Map Locations of contig_38807 (7715 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38807

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53998 4 3373 bp MLOC_53998.2 Available Available LOC_Os03g18350.1, FRAME:-3, EVALUE:0.0, 13103.m02198 protein importin subunit beta, putative, expressed





CDS Structure of MLOC_53998






Contig Sequence (7715 bp)

>contig_38807 7715 assembly3_WGSMorex_rbca.fasta
TTTTCAGAATTTTTTGAAACATTAAAATACAAATTTTCACTGAATTTAAAGTTTGAATTT
AAATGCCTTCAGTGAGCTCGGGAGCCAAAAGCAATATTAACAGAATCCTTTTGGAGGACT
CAGTATGTAGCTGTACGACTTGGATGGATCCCCAAGGCTCTGTTTGGAACGTCGTTTCAA
CTTTAAATACCTTTGTAAAAAATACAGGCCATCATCTATCGTTTTTGTTTTCACCCAAAA
ATCCCTCTTGACCGGTATGTTACACCCGTAAGAAAAATACATCTGTTTGTTTACACCGAT
TCCAAGCACGGCACAAAGGGGTACTTTTACATCTATTCTACAGAACCAGAGCATGATACA
ATCAAACCCAATGTCTGATGTGAACAACTGGAGTAGCTGCGCGTGGACTTCCGCAAACAA
GATAAAAACAAAAGCATCGGTATATCCACTAATCAGCTGGAGTAATAGGGTGAGTGTAAC
AGTTCCACACCATCAGCGACAACTTTACTGACGAGCAATGGTGCCAACAAGACACAGATG
CTGCAACTACAATCGACTCACATGGACACCTGACCAAAATGCAACAGAAACCCAACCCAC
TTTAGACAATGGCAAGCCGCTGCCACTATTACGAACATGACAAGCATAAATGATCTCCTG
CGACCTTTGTCTTGCGACATAATAACATGAGATATATGCAGCACATTTCACAATAACGTT
TCATCTGGCAAGAGAAGTAGTTTGCCCAGAGAACCATCAACAACGCTGAACGATCCAGAT
AAAGAACCAGCAGCTTTACTGGAGAGGCTTTCGCTCATGAAACCAGCACACGTGAGATCA
CACCCTGGACCCAGGATGCAGTCTCCCTTAGCTGTTCGTCATCAGACTGGGAGCAGCGCC
CAAGGAGCTCCGAGTGGAAATTTGAATTCTTGAGCAGCAGTTTGATGGAAGGTCCTAGCG
CATCTGCGAGGTCCCCGACCAAGGCAACTCCAGCTTTCGTCAGACCCTCATCCCTACAAG
GAATTTGAACAATATATCACCACATTGATCCAGTCCTTTGGCAGAGTAACAGATTTTTTT
TATACAGGCCCCGGTTATACTAGTTGAATGCATCCTTTAACAACGTCAGAGGTGAAAAGT
TATCTGCCTATTGTTATTATGAAGTTCATGTTTCCTACGTATCATTTACTTCAGTGTTCT
ATTTGAGAATATGACAAACGAAATTGATTGATACATTGACTACATAAGGTCATGAACTAA
CCTTGATGTCTCTCGCAAGACCAGTTCGGCAAACTGGAAAATATGGCCAGCATAAGGAAC
CATTAGCTCTGATTTTGAACTTTTGACTCCCTGAAGTATACCTGAATAGGCCTCGAAGAT
GCTTCTCCTGAGTTCATTTTTATACTCTGTACTGTCATCATCAGGAAGGTCCATGCGAGA
ACAAAGCTCTGCAGCTCCTTGCAACATAGGCACAGTGTATGGAACATATTTCTCAAAATG
CTCACCAATTGTAAGTGCAATATCTCCTATGCATGACATAATTGGTGGTTTCACAGAACG
GTGGAGCTCTGGGCTCGAAAGGTCCTTGAGAAGGGCAGACATGATACCATCACAGTAAGG
GAGTACCTTCTCATCCAGGGCACGACAGATGTCTGCTACCACACCCACAGAAACACAGCA
TACTTGATATGCACCAAAATTTTGTAAGCCCATTTCAAGGTACTTGTGAAACTCTGGCAT
GTATTTCACAAATTCCGGTCCAGTAGCATAAGCAAGAGCACCAATAGCAAGCATTGCTTC
TTCATGCACATTAGAACTATCGCATGAGAAAACCCGGAGAAATAACACCATTATTTCGTC
AGCAAACTGAATGATTACTGATTTATCATCACAGTTGCTGAACTTCTGAAGGATTACTTG
AACAACACCACATAGCAAGGCTTGAAGGTCACTTTGCTTTTCCTTGTCCTCAGAGGATGC
AATCTGGAACTCAAAGGTCTGGTTTAATCTCTTCAAGATCTCTTGCAATAATAACACAAT
CATGTTCAAAGTGTCTGCAATGCTGCTGCATCTCACAATCTCATTAAGTGTTTCATATGC
AGATGCACAAAGCCTGGAGTTGTTGGAATCAGAACGATCAGCAGTGGCAAGGAGAGCTGA
CACTAACTGACCAAAATAGGGTGACAGCACTGATGACATAGACCCTGCATTCTCATAGCC
ATGAGCAAGAAAATACAGGGCACCACAGATCTTCTCAGCAACATTAGGGGAGTCTTTGAT
ACTTGTTAACATAATTTCTAGAACATGAGGAAGGTTTGCATTTGTCACTACAGAAACACC
ACTGGTTGGTGCATGTAGAAACTCAAAGGTCCTCGAAAGTGCCCATGCAGTAGTCTCCCT
GACATGGTTATTTTGATCCTTGGTTGCATTTAGCAAGAAATCAAAGCCAGCTTGAACCAG
GGGTGCAAGCTTTTCAACTGAAGGACCTTCAAGAATGGAACCAAATGCAAATGTAGCAGC
CTCCCTGCTGTGCCAGTCAGGCTTTGTTATATTGCCCTCTATAAACGGCATCACAAGAGG
TACAATGGCATCCTTGACAGCCGTTGCAACAAGCCCAAGGCAGGTGCCCCCCGCCATTGA
TATATTCCAAATTCCATCATCTTCATCTTGATCCTCCTCTTGCTTCAGAAGTGTTTCTAA
AAGCATAGGGACAAGCAAAGGAAGGGCCTTTTCAATAAAATGGAAATAACATGCAGAACT
AACATCACCAGATTCTTCAGCGTCTTCTTGAATTGCAACTTCTTCATCACATATTGTGCT
CCAGAACTCAATAGCTTGAAGTGCTACTTGTTCTTCATCTGCCCTGGCAGCATTTGCTGT
CAACTCAAATAATGTCTGCATGTAGGGCTCTAGAAGATCATAGTATGTTGATGCTATGGA
GACCAAACACTCAAATGCAGCCTTCCTAATATCAGCCTCTTTAGAAATGGCAGTCTCACA
AACTACCTTCATTATGTAGTTCCTCTCTGATTCATTCTGAAAATTTGTCTCGGCAAAATC
AAGAGCATTGTACAATGCTTTAACAGCAGCAAGTCGGACCCCTGAACTATTCTCCATGTG
ATTCATACCCTGGACCACAGCTGTAAGAACAGCATTAACTTGATCCTGCTCCAGATCCTT
AGGGGATACCTCCTCACAGACATATCCAATGGCATCCAGGGTAGCCTGCTTCAGAGAAGG
GGGTGCATCTTGCTTTGTCATGTTACCTAGCAAGCTTACTATGAGTTCTGGCCATCCTTG
AAGAGGGATCTCAATGGATGCAATCTTTGCAATGACTTGTGAAGAACTGCGGTGAGCATC
AGACACTGGTGATCCAAGGGTCATCAACAGGGAACCTTTAACCTGTGACTTGATTGCCGG
GTCCACACTTATCCATCGTTGTGCACATTTTTCTTTCCTTGCTAAATCATTTGCATCCAA
AGAATTTTTAAGAAGAATACCAGCAAGCCTTCGAGATACAGGAGGTTTGTTATCATTTGA
TAGCTCAGCAGATAATGCTTGCAGAAACTGTGGAAAACTCTGCTCCTCAAATTGCTTGAT
ATTCCCTTCTGCAGCATTTCGGATCTGACCATCATGGGACTGCGTAGCTAGCAGAACCTC
AGTGATATCCATTAGCTTAACCTGCAGTACGAAGATCACCAGAAAAGCATATAAGATACT
AAGATCTCAAGGTCAAAAATGAAAATAAATTGGCAGGCTCCACCTTGGTTCAAAAATAGT
CTAGCTTTAATCCAGTTTGCTTAATGAAAATAAAAATAATCTAGTTTACTCTAGCCGCAC
ATATTGTTCACATTGATACAGTGCAAAAATATAAGAAAAAGGATAAAAGTAGAACTGCAA
GCCTCCAACACAGTGCGGTCACTTCTGGAAAGTGCAGGGAGGGTGCAATAGCTCGCAAGA
GATTCAATGCACATTACTTCACCTGAGCTGTCGCCAATTACCAGGTCATTTAGTTTCTGA
ATCGTTATTATTTTCCTGAAGGATGAGTTTCTGAATCGTTATTATTTTCCCAAAGGGGAG
GTTTCTGAATTACAGTCCAAGTATAAACTATGGAACGCGACTGTTACAATAGAACGTAAA
TCTAAGCAATCAACATACCGTTTAAATGACCGTGAACCACGATCCAATGATGCTTCTCAT
TCAAAAATGCTCTATAGTACATGTAGAGACAAATAGTTTCTAACATCAGGTGCGAGGATC
TAACCAACGAGAGGCATCTAGAAAATCTAAGTTATTCAACAGGGCGTCATGCTATAATTA
TACTATGACGGACAGAAAAGCACAAAACAATTCCTGCACGCGTGTTTGTGGAAACTTTGG
GATCGATCAAAAAAATTAAGATCGAAGTGGCCACAGATCGACCTGAGCAGACCAGAACTA
AAGTACAGTAGGCGATACAAGCCGAATCAACACTCCCGTGCAGAATCAACCGCAACATCG
CACGATTCAGGGACGAAAGCCAAAGCGACTACGCGGCCTAAACCGCCCCACGGATCTCCC
CGCAGAGGAACTTCCAGAACCCGCCGCCAACCAAACACCAGCTCGGATACAGGAGCGTCA
TCAGATCGGGAAACCAGAATGATACTGGGGCCGAGCAGCGGATATTACCTTCGACGGCGA
GCGCCGCTGCTCTCCGACGGGATCCTCCGCTGCTCCTTGCCCCCGCGCAACCTCTCGGCG
GCGATCGGGAGCCGGTTCCGAACCCGGGATGGGGAGATCGGTGGGGATTTCGGACGGGGA
CGGGGACGGGGAAGGTGGTTGGGCTGGGAGGGGCGGAGGGGTTTTGGGGCTGGAGAGAAA
TTTGAATTCGTGGGGGAGAGAGACGATGGGGAGCGGGGTGGAACGGTTTGTGCTGACGCT
GGGTAGAAAAAGGGAGGCGAGGCTGCGCAGGGCGGTGTGAATGCGTGCGAGTTTGCGACC
CGGCGGCTGAGGTCGCGCTGGACCAAACCCTAGGGTGCCAGGCCGTTGGTGCGTTTGGGC
CTTGGTGATGGGCCGGTACGCAAACCTCGCGTCTTTCCTACTGTGCTCGATCTTTTTTTT
TTTAGAAGATTGTACTATGCAGCTAGGTTGCATATCAGTTGATGCATGCTCTCCTCGATC
CATACACCCTACCAAACAACAAAAAATGGGTCGGGAAGAGAACTTTTGGGCTCATGCACT
CTCTGAGCAGGCTGCCAAACACGTCCTTATAGCCAATTCTGATTTTTAAGAAACATAAGA
ATAACGTGGATCTAGCACACAAAGTGAAATTCCGTCCATTAGAGGATAATCTTTATACTT
TGTAGTTCTTTTGCCTTAGAGATTGGGAACGTGTGCTACAAGAAGGGCATAGAACTTCAG
AGGAAACGCGGTAATCATCACACTGTATGATGGTATAACCAATCCAACTAAGGTGAATCT
TGATACTTTAAACATATGAATAGGGCTGCAAACGAGTCAAGTTCGAGCGAGTTGTACTTG
GCTCGACTCAGTTCATATTAAAATTCGAGCGAGCTCAAACTGAGTGAAGCTCAAGATCAA
GCCGTAAAACATGACTCATGCTTAGCTTGTAACGATCTCGAGTTACTTTCGAGCTAAATG
AGACCGTAAAAGAAATATTCACTTTGGCTTACAGTACGCTCAATTACATGCACCCTATCC
AAAATATTTTACACGTGAATAGTGTAATCATAACTTAGATCTTGAGAAAGAACCGCATAC
ATATTCAGATATTATTCAACGTGAAAATGAAAAAAAGGGCTTACTTCAATCGATTGTACA
GTCATCATGTCATTCTTCAAAGAGCTCATCTTGCAGCAGATGATGGACTTCCTGGAAGAA
AGATAGGAAAACCAAGGAGAATATGCTTGGGAATTTGTCCCAAAAGAAACAGAATATTAA
CACACACCCGATCACATATGGTAATAAGGCCTAAATTTTCTCTAACACTTAATTAAACTT
TCATGTTTCCTAGTAAACAAAAATGAAGAAAACTCATGGACAACATATATGGTAATAAAC
CATTCTATTTCCAATTAATATATAACACGATCATTTAACATGATGATGTTAAGCNNAGCT
ATCGATCTAAAATCGAGCGAGCTAGTATTGGCTCAAGATCGGCTCGTTTCTTGACCGAGT
TACACATAGTGTTCATACTCAACTCGTTTCTTTTCGAGTCGATCTTGAGTCAAGCCAAAA
GATGAGTCGATCTCGAGCTCACGGCCTCGAGCTTTTCTTGCAGCCCTACATATGGATTTA
GATTCACGATGTTCCGGATCTATATGCACATCTAATTGAGCCCCTAGCAGCGAAAGTTGG
TGAGGTTTTGTTCACCGAAACAATGTCGCAAGACTACTTTAGGAATTATTATCGAGTATG
GGTTAAGATCAATGTGCACAAGCCGCTCAAGAACGTTGTGACCATGATCCGGGACGGCTA
GGGGCATGAACCGGGATGGCGAGAGGTAGATCTATCGCGTGAAATATGAGGGATTACCTT
ATTGGTGCACGTGTGTGGCCACCTTACGCATATCTACAAAGAGATGGTGATGGTATCCAC
CCACCTTCTGCTCTACATTACAAGGACCTTAGGGCTTCATGGAATATGCGAGTTGGTGCA
GGTCCTGGGGGTGGACGTTCAAGGGAATGTCGGGGCGGCAACCGCGGCGAGCGTGCAGGA
CGGGGGTATTCTCGAGATCATACCCGGAGCATAATATAGGGAAACCGATGGAGGTCAATG
TTGATGCACTCATGAAAGAAGCTGAAGATAGTAGAAAATGATTGTTTGGTGATCCCCAAG
GAGGAGGAGACTCTATGTCAGTAAAATCATAGACATCAAACAATCTTCTTGTATGCCCAC
TCTGCTAGTGCCGACGAGCCCCTCATCCAAGCAGGAACTGAAGAGGCCTCGTGTGACCTC
GGTAAAGAATGGTCCGAAGAAGGGTGTTGCTTCCGAAAAAACAGTTAATGCAAGATCGAC
GACCTACCGCTTGGCAGATCCCCGGGATGCAATGAATCTCCTATGCTAGAATTATCATGG
TGCGGGAAAAGCTGCGATAGTTCAAGAGCTTCGTGATCTCTTGAAGCAATTTTCCACAAA
AGTGCTATGCATAGTAGAGACCTAAATCTCAAGATCACGTGTCTAGAAACTTGCTAGTAC
TCTAGGTTTTAATCATTCGTATGTTGTTAGTAGTTCAGGTCGCAGTGGTGGAATAGGTTT
GTTTTGGAATGATGTAATAAAACTTGATGTGTTTGAGTACTCTGAGTATCATGTTGATGC
AACTGTGTCCACTGCTAATCAAGCAGTTTGGAGACTCGCATGTGTGTTCCATGAGGCGCA
CGTGGGAGAAAGGCATAAAACTTGGGATCTGCTCAAATCCCTAGCATCGACAAGCACTTT
ACACAGGTTGTGCAACGGTGATTAGACAAAGTATTGCATTTTGCATGAACATGTTGGAGT
TGGTCAGCGGTGAGCCTGACAAATTCAAGGTTTCCGTGAAGCAATGGATGTTTGTGCTCT
TCAAGACTTGGGATACCAGGGAAAAGCATGGACGTTTGAACAGAAAACGGCTGGGGGAGA
GTACTGTCGAGTTTGACTGGACCGTGCGATGGCAAGCTCGAACTGGCCATCTTTGTACCC
CCGCCATGCTAGTTTGTGTTGGAATTATGCCCTAG