCTGTTCTTGGGATACGCTTCCCGAC
TGGCATTATGTCCTGCATCCCAGTATGGACAAAGGGGACAACAACCGGTAAGCTGTCAGC
ATCCATTACCAATCTGGTAAGAAGAAGAAAAGAAGAGGAATTAGATAGGCGCACCTCGAC
AATGGACAAAAAGTATGAAGTGTTAACACCCAACTATCGCAAAAACTAATTCGATATGCA
AAATGCAGGTTTTTTTTACATGAAAGTAAGTCAAGAGGAGTTCACCAATAATTGCAGATA
GCACAGTACAAGGAAATAATTTTCTAACCTTCCAACACCTCTCTTAGCAGGAGCAATGGT
TTTCCCTCCATCCTTTGAACGACTTCCTTCAGGAAATATATGAACCCATCCACCATTATT
AAGCTTTGAGAGCGCCATATCCATTCCCTGAACAGCGAAAGAAGAGAGCGGTGTTCTGTG
ACGAGAAAACTAAACAGACTCAAACACGTACGGCATACTGCGTCCTCTCTACAGTACCCG
GTTAAGATCCTTAGCAGATTAGAGCACTGATCCAAACATACAATGGCATTCACTTGTGAA
ACCTCTAGGTGAATTTCTAAAAAATAATGAGGCACTAGATATTTACAGGTACTAGCTCAA
AACTTTGTTTTGAATACAAGGATGTATTTGCCAGTTAAGTTAATGGTCTTAATATAATGA
TCGGAAGTTTAGCTGAGCAAGGCAAAGCCCAGTGAGTATCTCCCAACAATGTGATACTGG
TTTAATGGCACCATTAGTCAACAAACTAAATATCAATATTTATCCAAGTATATACCATGA
ATAAACTGGTTTACTAGCATCAAAATTTGCATGGTTAATCTACTGCACGCATGCTTGAAA
TAAATAACTTCAGACCCCTACATACAGTAAACGAAATGTATCTCATACCTTTTGGTAGAT
GCCTTCACCACGGTTAACAGGCAACACTTTAACAGACCTGAAGAACGTGGACAGAACTGG
ATTTGTAAAGCAACGATCAGTCGCACATAGTGTCCATCTCAGCTTTTGTGCTTCCAACAT
AACAGACGGTGGCAGAAGGGAGGCAATTACAAAAGGGTCATCCATAGCAGCCACGTGATT
GCTGACCTAAGATTATAAAAATGACAGAAGCATTGGGTGATTAGAAGAATGCATAGTGGA
GAAAAATATGCAGTAAGGAAGAAATGCACCTTGTAAGACTTGAAGCAATTACAGTTAAAA
AACTGGGCGATGCAACAATTCATAGAGAAAATATGCAGGACAAATACCACCAATCCATCA
CTTCAGTACAAGTTGCAAACATATAAGAGACTATGGGTTTATGACTACTGGCTACCTTCA
GACGACATGCCATGCACCGTAATAGAGTAACATTTTGCAATTACTCGACCACGTAGGCAC
ATACCGTTAGAAGAGGTTTGTCTTTAGGCCTCTCTTGTAATGCCTGCTGAAGTTTCTCTG
CGCCATAAATCTGCAAAACTTCATTGGTTAGCAGAGGCCCATGGGGCATGGGCTCGAGTA
TTTCAGATAATCAATCACTCTTCAGCTACATTACCTGGACAGAGTTAAGGCCGTGCATAA
AAACATGGCAAGCATTCCCGATAAGAGGAACGGCCAGCGCTTGCAGCGAGCGGAAAATCA
CCGAGTCTTCAACCCCGTTAACTTCTTTGCCCACTGCATTGACAAAGAGATGTGAGTTAG
AAACTGGTATAATAAAGAGGAAAAGGGTGCAACATTTATAATCTCATTAGTCTAGAATCT
CATTAGTCTAGAATCAGATTGTTATGGTTGTTGGGTTGTTCCCCCCTCCTATCATGAGAG
AGCGATAAAGGATGCATAACCAGGGGCGACACATTTATAATCTCATTAGTCTAAAATCAG
ATTGTTATGGACACAGGTACTACAACAGAAGGAAGGAATACACCAAGAGCAACAATGGTC
ACATCGAACAGGCATTCATTCAGCAATGTCTTTTTTAGGCATGGAGCTATCAGACAGACC
AATGGCACCGGTGTATAGAACCGCATACCTTTCTTCCTGTAGAACCTGAGGGCACTGGAG
GAGGGCCTGGCCGCCGCCGCCGCCGCGTCGGGGCCCTGGTGCTGCTGGTTGTGCTTGTCC
CGCTGCAGGAAGGCGCGGAGGCGGTCGGACCAGAGGCGGACGGCGTCGGAGGCGGCGCGG
CCCTCGGGGCGGCGCCAGAGCCAGCGGCGGTCGACGGGCGCCACGCGGAGGCGGTTGCGG
ATCTGGGCCCCGACGGCCCGGACCCCCCTCGTATAACTTCGCATAATGTATGGTATACGA