Map Locations of contig_38834 (9155 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38834

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54042 2 1018 bp MLOC_54042.1 Available Available LOC_Os03g53100.1, FRAME:-3, EVALUE:7e-35, 13103.m05794 protein response regulator receiver domain containing protein, expressed
MLOC_54041 1 703 bp MLOC_54041.1 Available Available None





CDS Structure of MLOC_54042






CDS Structure of MLOC_54041






Contig Sequence (9155 bp)

>contig_38834 9155 assembly3_WGSMorex_rbca.fasta
AACTATGACAACTTGATTTAAAAGCATCAATAAGCTTTGTGCGAAATCACATTAAAAAAT
GTCAATTAAGTTATTTTTTCAGGCAAGTATGTGGTTAATAATATAGAAAGTGAGTCAAAA
AATGTGGCAACTATGAAGAGAAAAAAATAGTTGACGGACCATGTCGACATGGGATCTAGT
TTCNNAGAACTCGTCGCGAGAAAGTCAATGATGAAAACGGATCATCGATTGAATTAACGA
TTTTGTAGATAAAACTTTTTAAATTTCAAACATCAAAGAAAATCTTGATGACATCATTGC
ATGCATGTATGTTGGAGAGAGGATGAATTAGCCGGTGCATGTCAATACATAAGTCAAGAA
GATGCATGTGATGATGTGCATGCAGTTTATAGGTCCCTTTGTTTTTCTTTTACCGTGTTT
GTGCATGCATATAGCAGCCGCCGCACCGGAATAAATGGGTGCCTGCGAGACGGTAGCTCG
TGTCGCGATCGCAATAGGCGATTGCCCTCGACACAGCACCCAAAGCCCTCGCCGCTCCCG
TCATGCAGTAAGGCACAAGGCAAACACCATCCTGCCCTAAGTTTGCGAGCCGATGACGCA
CTCCACCTCCTCCTCCGGTTCCTCTTCCTCCATCGTCGCCGGCGACGTGAGCGGCTACCA
CGTGCTGAAGATCGTCGGCTACTCGCGCACCAAGGAAGTCCCCAACGGCAAGCAGATTGA
ATCTTGCCCTTTCCGGGTGGGCGGCCGCACGTGGCGTCTGCGTTACTGTCCCAACGGGTG
GAAGCCCGACAGCACGGACTACATATCCCTCTTTCTCTGCTTGGATGATACCGTCACCGG
CACCGAACCCGTCAATGCACAATTTAGTTTCAGTTTACTCGAGCAAGATGGAAATCAGGT
GCCTTCCTACTGTACCATCAAGAATAATTCCGAAGCATCTCCTGCCCGCGACTTCGCTGT
AGGTAAATCTTGGGGACACCATAATTTCATCAAAAGGGGGGAGTTGGAGAAATCAAAGCA
TCTCAAAGACGATTCCTTCACTGTCAAGGTCGACATTACCGTGAGAGGGTTCTACAAGCA
GGAGACACCATCCATCGTGGTGCCACCATCTGACATGCATCGGCACTTCGGAGATCTCCT
GTCGACCAAGGAGGGCGCCGACGTTGAATTCCGAGTCGGTGGGGAGACGTTCTGGGCGCA
CCGGTACGTGCTCGCGGCACGCTCTCCAGTTTTCAGAGCAGAGCTGTTTGGTTCGATGAA
GGAGGGCACCACCAAAAATGCCATACACATAGATGACATGGAAGCAGAGGTGTTCAGCAA
TTTGCTTATTTTCATCTACACTGATGATGTACCGCCTGATACAAGTCAACTAGATGAGTA
TGCCATGGCTCAGCATTTGCTTGTTGCAGCAGACAGGTACGGTTTGGAGAGGCTCATGCT
GATCTGTGAAGATAAGCTGTGCAATAGTATCGATACGAGCTCCGTGACGACCATCTTGGC
ACTGGCAGAGCAGCACCACTGCCATGGGCTTAAGAAGGCATGCTTGGTGTTCTTGGGCTC
TCTGACGAATCTGAATGCCGTCAGGGAGTCTGAGGGGTTTGACTACTTAACCAAGACAAT
GAAGGATCTCCTCATATCCAAGGTTATTGCTGGTTAATTTGGGAGATGAAAGTCAAAGGC
ATGGACATGAGGTTTCAGTGCATGCATGTCATTTGCAATCACATGCCCAAAAAGATACGT
ACTACTCCCTCCGTCCTAAAATTCTTGTCTTAACTTTGTTTAGAAATGGATGTATCTAAN
NNNNNNNNNNNNNNTAGATACATTCATATCTAAACAAATCCAAGACAAGAATTTTGAGAT
GGAGGGACTACTAAAGATCGCATGCTATCTAATACTAGTATTAGTACTTCGAGTCTTTTT
CTCATTATTAGTATGCTTCTCGGCCTCTTTTTCTGTCTGGTCACTGTGTCATTTGTGTAG
AATTATTAGTTGTGCTAATTAGATGAACAGTCACTCCAGAGGTTATAAGCATTCAACTAG
CGCCCCTTTATTTTTCTTTGTTGCTTTGTTCAATTGCAATGTCTTCACAGTACTCCTCCA
GTCCTCCTGACACCTGGTTCAGGCAAACTCTGCTCACTACTTAACGGGCTCTCGCATAAA
CTAGTGTTTCTGTGAAATGCTGTATTTTGGTTTTGCAAAATTTGGTTCATACAGCGAGAA
GTTTTTCGCTTTAAAACTGAGGCTAAGTTTGACAGTGCAACGGAGGCTTATGCTGGCCTG
AACCAATATGTTAAAGTAAAAACTGTACAACCGGAGTCCGAGTTAATTCAAAGAGAGGTG
AGAAAGGAAGGAAAGAGAAAAATGCAATACAACATTGCACTCCAATTCCCTAATCAAGGA
CATACCATCTACTCCTGCATTGGAGCAGCGGTTAAACCAAAGTATCAAATCATCACCGAA
TCTCCGGGTGGTGATGTCGAGTTCCTCATCCTCGTGTGGCAAAATGTTCCAGTGGACCGC
AACGACGACCGTGGAGCGTGGAGCGAGCGAACTTTGGCTCTATTTGGATCCATGGACTAG
AGTTAGTTTGAGCTAGTTTGGGTTCAACTAGCCCTAAAGTATCCAAACATAAGGGTTAGA
TTAGAGCTAGTTGCATCTAACCCACCCAAAAAAACTATCTCACTCAAGAGGTGCTAATTG
AAGCTAGTTCTCATGAGGTTCATTAAAAAATATTTTTCTCTCCCTCTTCCACCAGCCAAG
AGATACTAATTGGAGCTAGTTCTCATGAGGTCCATTAAAAAATCACTTTTCTTTTTTCAT
AAAGTGCATCTATTGTCAATCTAATCCTTCCATCCAAACACATATTTAACTAAAGTTAGT
TTAAGGTTAGTCATGAGCTAGAAACTAACTCTAACCATTAGCAAAGCTAGAGTATCCAAA
CAGGGCCTTTGTTTGTTTGATTGATTGATTGATCAATGTCCTACATGTGTCGTGCCAGTC
AAAGAGGATATTTGCCACTTCCGCAAAAAAAAAAGAGGATATTTGCCGTACTGATGTGGC
TTTTGTTTTTTCTTTCGATGAAAGGGCGAGTACAGATGTGGTACGCCGCCTTGACATGCA
TGGTTTTTTTGTATCACAGATATTAGTGATACATGGGGGGTTTCCATGTAGAATCAGAGA
TGGACACGTAGAACTATTAGTATGTAGAATCAGAGATGGACACGTACATGTACTAACTAC
AAATGGTATGTTCTAACGTACTCAACACGTATACATCTACATTGCCTGGGCAAAGGGATC
CAGATTCGCGTGGCTAAGACGAGTGCTACAGTAGCCTGCCTTAGCCACTGCAAAGCGTCC
GATCAAAAATTGATGTAATGCAGTACTGTAGCCAGGCACTGTAGGATCGATCTAACCGTT
GATCCGAGATCCTATGGCTCACGCGTGACAAAGGCAGCAGCACTGTAGCGTCGCTGTCTC
AGCCACGCATTTTATTACCTCAATCATTTTTTTTATAGTCAAAACGTCATTTTCTTATAG
TCAAAACCTCATTTATTCAGTCATAAACAATCGTTATATTGTTTACAATCAAGAGAATCA
CTCCAACCCGCGGTTGGATGGTTAAGACTGCCCACCAGAGTTCAAGTTCCAGACTTGACG
TTGGTGCTTGTTTTTTTCTGAATTTATTCCAGGTATTCCGGCGAAGTGCTTTCAGTGGAA
GGAGACGTTCCCGTCGATAACGAAGGCGTCAGTGACGACTTGTATGTGAGTGACTTCGAT
TGTACTCTGCTAAAAAAAAAAAAAGAATTGCTCCATCGATCGTGGATTCCAACCAAGTAT
TCGAAGGAGAAAATCTAGCTAGCCTAGCTAGTTCATGATGAACAGTCACTCCAGCGGTTA
TAAGCCTTCAACTAGTTCCCCTTTATTTTTCTTTGTTACTTGGTTCAATTGCAATGTCTT
CACGGTACTCCTCCAGTGCTCATGACATCTGGTTTAGGCAAACTCTGTTCACTACTAGCA
GGCTCGCATAAACTAATGTTTTGATGAAATGCTGGATTTTGGTTCTTGGAAACTTTTGTT
TACAGCAAGAAGTTATTTTTGGCAAAACCTCATTTTTATTACATCAAGTATTCGTAGGAA
AAAATCTATCTAGCCTAGCTAGTTCTTGGAAACTTTTGTTTAGAGCAAGAAGTTAATTTG
GGCAAAACCTCATTTTTTTTCTTTTTTATTACATCAATCATTTTGTATAGTCAAAACCTC
ATTTATTCAGTCACAACAATCGTTACATTGTTTACAATCAAAGAATCACTGCATCGGCCG
TGGATTCCAACCAAGTATTCGGAGGAAAAAATTTAGCTAGCCTAGCTAGTTCATGAGCTA
GCTGATTACTCCCTCTATTACAATGATCGAAGATAACATGATTAAAATCTAAAGACATAA
AATAACATCCATCAAAGACGATAGTGTCCACCGAAGGAGAATATCCATTTTGTATGCCGC
GACCACCTGCACACTGTTTGAGTTGATCTCAGTTTTACTGCAACCGACAGTTCGAGCTAG
ATTCATCCCAAATTCCACAGCAATAGCTTTCACAGTAAATGAGTGAAAGCATATATAAAT
TTTTCCATTTGCCGCCGCAATGAATTTCCTTCATGGTCGCATAAAACAGCCCCAACCGTT
CCAACAAGTCAATCATTATCGAAACCAGCGTCTACATTCAATTTAGTGTAGCCACACCTT
GGTTTCAACCATGCAGCCGATTTCACCTCGGCCTTTGGACGCATCAAAAAAATAATGAAA
TTAACTGTTAAACCTCTCACCGCCAAGTTAATTTGGGCAAATTTCCGAGTCTATTCCCCG
TGGGTCAACTTGCCATATTCAAACCGTAAGTACCATGTAGCAGTAGCCATTGTCTCCTTT
AGCTTGGGAACCCAAGAACTGGGATATCCTGCTCAGGAAGGCAGAACACATGTTTCAAGA
TTGCTTCGCTGGCCCTGTCCACCTACATTGCTCTTTTGATAGTATCATAAATCCCAAGCA
GCTTCCACAATTGGATTACTAAGGTACATTCACACAACAAACACTTGATGTTATCAGGAG
CTAGTTTACACGCATGACAACATGGGTTAATCTTTAGGTGTTTGTTTGCCAAGATTGCGC
AACAGGGAATAGCTCTGTGGAGAGCCCGCGAATATTTTGATATTTGCTGGACAAAGATGG
ATCCAAACATAATCCCAAACATCTGTTGCAAACGAGGATCCTACAGGTTATTGCAGCTTA
ATTCCAAACTGGCTTTCCTATTCCACTTTGTAGGCCGACCGAACAGTAAAACCACCCATT
TTTGTTGGGTTTCAAGCCAAGAAATCTCTCATCTCATGCAGGGCAGTGAGATAGCGAGAA
CTCTTGAGCATCCACATGCCACCTAATCAATTGTTCATCCCAATGTCCTGTTGTAGAGTC
AATTAGATCACTCTAACGGATCCAGCCCAATATGGCAGGGTGGACCAACAGTAGAATTGT
TCATAAAATTTATTTTTTAAATATATATTTTATGTAAGGCTATTGGAAAAATTTAGGGTG
GGCCATGGCCCACCCTGTCCACCCTCTAGCTCCACCACTGCTCACACAAGACAAAATATG
ATTTCCTCTTGGAAAAAAATCATTCATATCACAAGTTCATCCTAAGGAAACAAATGTTTC
TGTTTGCAAAAAGATACTCCTACTTGTATGTTTTGTACTCCCGCTGTTCCAAACTAAGTG
ATGCAAATTTAGTATAAAATTAGTATAAATTTTGTACTAAAGCAACGACACTTATTTTGA
AACGAAGGGAGTATATATCTGAATCGCAAATACGATTCAGAATTGAACTGAAGGTTTTTT
TTAGAAAGAATTGAACTGATTTTTTTTTAAAGATGAACTGAAGTAAACGGGACCACGAAA
TTCAGATATAATAAGCCACAAAGACCCATTGACTGAATCGGCCACCCAATAAGCCCAGCG
GGCCATCATACAAAGCTTCGATTTTTTCTTTTATTTCGATGAGCTTGGGGAGCTTCATTG
ATTCAGCTACAATCTGCCCTGGGGCAACTTACAACAAAAAGGTGGGCACTCCTCGAGGCT
CGAGCCAGCATTCTCAAACCGAAAGTTTACAAGCATACTTGGTACAAAGATCCGCTGAAT
TATTTCCTTCAAACAAAAAAAGAAAAAGATCCGCTGAATTATTAGCAACCCTCGAGACAT
GCTTAGCCGAGAACGAAATAAAACTTGACGACTTCTCCCCTATTTTTCATCATAAAAGGC
TTAGATTTACAAGTCCAAACGATCATTGCTCGGAGTACAATCCACATATTGTTCACTAAT
CCATATATATTTACATGAGCGAAGCAAGGAGTAGCACTAATTAATCCATCTACCGGAAGC
AGGGGAGGGGAGGTAGTGTGGCAGCACCTCATGTTATTTCTTAAAAGGGGGTACCTGTGC
CTCGTCATCTGCAAGAATCAAGCTAAGTACTGTACCAGTTCATGGCCGCTACGCGAGCCC
GAACTTGGAGAGAATGCATCCCAGCTTCTCCTTGGTCAGCGGCTGCATGCATGCGTGCGT
GCATTAGGAAACAGTCAGAGCGAGGGTCATGGGCGTTCGGTACACACATCAGGATCAGGA
GCAAAACACGATTGATCTGGTGGATTGGATGGATCGTCACCTTGGGCATGAAGTCGTCGG
CGCCGGCGGTGATGAAAGCCTGGACGTCCGACGGGAGGCTGTCGCTGGAGACGGCGACGA
TGGGCGTGGTCACCCCCATGGCCCGGATCTGCCTCGTCGCCTGCATGCACGCACGCGCGC
GCGTGGTCGGCGGTGCCACGCCCACACGTACTCGTCAGGCGGCCTGGGCTAATGGCGAGG
CGAACACACGCACACACAAGCCATCTCGATCGAGTGTCTGACCGCGCGTGTATATACCTC
GTGGCCGTCCATGACAGGCATCTGCTTGTCCGTGAGGATGAGGTCGTACGCGCCGGCGCC
GACGCGCTCCCGCACGCGCCGCACCGCTTCGGCGCCGTTCTCCGCTTCGTCGGCCTCCAC
GCCGGCCGCCCTCAGCACCGCTCTCGCCACAACCTGCGCTTCAACATGATCAGCTAAACA
AACATCATGCACACACTACTCGATCGCAAAGCTACTCTCCAGCATGAATAAATCGAGGAA
CAAATTGATATCACGTACCCTGTTGATCTCCTCGTCTTCCACCAGGAGCACTCTGATCCT
CCTCCGATCCATCGATCGTCTTCCTCTGTGTGCGTGTGTGAGAGAGAGAGAGAGAGAGAG
AGGTTTGCTTTTTAAGCGCCGAGTGCCGTCGATGGTTGGATGAATGGATGGACGAGGGCT
GAGGCCGAGAGCACAGAGATGAGATCACGACGGTGTATCTCCCCGACGTTTACATTACAC
GGAGTTGCATGGGTGGTAAATCTGCACGTCATCTGCGGGTGCTTGGCCTCTTTCCGGCAA
GGATCTGTACGATCGTAACCACTGCCGCCCCGCGCCCGGTGTTAACTAGCCCCACGTATG
CTACTTCCTCACGGCCGGCCGGTAACACAATACACGTAGACGTAGGAGTACGTAGCTACT
TACATGCAAGTGAGGACGCGAGCGCGGGATGCAAATGCAACAAGCAATAACAATAATTGC
CAGCCAGCCAGCCCGGTCCATGGGCGCAAGCAAAGGGCGCGCACATGCATGACATGGTTG
CCACGCGAGCAGCGAGCTGTATCGTCTGTGAGCAAACCACTTTGAGCATCGAGGGGTGGT
GGTGACTCGGCTCGCCGAGATCGTTGGTTGGGTATGTGGCTGCTCGCCCGGACTCGTGTA
AGCGGCCGCTAGCATACTGATCATCTAGGCTCGGCAGCGCTCGATCGTGTCCTTCTCTTT
GATTTGTTTTCATTCATTCGAAACGAACACGTGCACTCTATATCTATTAAGTGTCTGCGG
TGACTTCAGCAATAGAAAGCTCTGTCATCTTAATCTTCTGTGAGCTTGTTGTTTAAGTGT
CTGACCCACGGTGGTGAGTGCACGTCCATCATGCTCACCTACCCCCGACTACTGCGAGCG
GCAACATTGTTGTTGGACAAGGCGTCGACCTGTTGGCTATGCAGCTGGGGTTGCTGGCAG
CCTGCCCGATGCTTGCCGCTTGCGGAGTTTCTTCTATGAAAAAAATCAACGAGGGTTAGT
CCTTATGTTGGTCTTATTTTTTGTTGTTGGACAAGACCCATCCTGCATGAGGACAACACG
CTCTTCTTCGAGCGGCCGGAGCACGTCGGCAACCGCTCCATGAGGTTCGAGGAACTCAAG
GACATTGAGGCCATTTGTCATCCGCTATTAATACTTCTTCTCTCACTTCGGAGATTTCTG
CTCGCCCGACAAGTGTTGCTTTGAGGGCGACAACACTAGCATGTGTGCTCGTCGTCGTGG
CGCTCACCTTAATCGTAGTCCCTCCGTCCCATAACATAATAGCGTTTTTATAATATCAAA
AATACTTTATATATTATATGACGGAGGGAGTAATATCTCAGAGTTTTAAGACCACACTTT
GTTGCAATATTAATGGTAATATCTATTTTTGCTTTTCTTTTTATCATGCCATTAAATGCT
TCACGCAAAGTTAAAACCTTTGGGCATTTTCATAAATTCTTTTGTGTCTTCCTTCATTTT
TTATTTAATGCTTTTTGAAATTCTTTTGAAACTTTTCAAAAACCCCCGTTGCCTTTTTCT
ATTTCAAGCTTGGCCACCAAATTTTGCCCATAACTTTCATCTTACTTTCCAAAGCTCTAC
AGAAAAATATCATTTTTTGGGGGGGGGGGGGCGCTCCTAGCTAGGACCTAGACCTAATTC
AAACGTTCAAATAAGTTTGAATTCAAACTTTGCAACCATGTCCCATTCCATTTTCCTGGA
TCACTCATATCTTAATAAGTCTAGGAAAATTGGTCTCATGCACAAACTCATCTCCCAACC
CTCTCTTTCTTTCTTCAAGCTCTCTATTTATTTTTATAAATAGAAAAGGAAGAAACAGAG
GGGGAGAGATAACCAAAGCCAGACCACCTTACCACTCTATTTAGACAGCCCCATTTCTTC
TCTTTACTGCGCGCAGCACCCCCCCCCCCCCCCCC