Map Locations of contig_38845 (7610 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38845

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54057 9 4589 bp AK365634 Available Available None





CDS Structure of MLOC_54057






Contig Sequence (7610 bp)

>contig_38845 7610 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCGGGCCGCCCCCGGCGCTCCTCACCCCTCCCCCCCCCCCCCGGCACCCCG
GAGGGATCCCCCCCCCCCCCCACCCTCCCTGTGCAGCAATGCACTCACGGATTCACCGTC
TTAGCCTGCTCAGTTAATTTGTTTTGCGATTTGTGATGCAGCTCGCATTCCGTGGCCGCG
CTGAGCTGCGAGGTGATGGGCGCGGCGGCGCTGCAGTCCATGCAGGCCGGCGAGGCGCTG
GCATCCGACGGCGGGGTCGCCGGTGGCTTGGCGCGGGCGCTGGGGAGTGGCAGCCAGCGA
GTGGCCGAGGCTGCCTGCAATGCCGTGATGGATCTGTCGGCGTCTCCCGTTGGCCGGGAG
CGTCTCTCGGCCTCCCCTGTTCTGCCGAGGCTTTTGTGAGCATCCAACTTGTTGTTCTAG
GTTAAAGTATACCATAGCCATAGCTTATACGGAGTAGTTTGTCTGATTGCTATGAATAGT
CTTCCAGAGATTCAGTGAAACTTTTGATTTAACTTGTATATCCTTGAATTTCAGTTGTGT
TCATGCACTAGCTTGTTTTCCTACTGAAGATTCTGAATGTGTGAAAGTGCGAATAAATTT
CAGAAGGATGAAAACCAACCTTTATCTTCACAAGAGCAAGTTAAGCTATGTGTACATTAA
GCCACGGCAGTTTTCGGCATCGAACCATCAAACGGTTTTTGTCATATGATCATATAGCTT
TGCATTTTACCGGCTATATCTAGAACTAGGCTAGCATCACAGTCTGTTGTAATTGGTGAA
AGAGATACTCCTTGTTTGTACTTCCTGAATATCTTCAGTCAGTGGAATTGACTTCCTTTA
GGTATCTATTTTCTCAGGTGGAATCTATTTCTGGGGCTGTTGGTAGCGGGAGCACCGAGT
GCCAATCAAGGTTTTCAGAGCCAAGTAAATGTTTGTACTTGATCATCGACACAGTGGTGC
TCATGGTGAACTCCTGTAAAGTCGACAAGTTACACAATCTGCAACAAGAGCTAGTAAGAA
AAGTCACGCATTTGTTGTATGAAGGATGGAGCCAAGTTAGACTCTTACGGTCGTCAGCTG
ACTGCGGCAACTGGAAGGATCAACTTCAAAGCAAACCATATGAGATATCTGAGGCTATTT
TTAGGCTTTCGATGGATCTTGCTTATCCAGTCCAGCTGAAACCTGATGAAGTCAGAAAAA
GCTTTTTTGGACAAACGGAATCCGACTTTCAAAAATTTACCCTGATGTACTGGGAAAACT
CACCTTATTTATACAGGAAGAAACAAAGTGATCTGGAGGGGGATGCTGTGTTCACTGCAT
TGCATAATGCTTTTGATCTTAGAACACCTGATGCTATCATCGAGTCGTTCATACATGGCC
TTGTTTCCTGCCCTGCTATTGCTTCGGATGAACTCAACATAAATTCCTTTCTCCACGAGG
TTCATGATTCCTTGGGTGCTCCTGTGAAGTATAGGCAAGATGTAAGAGTCGTGAGAACAC
CAGATCAGACCTCAACAGGATCTGGGGTAGAGGAGCATTTCTTCGATGATGGAACGGTCT
TCCCAGATGCAGCTGCATTTGTTGAAAAATGTAAGGGCGCAATCAAGAACGGTTTCTCAA
TCGCCTTGCGCGGCATGGAGTTCCGGTCTGAAAAGATTGCTGCTGTAGCCTCTGCTCTAG
CTGATCTGTTTGGTCAGCCATCTGTAGGGGCCAACATATACTTCTCACCCCCAAGATCTC
AAGGCCTGGCCCGGCACTATGACGACCACTGTGTGCTTGTTTGGCAACTACTTGGATGCA
AGAAGTGGAAGATCTGGCCCAACACAAGGCCAATCTTGCCTAGACTATATGAACCCTTTC
ACTCTTTAGATGGCTTGGTGGATGATAGTGGCGGAAGGGTGGAAGTTCTACACGAAGGAG
ACATAATGTATGTTCCTAGAGGCCATGTGCACGAGGCTCACACTGACCTCGATGAAGGTG
AATCTGAAGTCAATGCGTCCACCAACTACTCGCTCCATTTGACCCTTGCCATCGAAGTTG
AGCCACCCTTTGAGTGAGTATTATTCCTGTTGCAAAAATAAAAGGCATCCCTAGTGGTTC
TGTTTCTCACCATTTATCTACCTTTGTTACAGATGGGAAGGATTTGCGCACATTGCTCTG
CACTGCTGGTTGGAGGAGCAGGAACTTGTGAGGAGCCCTGGATCTGCCAAGTCCAAGGTG
GAAGAACAAGCTCCGTTATTTGCTCTCCTGCTGCACGTGGCCATCAGGTTGCTCTCTGAT
GATGAACCTACTCTCAGGAAGGCGTGCATGGCCACGGCAAAGCTCCCGTCATTGAGCAAC
TCTCTCCGAAGCAGCCATAGATCAATCTTTGCCGATATACTCGACAAGATCGGCAGTAAC
AACAACTTGAAGGATGCGCTGAGGTCGATCGAGCTCGCGGTCAAGGCGAGGAACGACGAG
CCCTTCCAGTGGATGTCCTGGCTCCGACATCTCCCGCAGCAGCACGGTCGCAGGAGGATC
GACTTCAGCGACGTCCTGGGTCGTTTGGAGGAGCTTATCGACATGTTCAGCTCCGACAGG
GAGCGAGCCTCGTCCGACTTTGCTGACTTCAGGTCGAGCTTCTGTGGGTGCGCCGTGTAC
GACGATGCTCGCCGTGAGTTCGAGGCGCTGCTCGTCATGTACAGGACGGCCCGGACGCGG
TACGCCAAGGGCATGCTGGCGTTGCACGGGAAGCACGGAGGGTAGCTAGCTGCTCCCGAG
TTCCCCCATTTTTGCCGAACAGTTTTCATGTACACACGCTGCGAACGGCGTCCGTTGCAG
CGCTGGTTGTTTCGTCGGTCGTGCAACCTGGACTAGTGTTTGGTGTCCACTTTTGCCGTG
CTACGATGTACTAGGATAAAACCACCTTCTACTGTGGTTGCACAAGAACGCAGAGCCAAA
AATTTTTACAGAGCCCATGTGTGCTGCTGCTGGGCGCTGTCACAGCGCCACTGCTAGTCC
GTCTGTCCCCGGCACCGGGCAGCTCGACTGGGAGTGGAGGTGGACCAAGCTATGACAGGC
CACCGTCCCAAAAAACATGCAGCATCTGACAAAGGGGACGAAGGGATGACTGTCCATCCA
TCCATCATCCTATACGGCTACCCCAATTATTGCCCCCGGGGTCAATGAGACACGTCGCGC
AGCACATAGTTTGCTTGCGTTGCAGTGCTGGTCTTGCCGCGCTCGTTGGCCGTCTGGTTT
TGGTTGGAGAGGTCGCCTCTCGCCTGGCTGGGCTTGGTATGGCGGGAGACGGACGTGACA
AGGAGAGGCAGCCGCATCTTTCATTTCATATCCAGAGCCGGAGGGGAGGGGAAGGAACAA
GGAACACATTGTAAAGTCTATCCGAGATGTGTGTGTGTGCCTTGTTTGGGCAGACGGCGC
TTGGTTTCTGGCCTGGTTTGCCTCCGTTGCAGCTGCAAGGGGCGCCTCAAATCTCGTCCA
CCCAGAGCCCTATCGCCTAATCAAGAGCCAGATGCCACTGCCCGCCCCGCGGCCACTAGA
ATCTCCCCCCGCAATCTAAAATACTTATACCACCCACCCCCCGCTTCCATAAATATTATT
TCCAGCGCGATCTCACAGGTCGCCCCTCTCCTCCCTCGCCCCCTCGCCTCGCTCCTCTCG
CCCGCGTCGCTGTCTCTGGTGAGTACGGAGTTCTCCATGCAATGCTTCTTCCATTCTCTG
TTGCATTCGATCGGCGGCAATGGCCCTGCTTGCTTTGCTTTGCTTTGCTGCGACTGATCA
CGGGCTATCTCTCTTGCTGCAGGTTTCGGGGCGGCGGAGTCGCTGTAAGTAAGTAAGTAG
GTACGTAGAGACGACGATGGCGCAGGCGGTGGTGCCGGCGATGCAGTGCCAGGTGGGGGT
GAGGGGCAGGACGGCCGTCCCGGCGAGGCAGCCCGCGGGCAGGGTGTGGGGCGTCAGGAG
GGCCGCCCGCGCCACCTCCGGGTTCAAGGTGCTGGCGCTCGGCCCGGAAACCACCGGGGT
CATCCAGAGGATGCAGCAGCTGCTCGACATGGACACCACGCCCTTCACCGACAAGATCAT
CGCCGAGTACATCTGGTACGCCCGCCGTTGTTTCCGAGTCATATTAGCAGCTTAGGATAG
GCCAAACCTGCACTTTTAGGGGATTGCACTAGGTTTGATTAGATTAGCACGTGAGCGAGC
ACTGCAGTGTGGATTTGCGCCCTTAAAGTGGATATACACTGCTAATAATAGATAAAGCTT
CCAAAGGCGTGATGGGTGATTAGTGATTAGTGACGACTCACTGCTTTTGCCTTTGTAGTT
CCGGCACTTGAATAAGATTTTGGGCAGTGGACACCCCACTTTTGGGGTGCAACCAGGAAT
AGATCCTGTCATGTCATGGCACGTACCACTATCATGTAGTCGCATTACTATTAATTAACA
AATCTGACTTTCTTTCTTCACACTGTGCAGGGTTGGAGGATCTGGAATTGACCTCAGAAG
CAAATCAAGGGTAAGATCTTCATGGCCATATCGCTGTTTCCTTCCATACATACTACTACA
TCACACTTGTCTCTGGAGTTGACTGCAGAGCATTGTTTCTGTACTTTCTATTTCTGCCAC
TGACAAGAAAATGCAATGCTACTGTTTCAGACGATTTCGAAGCCAGTGGAGGACCCGTCA
GAGCTGCCGAAATGGAACTACGACGGATCGAGCACGGGGCAGGCTCCTGGGGAAGACAGT
GAAGTCATCCTATAGTAAGGGGACAATTACAGTTCATGTGTTCTTCAGCCTTGCACACAC
AGTCTAATACCGTAATCTCGATATCGACTTTGGCTGACTCTGTTCATGTTTTTCTGTCCT
GCTTTCAGCCCACAGGCCATATTCAAGGACCCATTCCGAGGAGGCAACAACATACTGGTA
CCTTTCTTCTGGATGTGCTTTATGCTAATCATGAAGAAGTGATTAGTAGTGCTAGTGGTC
ACTTTACTGGTTACACATATACAATTGGCGTGTTAGTTAATACGGAATTTGTTTTTTCAG
GTTATCTGTGACACCTACACACCACAGGGGGAACCCATCCCTACTAACAAACGCCACATG
GCTGCACAAATCTTCAGTGACCCCAAGGTCACTTCACAAGTGCCATGGTAACTACGCATC
GAGTACCCGTGCTATATAAAATCCTGCTATTTTCTGATCTCGCTTTTGTTTGCATACGAA
ACTGAAACATTTGCTTTTCTAGGTTCGGAATCGAACAGGAGTACACTCTGATGCAGAGGG
ATGTGAACTGGCCTCTTGGCTGGCCTGTTGGAGGGTACCCTGGCCCCCAGGTACTGCATC
GAGAAGCTTGATTTATCAGATGACGATAAACCTTAGGCTGACTGAAATGTACACTTCATT
GAACAACAACCAAGTAGTAATATTTGTGCTCAAATGTTGCAGGGTCCATACTACTGCGCC
GTAGGATCAGACAAGTCATTTGGCCGTGACATATCAGATGCTCACTACAAGGCGTGCCTT
TACGCTGGAATTGAAATCAGTGGAACAAACGGGGAGGTCATGCCTGGTCAGGTAAGCCTC
CGTATTTATATGCGTGCATGTATGCTTGTTATGTGTGAATATGTGTGATGTTTGCGACCT
CTTCTTTCTTTCAAAGGAAAATCGAACTGTTTAATAAGTGAAAATTCACAACCTGTATTC
ATGCAGTGGGAGTACCAGGTTGGACCCAGCGTTGGTATTGATGCAGGAGACCACATATGG
GCTTCCAGATACATTCTCGAGGTACTTCGAACAACTATCCATGGTTCCCTGATGGCCTGA
TACCACAGAGCTTTTGTTATTTGCTTTTAGTTAGCTTAGTATGGCTAATAAGTCAACTTT
CTTTGTTACATTATTGTAAACCTGATAGGTGCATGTGCTATGAGCTTATGATTTATTCTG
ACACTTTGAAGAATGCCATTCTTAAATACCATAAAAACAGTTTTCGCTAAAACATCAGAA
CCCATAAATCCATAACTGACCAGGTGACCATCCTTTGTGATATTAATTTTCTCATTAATA
AGCATTTCTAATTAACATCCTACTCACTGTAATCAGAGAATCACGGAGCAAGCTGGTGTG
GTGCTCACCCTTGACCCAAAACCAATCCAGGTATATTTCTGTAAGTTGTTTGATGAAGCA
ATTTATATATTAGAAGTTCGCAGTCTGAAGATTTATCTGATGTAGGGTGACTGGAACGGA
GCTGGCTGCCACACAAACTACAGGTTCCATTCTGTTATGTTAATATTTGTTCATCGTGCG
TAACTTTTATAAAGTATATCTTGTCGTTTTCTTTTGAGAAACATATATCTTGCCGCATGT
ATATATTGAAAAAAAGCATCAGAAAACCTATTGCAGCTGACTAGCTGTGTTAGAGTAAAT
ACTAAGGAAAAATATTCTTCGAAATGCAATGTTTCAAACAGGGCATGGATGTTCAGTGCT
GGTTATTTTAAAATTACTATAAATGTTATTCCGAATAGACATGTATTTTCTATAGTTAGT
TACTAACGGTTTAAGTAGTTTTCTCATTACTCGATAGAGTATCACCTTAAATTGCAAGTG
AAAAACTGTGTTTTCTTCTTGTGGTAAATGTAGCACATTGAGCATGCGCGAGGATGGAGG
TTTCGACGTGATCAAGAAGGCAATCCTGAACCTTTCACTTCGCCATGACTTGCACATAGC
CGCATATGGTGAAGGAAACGAGCGGAGGTTGACAGGGCTACACGAGACAGCTAGCATATC
AGACTTCTCATGGGTATGGGTGGAGCAAACCTTTTCTTTCTTTTTTATTTGTATTTTCCT
TCCTATTTATTTACAAGTTATACTGATCACAACACTTTGTTTATCAGGGTGTGGCGAACC
GTGGCTGCTCTATTCGTGTGGGGCGAGACACCGAGGCGAAGGGCAAAGGTATGTGCTCTC
CCTTGTTCTGCAACCCTACTTGCAATGGTTGGGAATGCAGAAAAAGAACTATGATGTCCC
AATTAAAATTCAAATAAAATTATGACAACCCAAATAAAATTCAAATAAACCTCTTGCCTA
TGTATATCGGTACTACGTGTCGTAGCTTGGTAATCTGCAATTTCAACTGAAAACAATGCC
TTGTTGCCCAACAGGATACCTGGAGGACCGTCGCCCGGCCTCCAACATGGACCCGTACAC
CGTGACGGCGCTGCTGGCCGAGACCACGATCCTGTGGGAGCCGACCCTTGAGGCGGAGGC
CCTCGCTGCCAAGAAGCTGGCGCTGAAGGTATGAAGGACCTGAAAAAAGGACGGATTCTT
CTTCCGGGGAAAAGAAAATAAATCGGCGGGCGGCGAGACCGTTGGCCGTCCATTCTTGTT
GATCCTGTGGTTCCGTCGGGGCACTGCCTGTACAAAATCCTCACAGTTTGTAGAACCACT
CCCGCGTGTTTTTTCCGCTTGAACTGAGTCCATTTGATCTGTTGGGTCTGTACACTCGCT
GTACCTGAGTCCATTTGGAGAACTACGTTATTATAAAAGGATAATGAATCGCACAGAGGA
TTCCCCCCCCCCCCCCCCCCCCCCCGCCCTCCCCTTCCTCCCCCTCTCCC