morexGenes - Barley RNA-seq Database

Contig contig_38829
Source Contig contig_38829
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38829 (8716 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_38829

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54031	2	2939 bp	MLOC_54031.1	Available	Available	LOC_Os03g52860.1, FRAME:-3, EVALUE:0.0, 13103.m05766 protein lipoxygenase, putative, expressed
CDS Structure of MLOC_54031

Contig Sequence (8716 bp)

>contig_38829 8716 assembly3_WGSMorex_rbca.fasta
AGAGAGTGAGCAGTGCGCTGACCCTTTAGGGTTCGCCCCCCGAGGGGTGAGGCGGCGATA
GGTGGCGTGGGGCGGCGGGCAGGGTGGTGGAGGCGCCCTAGGGTTGGGCTTTGAGGCCCA
AAGTGGCCTCCAACGCCTAGGGTTTGCCCCCCTCCACCCCTTGTTGCGCCTTGGGCTGCT
TGTGGTAGCGCACCAGCCCACATATGGACATGTTCCATGCTACGATAGCTAACTAGAGGG
TGTCGGTCAGCTGAGCAAGATCACACAGTCCATGCTACGATAGCTAACTAGAGTTTATGA
AGGATTTTCTGTTCTTTCTTTCTGTGATAGATGGACCCCCATGACATCAACATTGACCAT
TAGTTAAAGAGTTTCTTACGTCCAACGGTGGAGGATCTTTTAGGCAGGCGTAGACAAAGA
GGCGTAGAAAAAGAACGTAACCCATGCAAACCAAGTACTAGTGGAGTATCTTTTAGGCAG
GCGTAGACAAAGTAGGATTTTTTTTCTGTTCTTTCTTCCTGTGATAGATGGACCCCCATA
ACAGCAACATTGACCATTTCACTTAAACGTTATCCCATTCCACGTGGCTCTGACTAATGG
GTTCTGCTGTCAGTTTTTTTGTGTCAAAACATGGTCAAACGTCGTTTTTAGTGCTTTCTG
CAAACAATTATTCAGAATCGGTGTTTTTAGCAAACCTTTTATAAAAAAATGTATTTTTCA
GCACTGAGCGACGTAATTATGCTAGTTTTTGACAATTTACCCAGTACTATTCCTACTTTA
TCTACGCCTGCCTAAAAGATACTCCACTAGCACTTGTTTTGCAAGCGCACACGGCCATGT
TTGTTGATTAGCACCGCACAGAAAACGCTCGCTGATCCACACTACTAAACTAAAGTAGTA
TGAATGATCTCAAAAAGACTAGCAGCCGAGCCTCAGGTGGATGGGACAGAAAACACAAGC
CGCACTACAAGATGTTCAGATTGCGACGCGCATGGCTAATTGTGTGTCCACTACTGTTAA
TTCAAGCTCAGGCTGAGCATCTACTAAATCAACAGAGACAGCCGATGAGAAGGATAATGG
CCCTCTCTTTTTTAAAAATGCCACTCTTCCCCTTTTGGGCGGGCCATGGAGTTGGTTTCG
TGCAAGCAGTGCCCGTCTTGACCTTGGTTAGAAGCCTCGAGCAAGTGTCAAGTCATCACT
CCTATGTAAAACCCATCTTTTTTGTACACGGCTTTGTCAAGAAAAACAAGAATGAAAAAC
TCGCCTACCTTTGCCCACCGGAATTTGGGGGCTGGTGTTAATTAAAGCTAAAAGGCTGGA
TGGAGATTGTTTCAGAGAACACGTGGGGACATAAAAATGACTGACATAACACAACTATTA
CAGTCCGTCCTTAATCATTGCGGTTCATCTCCTATCAGCCGTCAAGCCCATCCATCCTCT
CCAAAATGTGTCGGCATTATTAGCCATCTCCTCACATCGGCATCGTTATTGTCATCGTTG
TCATCATCATCATCGGCATCGGCATCCCGACGCATTATAAATTGCAATAATTCATTTTAG
CAAACACTGATTTGGTGAATTATTGATCCCGCACTGTCAGCACAGGATCCGTTGGGCTGC
CAAGACGGAGATAATTAGGAGCACAAGGGACAAACACGACGCGCCTCCTTTTGTTAATTA
AATTCAGCATGGGCATGTTGCTCGATCGAGTGTTTGAGATGCGGTGACCAACTACAGCTT
CTTCACCTCTCGCACGTCCTTCTTGTTGCTGCTAAACAGTGTTGCCTCTCGCTGAACTGA
CTGGCCAACAACCCCTTTGTACCATCCAGATCCAGATTCCTCTCACAATACTCCTGCAAA
AGTTACTCCATGTTGTGCGTTTGATTTGATTTCCCCCTGACAAGTTGGCATATGTTCCCG
GCTCGGTTTCCACATGGCAATGAAGTGTATGTTACAGATGTAGGACATGCTCAGTCCCTT
AGCTCATGCAGCTTCTCCACTGATCAGTGAACATGGACACGCCAATTGATGCATGTAACT
AAATCATTAGGGGTTCAAAAAGTCTCGCTATCACAATGTGCAATCATATTCACGTGACTC
TGCATGTCGTATACGGTGAGGTGTTGGTTCGACGATCGTCTGTGATAGGGTCGGAGTCAC
TTGCTCCGGATTCAAGATGGCAACAGGAGAAGTGATGCCGGCGCCCGGCGCCCGTGAGCT
ATATCGATGGGGGTCTCCGTGAAGAGTGTTTCATATGTGCTGCTGCGATTGTGGTAGTTT
CTGTTAATTAAGTGAGCAATTCGTTCCGCTTAAAAACGGATGGGGCATTTCTTTTCATCC
ATTTCAAACAATAGTAAATGCCATGACTGACACAATTCCAGTGGAAGCAAATCTGCTTTA
TTTATTCGGCTTAAAGAGCAACTGCTGACATAGTACTGTCACAGACACACACTACACCAA
TCTCTCGACAAGTTTCGTACGTGGCGAACGCCCTTTATTCATCCATGGTTGCCGATGGCT
TAGATTAGATGGAGATGCTGTTGGGGATGCCCTTGGCGGTAAGCCCGGCAGCGGCGCCCT
TGTGGTCGGAGGTGTTGGGGTAGAGCAGCATGTAGGGAAACTTAGCCGGGCCGTTGCGGT
TCTTGAGCTCCGGGTCATGGTTCATGCCCACCACCTTGCTCTCGATCTCCACCAGCCGGT
CGCTGAACCGCTTGAACACCTCCAGGGCCTTTGGGTCCGAGGTCCACTCCGGCGTGTCCC
GCTGCCCGAGGTACAGCTCGTCGGAGGAGTGCTTCGACAGCACCTCCAGCAGCGACACGC
CGATGATGGTCTGGATCTGGCTCGTGATGGTGTGGATGAAGGCCCGCTCCGGGTCGCGCT
CCAGCTCCGCGTACTCCTCCGTGCCGGGCTCCGGCATGCGGCGCCGGCTCACCGTCGGCC
GGTTCGGGAGGAACCCCGCGTAGGGGTACTGCCCGAAGTTGACTGCCGCATGCAGCGCCG
ACCCGATCCAGATGATGGTGGTGCACGCCTTGGCCAGCTCCGGCACACTTTGCATCTTGG
GCCACCATGGGGCGTCCTTGAGGTCGCCGTGCCCGACCTCGCGCGTCTCCTTCCACCACG
CCTGCACCTCCGTATCGCCCTGCAGCACGCCGTCGTTCGGGTAGTAGATGGCCAGGTACT
CGCTCACGTACTGCTCAATGGCGTGCCAGATCGCCAGCCCGTCCGCCGCGTACGGGTAGT
CCGACACCAGCAACCGCACCTTGTACGGGCTCGACGGGTCCTCCACCGCCATGCCCCTGC
ATTTTTTTTACCACGTTCCTGTCAGTGAGCGAGACGCCCAATTTGTTTTACACATTCATA
ACATTTACCAGGTACGTACCTCTTGATGAGATCGTCCGGCAGTCCCTGCTCGGTGAACTT
CCAGTCCTTGTACACCACGGCCGACATCCCCAACGCGAACTTGCCCGGGAACACCGTCAT
CTCGAAGATGCCGCCGGCGTTGATGAGCGTCTGCCGCGCCAGCGCGTTGATGGTCATGGT
GTCGCGGTAGTGCGGGCTCAGCAGCTTGTGCACCGGGTGCGTCACGCTAAGGTGCCGGTT
CGTCGAGATCACGAACGGCTCCATCACCGCGTGAGTGTTCAGCCTGCGCGTTTCAATCAA
TCATATTTCGATCAGTTGTTGTGCATCGACTGACTGAATCACATCGACCGTGGAGAACGT
ACCAGTGGCTGACGAGCTGGTGCCACCCGGAGTCATTGACGGCGACGTAGGCCTTGGCGA
GCTCCCACACCCAGCCTTCGACGGAGCCGCTGGGCACCGGCGTGTAAACCTTGCTCTTGG
CCGTGGTAAGGCCGCCCTGGATGATGGGCTCGCTCAGCTCGATGGCGAGCGGCGTGAGCC
TGCCGTCGCCGCGCAGGAAGAAGAGGGTCCTCGTGGCGTAGATGAAGTTGCCGGGCAGGT
TGTTGACGTCGATCAGGAACGGCATGAACCGGTCATGGTGATCAAGGATGTACAGCCTGT
TGCTTTCCAGCGCCTGCAAATTTCAAACCCAATACGATCACTTGATCGGCCAGCATCAAA
TTAATTGCAACGAAGCCAAATTATCTACAGCTACCAATTACTCCTAGGTAAATCATAGTT
GATGTCGATGGCTTGGACCAATTACCTGCTGCACCGTGAGGCCCTCGAGGTTCTTCTCTA
TGTGCTCCGCCGTGATGGTGCTGGTGTGGTCACCAAACTTGCTAGGGTCCAGACTACTTT
TTGGCGGGAACTCCTGCATGCATGCAGCATGCGTGCATGCGACCCAACGCAAATCAAGAT
CTGCACTTTCTCACCATGGACACCATACACACACAATGAACAAATAATCGCTGACTCACC
GTGAGACGCGTGATCATGACCGGGTTGACGCCGGCGAGCACCTCCCGTGCGAACTCCTCG
TCGGTCCTCCACGCCTGCTTGTTCTCCTGGATGATGTGGGGCACGGGGAGCTTAAGCAGG
GAGTCGCCGCCGACGGGGAGGAGGTCCTTGATGAGCTGGAGCGGGAACTGCTTACGGAGC
TCCTCCAGGGCGGCCACCTTGGGCAGCTTGATGCCGCCCTCATAGAGGTTGATGATGTCC
TGGAAGGAGTCGAACTCGCCGGGGGTGGTGTCCACGTAGGTGCGCACGGCCGGCAGGATG
CCCTGCGTGATGGCCTTGATGGAGTAGCCCAGGAAGTCGGACGTCTTGAGGTGGCCGAAC
TTCTCGTCCCGCGGCACGTAGATCTGCTCCAGCAGCGACAGCCGGCTCTCCAGGCTCGGG
TCGCTGGCGTTGGGCTTGCGCTCCGTGCGGCCGCGGCGCGGGTAAGGGTGGTCGGAGTTG
CCGCCGAGGATGGGGCGGCCCTCGCCGAGGTCGTTGTAGACGTCGTAGCGGTAGATGCGG
TCGTGCTCCTGGTACGGGCCCTGCTGGTCGTCGCCACGCAGGTTCCGGAGCTCGTCGTCG
CGGTACGGCTTCAGCGCCGCCGGCATCTGGCTCGGCAGGTACGTCTGCGAGTGTGGAGCC
GTGCAACATTACTATTAAAAAGTTATGTTTTACTCCCTCCGTTGCAAAATATACGATCTT
TTAAAGATTTTATTATAGACTACATAATGAATGCATAGAGAGATCCACTGATTTTGTTTC
GTATGTTGTCCATAGTGAAATCTTACAAATGTCTTATATTTAGGAATGAAGAAAGGTTTA
GATGTAAGATAAATATTGCATATCTAAATACTATATCATTGATCTTACGTCGAGATATGT
GAGTATTTTTTTCCTTTTCTTTTTATGCTTAATTTAATCGTTTTGGTATGCAATAATTAT
GTGACATGCATCTAGATGTGGCTAGACACATCCTTAAAAAGTTTATTCATGAAAACAATC
ATGTGGGTGGATCCGTGCAACAGTTATTTTCACCTACCACGCTGCCACGGTGCCACGGTG
CAACTTTCATTCAATCTTGTGTCGATCTGCACCAAACCATATCCTTTTCTACCAACACGG
AATAAATAATGTACGTACTGCTAAGTGGTAACCACTCCTAGCTCATCATCTATTGTCCTG
GCAAGACTTAATGATCGACCATGAATGACGAAGGCGGTGAAAATGAAAGGAGAGGAAAGT
AGAGGAAAATCCACGCACGTCGTTGGCGAAGAAGACGCGGCTGTATCGGTAGTTGGCGGC
GGGGTAGATCCATGAGTTGGCGACGAAGGTGAGGTTGCCGCTGCGGCCGGGGACGTCGTG
GAGGGTGATGGTTTTAAGCAGGAACTCGGAGCTGTGGTAGTTGTTGACGACGATGGCGCC
CGGCACCCCGAGCTTCTCCACCTCCCAGTCGAAGGTGAGGCCGAACTTGGACTCCCCCGT
CGTCAGCGACGGCAGGCTCGTCACCCACTGCTCCAGCTCCGCCTCCGCGCCCACCTTCCC
GCGACCGCCGTTGTCTGCACCACCACGTACCTTCTCATATCACATGCTTAGTTTACTTAC
AAGAACTATACATGCCACGTACCCTGCTTGATTAATTGTTGGGCAAAGAGCAACGCCCGG
TGATTTAATTTTTCATGGCTACTACTTCCTTCCTTCTCTCTCTCTTCCAGCGTTGTTTTT
GATGACAACTGTTTATAGCCTGCTGATTGTGTGCTTGCTCTTACGTCTTTGTGCTTTAGT
TTAGGTTTGTGTTGCTTTTGACGTGCCGTCCTTGCTTGTTGTGTTGCTTTTGACGTGTCG
TCCTTGCTTGTTGTGTTGCTTTGTCTCGAGCATCCGGTGCTCTGCGTGGTCTGGTGCGCG
CACCATGCATGCATGCTGTTGTCTCTTTTTTCGATGGCATATGCCCATGCTCAGGTAAAG
ACGACCGGCCAGGGCTAGCTATCCTATCTTCTTTAGCCGATCCAGACACATCCATCCATC
CATGGCCGCCGGCCCACACGAAAGAAATACTATATCTTGTAAACAGAGGAGAAGGCCGGA
GGAGGGTAGTGATTACCTTGGTCGACGGCGGTGGAGCTGATAAGCTGGCAGGTGACGCCC
TTGCCGAGGAACTCGCCGATGCCGTCGATGATGGTGGCGCCGAAGTCGTTGAGGTCCAGC
ACGTTCTTGCGCATGAGCACCACCGTGCCCTTGAGCCGGGCGCTCTTGTTCGCCCCCGTG
AGGGTGTCGATCAGCCCTCCCAGCAGCATCTTGTTCTTGGCCTCCTCTCCTCGCTTTCAC
TGCTCCAACCAATGGCACCAGCACACTGTTTTTCACTTTTCAGTGAAGATGGATGTGTGT
TGCGTGAGTGTGTGTGAGGAGCTGCTTGCAGCTCGGTCCGGGCAATTTATAGGCCGGTCC
GGGTCCGGTCCCGGTGGTGTGGCGCTCGGCTTTGGAGAGATGGATCGGACGGCGACGTGC
TCTCCACGTGCTGCGCGCGGACGGTGACGTGCCCTCCTCGTGCTTCGCATGGCGCGCTCC
GGTCCCGTGACGGGTGATCGCCCATCGAGCGGTGCTTGGCTGCACTGCATGTGCATGTGC
ATGTGCATGTGCATGCATGGGGCTGAATGAGCGTTTTGTAGTGTGTAGCCGTCACATGAC
TTCATTCATGAGGATTGCTACTCCATGCATGGCAGGCAGCGTCTACCTCCAATCTTTTCT
TCTTCTTTTCTTTTAAGAACACTTGCGCTCCGTTTAATTAGATGTTTACATTCACGCCTG
ATATTGAGTATTGGCATTCATCTTCTTGACTACCACCGTTTGGATGACTTTAAAATTCAA
CCGTGGCATTCAGGCTCGATATCGAGCGACCCGCAATTCGAAGGGCGTGCGCTCGACATC
GTTAGGTATTGAAAATCAGCGTCCTGCCTTTCATCCCCGCTCAAGACAAAAGATCTCTCA
CCTGCGTGTGGCTAAGGAACGACGGCAGCGGCATAGGTAGCCCATCCCCCCACCTCCACC
CAGGCTCCGGTGGCCGGCGTCCCTCAACCCCGAGCTTCGGCGCGAGATCCGACGGTCGAA
GGAACTCCCTCCTGCCCAGCATCCAGCTCGAGATCCGGTGGTCGATGGCCCTTCCTCCCG
CTCTGCCTCCAACCCGAGATCCGGCGGCCGACGACCCACCACCCCAAGCTTCGACGGCCC
GCACCACCCTCCCACACCGTCTCCCTCCTGAGATCCAGCGGTCGGCGGCACCCTTTCGCC
CAGCCTCCACCGCGAGATCCAGCGACCGGCCTGCTCCCCTCTTCCCTGTTCGGTCTCCTC
TTTGCTTGATGTCTTGGAAAAGTCTCATTCAACCTAATTCCTCACTTTGACCATCCAAAT
AGAATTTAGCATTCAACCTCAATATGAAATCGTCTTCCGGATACCAAAACATCCAAACAG
GAATATTGGCATTCAATCTCAATACCAATACAAGGTGATATTTGTATTCAATCCAATGCA
ATGCCAAGACTCTCAATGCAAACATCCAAACGGAGCGTTGGGGTAGGACCCCCAGCCTCA
AATTGATCTCATGTAATGAACATTCTCATCCAGTCCACCTTGAATCTTCCAACTAAGCAG
CAAGGTGTGCGCGTAATCAGATATTGCAGGACTTGCGCCTTGCAGACGACGGAGGAAAGT
CACGAGAACTTTCTGTGTTTTTCTAGGGAAAATGTGAATATGTGGATGCATGTGAGTTAA
ACAAGCAAACGAACCAGCTTAACTGCGTTCATTCTCCAAGGACCGTCTCATCTCGTTTGC
TTTGCTTGATCACTTGTTTGTGCTGCAATTATTTTTTACTCGTTATCCTCGTCATCTACT
TTCCTCAGTGATTTGTATTACTCGTTATACTCGTGCACCAAATGCTTATTATCTTTTGGC
TTTCATGAATGGTTAGCGTCAGTCCTTCTGCTGGCTTCTGGAATAAGTTGACCTTTAGCT
TTTTAAAATATAAATTTTTTGTTGGATTTTTAGAATAAGCTTGATAGAGGACACTTTATT
CTATTCTAGAAGCCCCCACAAAACGCCCAAAAATCTAGCCCTTGGTGTTATTCCGCACAT
ATCATTATATCAACAAAAAGAACTTTAGACAGCTGTAGTGTTAATCAGCTAGTTCCCCAC
GGGGAATAGTTGATCTAAGTGCCAAAATCTTGTCAAATGAACATAAAAAGTATGTGAGGA
GAGCCTGCAAGATTCCATATATGCAACCAAAATTTGGACAGCCAACCAACCAATAGCCAA
AATGTCAAAATTTCGG