morexGenes - Barley RNA-seq Database

Contig contig_38769
Source Contig contig_38769
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38769 (9147 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_38769

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53950	5	1950 bp	MLOC_53950.2	Available	Available	LOC_Os08g33740.1, FRAME:+2, EVALUE:0.0, 13108.m03520 protein CSLA11 - cellulose synthase-like family A, expressed
CDS Structure of MLOC_53950

Contig Sequence (9147 bp)

>contig_38769 9147 assembly3_WGSMorex_rbca.fasta
CTGGCGGCGACGAGGAGGCCGGCCTCGGCGGCGGCAGCGCGGCGTTCCCCGTCGTGCTGG
TGCAGATCCCCATGTACAACGAGCGGGAGGTGAGCTCCCTCCTCCCATCCTAGTGCTTGG
GTGGTCGCTCGTTAGGAAAATGTTTGTTGGATCTGATGGGAATGCATGGGAATGGAATGG
GATGAATAATCAGGTGTACAAGCTGTCGATCGGGGCGGCGTGTGCGCTGGAGTGGCCGGC
GGACCGCGTGGTGATCCAGGTGCTGGACGACTCCACGGACCCCGTTGTAAAGGTATGCAA
CCAATCAATCCGGCCACCGCGCGCGCATCTACCTCGCCGCTGCAAAAAGCCATGATTCAC
GTTATTCCCGTACGTGCGTGCGTGCATGTTCTCCATCATCGCGTTCTGGCTGGCGCCTTC
GTTTTCTCCGTCCCAGCCCCAGCGTGGCCGGCCGGCCGGCGGCGTCGTTTCGTGGCTGGC
ACCGGGCACTGCCACCGCCGCAATGGCAAGTGGCAGCTCGTCGTCGATCGTCGCTGGCAG
AGTGGCACTGGCGGGCCCCACGAACGTACAGGGATGGACATGGACGTACCCCCTGCAGGT
TATAGATTGTTTGTTTGCTGGCAATTGGGACAGTTACTAGTTCCCGCAAGTGGTGCCACT
TGCCGGCCGTGTTAAGTGGAGACGAAGGGGTTGGCTGATCGGCTTGTTTGCTACTGAGCG
GACCCCTCCTCTCATCAGTCAAGAAACAGTGAGCCCGTGACTGACAGGCGTGTTTTGTTA
GCCTGTCTAGTACAACTTGAGGAAAACTCTCCCTGAAAAAAAAATATATTCTTTTACTAT
CAACTTTATTGCTCTCGATGCCGAGTCCTGCACACGGATGACACCGATCGTAGGCAAGCA
AGCAAGCAGTGGCCAAGAGCCCAATTAGAACATGCACGCATGTGCACACAATCAATTCCA
GCGGCATTCCCATGCGTGGTCACCGTCCGGCGAGGATCCCTCCCTTGTCCCAAACCCAAA
ACCGGCGCATGGAGCAATGGCCGGCAGCGTACGTCTTCCTGGCTCCGGCCGGCGGACGCG
CCAAACTACTAGGGTTCTAGACTACTTATCCTAGTTGGCTACGTATACGTACGAGGCGCT
GCCGGCCGTTGATTTTGTACCTACTCTCACTACTCGACGGGCGCCACTCCAATCTGCCAT
CTGGGCTTTACATCTATGCTTTTATTTGATGAAACGGAGTGAGTACTACTCCTTCGTCTC
GAAATAAAAGTGTCTTAACTTTATACTAGGTTTAATACAAATTTATACTAAATTTAAGAC
AGTTATTTTGAAACGGAGGAAGTACTTCTGCTACATACACTTTTTCCTTCGCGAGGGAAT
TAGGAAGCTCATATTCATTGAGTATAGATATAAAGTGGAAGGGTTAGTTGCCTCACGTAC
AGGTCATGACACACATTTTTTATTCCTTTTTGGCATGGCATGATACTCCACTACCCTGCC
TGCGTCCATCGCCAGAACATGACACACATGTTCCCCGATCATGCATGCTGCCATCGATCG
GAAAATGCTATGCCCCGACCTATATCTATAACTAACTAACTAGAATATATACGTACGTAC
GTACCTGTTGTGTTGGCCATGTGACCGATCGATCGAGCAACGCAACGTGAGGAGGAAGCG
GCATGCATGCATGACAGTGGGTGGGTTGGGTTAGGTAAGGTGGCTGGATCCAAGTCGTCT
GATCCATGGAGGAATCCTTGATAATGACGCCACGGCTGTAGCATCTTGGATGATTGATCG
ATTGGCAAGTGGTAGGGTCAGCCAGCAGGAGTATAAAGCAAGCATGCATGCATGTTCTTA
TCTTTCTTTATGCATGCACCCCCTCCCCGATTCTCACGGTAATTTCGCTCATCACCTCTC
TGCTAGTCAACGCATCACTTCCATTTTTTCCTACCCTCGTATACATTAGAAAAGGAAAAA
AGGTGATGAACTTTACACGCTACATATCATTTGACCACGCGGCATCACGTGGTTTTAGCT
GGCACGACGCTCTTTGCTTGTCGCGTTCGTTGGGGGTACCGGATTCCATGCCGGGCGACT
CCGATCCAAAGATGTGGTGATAATGTGTGCGCCGTGCTACGTTCTAGCTAGCACTCGTGC
GTTGCTGTTGCATTCGGGGCGCCAGATTCCAACCCTGACGACAATGTTCGCGGATTCCTT
CTCTTATTATCTGGATGAAAATGCCGTTCATTTCCTTTTTTTTTTTTTGCAGAGAAATTG
CTATTCATTGAGGCGAATTATTGCCTTTACTTGTTGCAAACTATCTATTATCTTAAAAAA
AAAACTATCTATTATCCTCAAACAGTCTTGCTAAGTCTGAGTCGATTGAGACTTTGTTAA
GGCCCAATCGATGATTTATCCGCGGAATCTTACATTAAGATTCATATGGTTTTTTTATTT
TTTCTCTTGCATGTTATATCATTTGACTAAGACTTGGTTAAATCTCAGTCGACTTAGACC
TAGCCACGCCTCTCTTTAAAACCCGTCTTTTAATTTCCACCGGTGTTAAAATTTAGGCAT
ACAGTTGTGGATGCAGTTTTGATCCTGTGAAAAGGCAGAGTGAGTGTTTCCTGCTGCACA
GTTTTTTGGACAGTAGATTACCCAACAGCTGATTGTAATTTCTGTTCCAATTTTATCAGG
ATCTGGTGGAGATCGAGTGCCAGAGGTGGAAGGGCAAGGGCGTGAACATCAAGTACGAGG
TGAGGGGCAACCGCAAGGGGTACAAGGCCGGCGCCCTCAAGGAAGGGCTCAAGCACGATT
ACGTGCACGACTGCGAGTTCATCGCCATGTTCGACGCCGACTTCCAGCCCGAGTCCGACT
TCCTCCTGCGCACCGTCCCCTTCCTCGTGCACAACCCCGACATCGCCCTCGTTCAGACCC
GATGGAAATTCGGTGAGCCCTCGGAACAGCACTCCGTTTCTTGTCCAGGCACACGCGCAT
TGTTGTGAGTCTCATAATTTGTTGTGTTTGTTGTGCAGTCAATTCGGACGAGTGTTTGCT
GACGAGGTTCCAGGAGATGTCGCTGGACTACCATTTCAAGTTTGAGCAGGAGGCCGGGTC
CATAGTCTACTCGTTTTTCGGATTCAACGGTACGTAAACTCGGTTTCATCATATCATATA
TACACAGCTCAAGCATCCAATTGAGCACGCTGAGTGAGTGATCTTTTGTGGATTTTTGCA
TCTTCCAGGGACGGCCGGTGTGTGGAGGATATCGGCGATCGACGATGCCGGGGGGTGGAA
GGACCGGACGACCGTGGAGGACATGGACCTGGCTGTTCGCACTGCGCTCAAGGGCTGGAA
GTTCGTGTATGTTGGCGCCGTAAAAGTAAGCCAAAAGGAAATATTCTTTTATTTACCTGC
TCACTTCTCTGTCAGAAAAAACGAAACCCGTCAAGATACAAACCTAACGATGCTCGGATA
TGTGTTTGGTTAGGTCAGGAGTGAGCTGCCAAGCACATTCAAGGCGTACCGGTTTCAGCA
GCACAGATGGTCATGTGGACCAGCAAACCTGTTCAAGAAAATGTTGATAGAGATTCTAGA
GAACAAGGTCTGCATTTCTCTACATAATAAGGGAGGATGATGTATGAGTTCACCTGCTTC
ATGACTGACATTTAATTTTCTCTCTGTGCAGAAAGTGTCGTTTTGGAGCAAACTCCACCT
CCTGTACGATTTCTTCTTCGTTGGGAAGATTGCTGCTCACACAGTGACCTTCATCTACTA
CTGCTTTGCGATCCCGTTGTCCGTTTTCTTCCCTGAGATTCAGATTCCTCTCTGGGGTGT
GGTCTACGTTCCAACTGTTATCACCCTCTGCAAGGCTCTTGGATCACCAAGGTAATCCCA
CATATTTCAAGACTGAAGTTGCAGAACTGAGAGCTGTACTGTTTATTAAATTCAGTTAAC
ACTAGGAAGCTACTCTTTCAGTTCATTCCATCTGGTGATTCTCTGGGTCCTCTTTGAGAA
CGTGATGTCGTTGCACCGGATAAAAGCGGCGGTAACCGGTCTTCTTGATGCTGGACGAGT
TAATGAATGGGTTGTCACTGAGAAATTGGGAGATGCCAACAAGACGAAGCCAGCCATGGA
AGTATTAGATGCTGTCAAAGTGATAGATGTTGAGCTAACAACGCCCTTAGTGCCAAAGCT
CAAGAAGAGGAGAATAAGATTATGGGACAAGTAAGCAAAGTTTATTCTCTCAAAGCTAAT
ACATTACGGCATATTCTACTTTGGATTTGGATTACTACATACAAACTACCGATTTGCGCA
TTTTCTATTTTTTTTCGACAGAGGGTCGATTTGCGTTTTCTGGTTTTGTGAAATAATGCC
TGATGTATCTGTTCTGTTTTTATCAGGTACAACTGCTCAGAGATTTTTGTTGGAACCTGC
ATAATAATATGCGGTTTCTACGACGTGCTCTACGCAAACAAGGGATACTACATCTACCTC
TTCATTCAAGGCCTGGCATTCCTCGTCGTCGGTTTTGAGTATATTGGCACACGCCCTCCC
ACTCCCAGTGCCGAATAAGGTGCCATTCATGGAGCTGATATACATGGTTACGGCAAACCG
CGTGCGACTAAAGCCCCTCTCCTGCACATATCGATCTCAGAACATAGCGATATACAGAAC
CATTTTCCTCGGCCCCGGTCAGATCTGATCCAACCATTCTTTGCTGCTGAGAAGGCTATC
GAAATAGCATGGTAGCTCATCTGATAATAACATGCAGTATTTACTGAAGCATCACGACAG
AAAGATGCTTTCAACACCTGGAAGAATAACAGAAGTTGTAAATGAAATAACATGCTCTGC
CAATTACTTACTGTAGATTCTCCAAATTTTTATATGCCAATGTACTTACTGATGTAGCTC
TGTTCAGAATAGAGGATGATCAGCAGCACTTCGTCCAGTTGTGTTGTGTGGTAGGACAAA
CACATGTAAATGTACATTGTTGCTCAAGACCATTTATAACTCTGTCAAATTTAGACAGGC
CTTAGAATGCAGTAACAAATATTCAGACAGATGTTGGAATGCAGTCAAATTCAGATATAT
AGCCTTGCAAGTAGAGAGATATTTGTGGTATAACCTTTAACTTGAAGCTGGGTGGGTGGA
TGGATCTACATCAGCCATTTCTGCTGCTACTTGAGAGGAGAAGTAGTGATGTCAACCTCC
TCCAATTTGGGCAAAGTAATTTTTTGGAGTACAAACAAATTTTGGGCAAAGCAAATACAA
AGAGGCCCAACCCAATTGTCACCTCTGGCCTCTTTAATATCTTGCATACACCTGCAGGTT
TTTGTGATATTTCCAGTAAATATATACTGCCATGATTTCCATTTATTTTTGACTTCATTT
GTAAGGAGACAGCTATCATTTTCTCTTTTGAAAATAATAAATAAATGATCCCGCAAAAAA
AAATGTGGCTAAAATTTAAAGTTTTGCCCAAAATTGGGCTGCTTTCAGTCTAGCCATATT
TTATATCCTACGTAGCCTGCTGCTTATAGAAGGACCGTCCCTATGAAATCATTAATTGAG
GATTACTCTTTTCAAAAATCACTCCCACCTCTTCAGGTTGCGACAAATGACGCATCTCAT
GTCTGTCACTTATCATAATCGGGGAGTTTTCTCTTTTTTCGTAGATCCTTATTTTTGAAA
ATGTTTTATCCCTTAAATTTCAAATCGTATTCATGGTTGGATTCCTTTCATCGAAATCTT
CAAAACCAGATCCCATGTTTATAGGTTTTGGCGAACTTTTTTTTTCATGAAAAAAACAAA
CGAAAAAATCGTGCCTATCGCGGAAGAATAAAAAAGAAAACGTGTTTTTTTCCTATTTCT
GAGCGCCTCTCGCGTAAGCGAACCCGTGCCTCTCGTGGAAGAAAAAAAAACAAAAATACG
ATTTTTTTTCCGTTTCTGCGTGCCTCTCATAGAAGCGAACCCGTGCCTCTAATGGAAGAT
TTTTTTTCTTCAAAAAACGTGTTTTTTTTTTCGTTTCTGAGAGACACGACCGTGCCTCTT
GCAAAAGCAAATCCATGCCTTTCGCAAAAACAAAACCGTACCTCTCATGAAAAAAAAATA
CGTTTTTTCCGTTTCCGAGAGCATGGCGGTGCCTCTCACGAAAGCAAATTCGTACCTCTC
GCTGAAGCAAAACCGTGCCCCTGACAAAAAGAAACAAAATACGTTTTTTTGTTTCTGAGA
GGCACGACCGTACCTTTCACGAAAGCAAATCCATGCCTCTTCCGTAAGCAAAACAGTGCC
TCTCGAGGAGGGAAAAACACGTCTTTTTTCGGTTTTGAGAGACACGACCGTGCCTCTTGC
GTAATCAAATCCATGCCTCCGGCAAAACAAAAACCGTGCCTTTTCGAAAAAGGGAAAAAA
TGAGTTTTTGCACAAATATTTTTTTAACGTTTTTCCGTCCAAAAGCTAAGAAAGACGGGT
GAAAAACCGATACACCTAAACAACCTAGAAAACAAACCCACCTAAAAAGTCAAAACTGGT
GCAAAAAAAGTAAAAATTAAAATCTGAAGGAAACGCTCAGAGCACGACACGTGACGGTGG
TGAGAATGCGTCAAGTGGCAGTGCCCCGGAGTGATTGCTGGGAAGCTCCCGAAAGAGCGC
TCTCCAACTAGTTGCTCTCGCGTCCTTATGCCTCTCCTTCAGCTTCCGACTCGTTGAAGG
GGCGACCTAGATGGGCCGGGCCACGCACGTGGCAGGCCGAAAGCGCTGTTATGTTTTTAT
TTTGGTTTTTTATTTCATTTTTTGTTTCAATTATTGCTTCATTTTGTACTTTTATTTATG
CTTTCAAATATTTTAATTAATTGTATGATGAACACTCTACAGACAGCATTTGACATAATG
TTGAACAAGTATTTGGAAAATGTTGAATACGTGTTTGAAAAATGTTAAACAAGTATTTAA
CAAATGTTAATCAGGCATTTGGAAAAATATGGAATGTAAACAGAAAAATTGTTATCATGT
ATTAAAGAAATGATGAACTTTTTAACATGCATATAAAAATATTAATCAAGATTTTTTTAT
AAAATGTTCAACACATATTTAAAAAATATTAATCAGTCGGAAATAGAAAATGTTGAGACT
TGGCAACGACATATACAAACAAATTTTCCAAAATAAATTTCTGTTAGCACCTTGACAAGT
TCATTTGGGCAAAGCAAATGCAAAGAGGCCCAACCCAATTGTCACCTCTGGCCTCATTAA
TATCTTGCATACACGTGCAGGTTTTGGTGATATTTCCAGTAATATATACTGCCATGATTT
CCATTTATTTTTGACTTCATTTGCAAGGAGACGGCTATCCTTTTCTCTTTTGAACATAAA
CAAATGATCCCTTGGAAAAAAGCGTGGCCAAAGTTTAAGGTTTCGCCCGAAATTGGGCTG
CTTTCAATCTAGCCATATTTTATATCCTACATAGCCTGCTGCTTATAGAAGTAGCGTCCC
TATGAAATCATTGATTTGGGAGTACTTTTTTTAAAGATCACTCCCACATCTTCAGGTTGC
GACAAGTGACGTACTACATATCTATCACTTGTTGTAACTGGGAGTTTTTTCTTTTTTCTT
AGATCCGTTATTTTCAAAATATTTTATCTCTAAAATCATGCGTTTAAATTTCAAATCGTT
TTCATCGTTAGGTTCTTCGCGTCGAGATCTTTCAAAACGGATCCCATGTCGATAGATTTT
AGTGAACTTTAACAAAAAAATAACCATGGCTCTCGCGGAAAAAACATGTTTTTTTCTGTT
TCCGATAGACACATTATGCCTCTCAAGTATGCAGATCCGTGCCTATCACGGAAGAAAAAT
AAATAGAAAACATGTTTATTTTCCCTTTTTGAGAGGCATGACCATGCGTGCCTTTCGCGA
AAGCAAATTCGCGCCTCTCGCGGAAGCGAACACGTGCCTCTCGTAGAAAAAAGAAAAAAA
TATGATTTTTTTTCCGTTTTCGAGATACACGACCGTGCCTCTCGCGAAGGCAAATATGTG
CCTCTCGCGGAAGCAAAACCATGGCTCTCGCAATAAAAAAACACGTTTTTTTACCGTTTC
CGAGAGGCTCGGTCGTGCTTCTTGTGGAAGGAAAATTGTGCCTCTCGAGGAAGGAAAAAA
TGAATCTTTTTTTTTTCGTTTTAGACAGGCACGACCGTGCCTTTTGCGTAAGAAAATCCG
TGCCTCCGGCGAAACAAATATCGTTCTTTTTGAGAAAGCAAAAAAATTGAGTTTTTCGCG
CAAATATTTTTTTTAACTTTTTTGTTCAAAAGCTAAGAAAGACGAGTGGAACACCAGAAC
ACCAAAAACTCCTAGAAAACAAACCCACCTAAAAATTCAAAGACACGGAAAAAAGAAAAG
AAAAAAAAATCTGGAGGGAACGCTCACAGCGCGACACGTGACGGCGACTGAGAACGTTCT
GAAGGGGCGTTCTCTAACTAGTTGCTCTTGCGTCCCTATGCCTCGCCTTCAGCTTCGGAC
TCGCTGAAGGGGCGACCTAGATGGGCTGGCCACGCACGCGGCAGGCCACATACTCTATTA
TGTTTTTATTTCGGTTTATTGTTTAAATTTTTGTTCATTTTTGTACTTTTGCTTATGCTT
TGAAATGTTTTAAATAATATTACGACAAACACTCTACAGACAACATTTTACATGATTTTG
AACAAGTGTTTGAAGAATGTTGAACAAGTATTTCAGAAATATAAGGAAGTATGCAGAAAA
ATATTGAACGCAAATAGAAGAAATGTTGATCGTGTATTAAAGAAATGATGATTTTTTGAT
CATGCATATAAAAATATTAGTCAAGCATTTTGAAAAATGTTGAACCAAAATTTGAAAAAT
GTTAATCAAGCATTTTGAAAAATTTTGAACTAAAATTTGAAAAATATTAATCAAGCATTT
NNAAAATGTTAAATGTGTATAGAAAAATATTGACCATGTATGAAAAGAGATTAAAAGATT
AGATAACGCATATAAAAGTGTTAATCAATTATTTATAAAAATGTTGAACACATATTTGAA
AAATGTTAATGAAGTATTTGGAAAATGTGAAATATGTGTAGAAAAATGTTGAACATGTAT
TAAAAAACAATGAATTTGTTTATCATA