Map Locations of contig_38741 (9281 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38741

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53920 4 1047 bp MLOC_53920.1 Available Available LOC_Os08g17294.2, FRAME:-2, EVALUE:3e-121, 13108.m01848 protein PSF3 - Putative GINS complex subunit, expressed





CDS Structure of MLOC_53920






Contig Sequence (9281 bp)

>contig_38741 9281 assembly3_WGSMorex_rbca.fasta
CGGCGGCGGCGGCGGCGGCGACGGAAACCTAGAGAACGAGAGCCTCTGTCCCAGAACGAA
TGCGAGCTGTTTCGATGGAGAGATGAGTTTGGGCTGCGGTGGCATATCCATCGTAATAAC
GATGCGAAGAGTGTCTGTATTTGGAATGGGGTAAGTGGCAGCTCGGGAATCAGCTTTTTG
GCTGATTCTGGCTTCCGGTTGCGTGTAGTGCATTTTTAGGAATCGATTCTACGTAGCTGT
GATGCGAATCTGTTGTTTGTTTCAGAATCTGATTCTGGAGGAGCTAGAATCTGGGAATCA
ATAGCTAAAGCCCAAACAAAGGCCACCTCAGTTGTATCGTTTAGGATCTTGATGTGATTC
TTCTGTCTGTACAAGCAGAGGGGATTTAGAGTGAAATCATCAATCATAAAATGGCAATGG
ATTTGATCCGATCGTCCGTGTGAGATTTCAAGATTTTCCAAACTTGAGTGTGGCTGTTTA
TTTTGGTGGTCAATAAGACTATAAGTATCGTAAGTACTGTGTAGATCCTGCAGAGATTAT
TTGACTGCACCTGTACTGTAACTGTAAGTAACTGATCCATTGATACAAGTAAACGACGCC
AGTGACGCTCGCTACCACAGAGCGCTAGCAGTAGCACAGGTTAGTGATGCACCAGATTGA
AATACGTACATACAGTCTGATCGCCGATCAGAACTGCCTTTCGTGCATTTTTTGTTCCGT
CAGCTACAGTACCAGATCGATTGGTGTACAAGCATCGGCCCTGTCCGACCCGGTAAAAAC
AGTTTCAGGGCGTCGAAGGCCCATCAGGCAGCTTTGTCTTCCTCTTCCTTCCAAGAATAG
ACGCCTTCTGCAACCTCGCACCCCCGACGCGCCACTTCCTGAAGGCGGACATCGACTCCC
TAGCAGATTCAAACACTGCACGTCGAAAAGAACCAAAGTTAGCCCGGCTTGGAGTGGTTG
ATATGGTAGGGGGAAAACAAACAGGGGAATTGGTAAGTGCGCGAGGGAGATGTTTGTACC
TTGAGCTTCTTCTTTCGTAAGGCGCGTTGCCAACTTGGGCACTGTCATCGTCGAAGAGCT
GTGTGCCTTGCTTAGTATCTCCTTGTACCTACTGGTGAACGCGTAGCGCAGGAACTGGCC
AATGCTCTTGTCACCCACCCTGTTGATGCAGCAAAGCAAACTTCGTAAGTCAGTGAGGAA
AATAATTTAGTCTGACCATTATACTAGTAGGGAAGTAATAACTCAAGTAGAAAATTGGGC
AGCAGTCCTGATACAACTTCAACTTTTTAATAATCATCCAGTTATGTGAAATACTCCAGT
ACAATAACTAATGTGTGCCAATATTTTGGCCAAATTTAAGGTAATAGCCTACACATCTAA
GGTTTAGCCACTTAGGTATCCGCCCCTGTTTGGACAGTCCTATTTCATTACTGGACCCAT
CCGTGTACACATGTATCATATCTCATCCCAATGATTAAGGCGTCCGACTAGAGTACGAGT
CAACACTTGGCTGAGGCTCTCAGATGGACATCTTCGACTCAACTTACTGGGCTAGCAGCG
TTAAATATCTATGGAATCATGTCCTGAACTCTAAGCTCGTAACTCCTAGTCCACGTCGGA
TGCTGTTTGTTATGAATTCTGAAATCTATTATGCAGACATGTTCTCCTTCTCTCCTAGTT
CACTCTCTCCTGCAGGGGGTCTTTCAAAGTGAATGTGGACAGTAACCAGATGGGTTGGGT
GGCTTGGGTCAATTTTATCGCCTGCATATAGAAGGTGAGCAATTGAGAGCCTTTCCTGAT
CTGCTTACAGGGAAATTCAGAGCTCTAAACTGACCACAAAAGAATGTGCCACACAATGCA
TGTCATGAAGTGACCCATTAGCACTGTGATTGACATAGGTCATATCTAATCTGAGAATAC
TTACACCTTTTCAAGCTAATCACCTGAACCATCAGGAGAAACTCAAATCCCAATTAGGAC
CACTCAGAGTATAGAGGCACCTCTACATGTTCACTCAGTTTCTCACAATATGTGCTACAG
GCAGCTAGCCAGCTACTAAACATTCAATTATTTCTGTTCTACTAGTGCCCACCAAAATTG
AAGGCAAACCACCATTGAGATCTATATCTAGGTCCTTGAAATTTTCAGATTACGATGATT
ACAGTCAGCTCTTGTCCTAATTAAGTACATTGTCCAGAGTATGCCTTTGAAAAGGGACAA
CCCTCAAATAATCATAGCTTATTTATTCAAGAAAATTTAGTTACACACTGTCGTAACACG
ACAAAACTGTGCTAACGTTCGTGGCCAGCAAATGTTTTTCATCAGAGGCAGCTGGCAGGG
ATGGGTCCAATGGTCCTACGTACTGAAGGTGCCTGAGTGAGCGATGCAGTAGATGCACCT
GAGTGTGGTTCTTTTTAGCTGCAGTATTTTGAACTGGTTCATGTTCTGTTGTAGTGTTTT
TTCTAGTGACCTGATAGTAAGTAGTTTCGGTGCTGGGAGCTGTGTTTTCAAATTGAACTT
TTGCATCTTAATCCTTGCAGTGGATGTGCTACCTTACGGTGGTTGCATGGCTGGTTCTGG
CCATGGCCGTCTTGTCTGACTCGATTCGGGTGATGTATTACGATTTCATTTCTATGAAAT
TGGGGGACTGGAGCTCCTTGAATAAAAAAAAAAGACTTAGTTATGGTGTATTCTGTTTGT
ATCACCATGTGTCAACACACATCCAGAGCACAAATTGACCTGGTGGCATCAGAGGTTATT
TGTCAGGTGTATGATTAAATTTCCTAGAATGATGGTTTGATCTCAGCAACAATGAGAGAA
TCAGCAGGGAATATATTTGATCATTTCCAAGCAACCATATACTGCCTTATTTGGAATAAA
ATGAAAGAACAAGAAGAACAATCAATAACATTTCAAGAAGGTGCAGTTTATACGGATCTT
GTTAGAAGCAAAAGTGAAACTAAAAAGCTAAAGCAAAAAGGCATGACTCACTATGACTTA
CTAAATCATTTGTTGGAGCAGACAAAGGGGAGCTTGCTGCCAAGTGCCAAATTAGAACAG
TAGAACATGCTCAGACCATGAGGCTGGAAGTTATAATCATTTGTAATAAACACCAATTTG
AACATAGTTTGGTTAAATTGAGATGGGAGATAACACTGTGATTGTGGTTAACAGCATGTG
TTAGTCTGGGCCCTCCATAAAGAATATGATTGCATTTCTGTTCGCAAGCAGTCAACTTAC
CTATGCACAGTTCATAGTATTAACTGCATTTACTCCCCAAGATTACAGCTACTTGAACTT
ACAGAAGTTCCTCCTATTTCAACTTAATATGTGACTGCAATTATCATTTTTATGGGCATG
TAAGCATTTAAATTTTTACAAAAACAGAATACATGTAGAAAGGATAATGCATTGTAGTGT
TGTATGCCTACAAAATTACACAGTTATTGTAGTAACTGAGAATATAACATGTCTAAGGCT
CATCAAAGCTCTGCAAAGCAGTGGAGTGGGTAATCTATTTCTAACAAAGATCGTATAGAA
ACATTTTAGTGAGAATTTACGAATTTAAGATTGCACAGAGGAAGGTAATGAGATAGAAAA
ATATGGAAATAAAATAGAATATGTAACTGAGGTCGTTCAGAACTTACAGAGGAACAATTT
TGCATCCGAGCTCATAAAAGTAAGGGCACCGAACCCTCAAATCAACACAGGCTGCATCAG
CTTGGATCTCCTTCCGAGTTCTACATGCAAATTACGTCACACAAGCCACAAAACTCAACC
AATGGGTATCTCTATTTCATTCAGTTAAAAAGGGTAGTTTACTGAAAGCACCATTAAGTA
GACAAGAGGAACTTCCATGTAAATTTGTTGAAATGAGAACGATAACTACGTACTACTGCA
TCCAGTATATATTGGTGTCCCTCTCAAGAATTTCTACAAACAAAAAAATAATTACGAAGA
AACCTACTTCTGGGTGAAGCAAGGAGGTACATTTATTGACACTGCTTGTTCCAGAGACAG
CATTCCATGCGCAAGCCAAAATGGAAGGTCTACTTTAGCACCCTTTTCAACCTGAACTTA
AAGAATATAAGCAATTAAACATTGGAACCAGATAAATACGCTGTTTCATCTTACACAGCA
AGAAAAGGTGCTAAAAAAAACAAAGCACCTAACTCCCAGTTGGTGTTCGGCGGTTCACTA
AGAAAAATGGCAGAGGGACACAGGAAAGCATCTAGCATTCCATATAAATTTTGCAAACTA
AAATACGATGCATCTACCTCAGGTAAATACTCCCCCATCCCAAAATAAGTGTCTCGGCTT
TAGTATAACTTTGCACTAAAGTTAGTATAAAGTTGAGACGCTTATTTTGGGACGGAGAAA
GTATCATTTAACTAGTCAACGTATTTTAAAAGTAATTTGCTAAAGAACAAACAGATAAGA
GGAAGAATTGGCAGCAGTTGCCCATTAGCAGGTTTAACATAGCAGTTAAACATAAATAGT
ATGCACAAATGCCATCGGACAGATGCTTACACTAAGCGTCAAAAAAGATGCTTACACTGT
TTCTCTCCGCGCCAGGATCCAGTAGACCAACGCCATTTGCAGTTACTTGGAAAACAACCG
AAATAAGCTGCAATTACAGTAGAGTATTCATGCCATCTGAGCAAGCATAAATGAAGCAGA
GGATAACAGGAGCATGGTTACCTCCTCCTCCATGAGGATGTCGGCAACGTCGTAGTAACA
AGGCATTTCGCCAAGTGGGACAGATCACCGTTTCTTATTCTCGACCCTGCATGAACAATT
TGCAGTATGCCGATGAGAGAAAGTCCAACTCTCTCACCAAATTTGGCCTCCTATATATAT
ATATATATATATATATATATATTCTCATGTGTGGTAATATTCTAAGGCTCCATTTTGATG
TTGACGTTGATGTTGATGTTGATATTGAGGGCCATGGAACTGAATTGGTCCCAACATCAA
ATCTCGCAGACATTGGTACTATTTAAATTGAACCTGAACTGTGTTGTTTGGATCTGTTCA
AGAATAGACACTTGGAACTCACATGGGAGACTCAATTCTGAATACTGTTTGGATTGTCAT
TGTCCAGAACGGAATCGGTCGTTTGTAAATAGGATGAACATTTTTGTACTTGGATGTGAT
GTTCAAATCTAACTTGTGTGCAACATGTGGATATATTTGTGCACTTGTACAAAAATAACA
GCACTTACACACAGCAGCGCTTACACAAGAGCAGACGCCATGGGGATGCCGGCCATGGGG
GCGAGGGGAAAAGGCCGGTCGCCATGGGGACCAGGACAGGGGCCGCCATGGGGGCCCGGG
CGTGGTGGGTGAGGGGGCGACGCGGCGGTCGCCATGAGTGGCAGGAGGCGGCGGGCGGCA
TGGGCTGCTGGCCGTGGTGGACGAGCCGCATCCGAGATGGAGGCCGCCGTCGCGAGGGGC
AGATGGGGCGACGCGTAACGCCGCAGAGAGGGAGGAGGGCGGGGAGATAAGAGGAGGGCG
GAGAGAAGGAAGAAGGGGAGGCTGACCTGCGCCGCTGTCGAGGCCGGCCTGCCTCCCGCC
GCCGCTCCTCGTCTCCTCCCGCGCGCGTCTCGCTTCTGATTTTCGGGGAGCTACCATCAC
AGCATCTCTCTTGGCTTCTGGTCGTAGATACACCTACATGAAAAAGGAAAAGGTCAAAAT
ACAGTACTTCATAAGTTTTTTTTACAATAAACTTGACTTTCTTTTGTACTAGTCCCTCTT
TCCACTTTAAAATATAAATCTTTTTAGAAATTCCATTAGCCAAATGTATATTGACATAAT
TCAGAATGTAAGTTCACTCATTTTACTTCGTACGTAGTCCTTAATGAATTGTTAAGAAGA
CTTATATTTAAAAAGAAGGAAATAGTATGTAGATCTTAAAAAAGAAAAACTTAAAGTTGA
CTTCAAGGCAAAAAAGAATTTTATTTGCTATTATATGGTCACTAGTCACAGTATTTAGGC
CGAAAATTTGCTTCTTTTTAAAAGAGTGTACATACACCCATAGTCCAAACGCCCGCCTCC
GCTACATCTTTAATACAGCTGCATATCCTCTAACAGTACTAACAAGTAGCAGCCCAAATC
ACAGAACATCCACGCGTCTATTTCCAGCCCACATCGAAGAACCATCAGTAGTCACTCACA
CAGCTAACAGCAGCAGAGCAGTTGCAAACACCTCTGTTCCAAACGATTTTGGCAATCAAT
TAACAGCAGGCGCGAAAATCAAACGTGGAGCCAGGACACTACACAACCATGCTCAAGCAG
TCCAAATGCTTACAGCATATATAGATAAGATTCGCTGCTCCATAATCCAGCAGTCACCAA
GTTTCAGAACATAACAATAATAAAAGGAAGGATCCAAATGAAGGTCTCATGCAGAGCTAA
TGGTTGAGTAAACCTTCACCCTAGAGAGCTCTGGAAATCATCATGGTCAGATTCATCGCT
GCCAGTGACAAAGCCACGCTCCTCAAAAGTCATCGGGATCATACTCGTCGCCGCTAGGAT
CATCAAGGTTACTCTGTTCGTCCGAGTCATCAACTTCCCAGTCTGGATTTTTCTTCGCCC
TCTTCTTCTTCGGGCGTTCCTCTTCGGAGCGTGCCTCCTCGGCAAAGGCACTCTTTTTGA
TAACTTCGTAGGAAGTGTTATCTTGTCCGAGCTGATACCATTCGCTACTAGAACACCCAC
CAGCTTGTCAATTCCATCGTCACCCTCTGAATACTGTATGATGACAATTTTAAGGAATGG
ACACTGGAAGGTAATTCCTTCAGTAGGCTTGCCTTATGTTTCTTCTGCTTCGTCAAGCTA
GAGACAAACAGGAAGAGGGAAAAAAAAAAGGTCCTACATGTTAGCGAACCTTTTCAAAAT
ATTCCAATTCAATAACATGACATGCAGCATACCTGTCTATGCATCAGAGTGAGCTCTTCT
AGTCTTGGTGAAAGCTGGAGGAAGCGAAGCAAAACGTAGAAGTCCCTGGTCAAATGCCAT
TCGCCAATTTCAAGAGTTACAAGGCTCTCAAACACTGAACATTTAGGCAGCTCATTTTCC
AACATAACCTTGCATTGAGTGAGTAAGCGAGCTGTGTTAGAACTATGGCGGAGCGGAAAC
AAGCATGATAATGTATACTAATTGAACAAAAATGGGCAAAGAGTAAATGACCATTGCCAC
ACAAGACATCGTGAAAATGTAGCACTACCACTTCAAGACTTTTGCACCACAGTTGACAAC
TGATGTTAAGCTATAAGAAGCCAACAGACAAAATGTCACACTACGAAAACAAACAAATGA
AACATGGCCCAATGTTTCTACAACAGCTGCACCTTGAACTTATCGAACACAATCTCTCAA
GTTCATGTTTTTTCTGTATTTCCGTTATGTTCAGTAATGGAAAGGGGTCATGCCCGGTTC
AGAAAAAAAGTTCATGTTTTTTCTGTCATTTGCTTACGCACAGCAAATCAGTAAGTGCTT
AAAATATCCATATCAAACAGAATGACGTTTGGAATCTTAGCTTTCATATTCTGAATGTTT
CCTTCATATCTGATGCACTTTTTTACCAAAATTGAAAGTTTGCTCTGTTCTAGTGTAAAC
GACTGATACAAGAAAAGTAAATCACAAAACAGATCAGTATAGAAAAATATTACGAATCCA
ACAGTTGTTTGTTAGAACTTAGACCAACATGAATGATCAGAACTAGTTCAGCATTAATGG
ATCAACTCATGGTCTCATATATATTGCTTTGCACATTCACATCCATTTCAGCAGCAAGAA
TTTTGAAAAAAAGGTACACACACAACATTAAGCCTACCACGCTAGAATTGAACTTCAACA
AACATAACTTGCGAAGAACCTCCTAGAAAGGAAACAGAGAACTTCTGATTTCAAATACAC
CTCAGTAAATACATGACTACACACCGGCAATGTAAAGGTAAGCAATCAGTCATCACCGGT
CTCAACAAACATAACACATGAAGAGCCTTTAAGAAAGAAAACTAAAAGCTACTGATCTCA
AATAGACAAATACGCCTTGAAAATAGGGTAAAATCCATTGCTGCACTTTGAAAATGTAAG
GGCACCAATATTCAATCCATCAGGGTAGGAAAATTAAGCAATACATGTGATACACGAGTT
TGTCTTGCAGGTATTTCCCTATATGGATCTTAATATCTTCAGAACATCATCCGTGAAAAG
GTAAAATAACCAATACTGACAACTTACAGGAGGTAAATTAAGCAAAACATGAAAATAATG
TACACTGAAAAATTAGTCAATCACATTATATGTGCTTTTATTTGCAGCAGAAGTGTTTAA
ATTTTAAGTAAAACCACTTTATTGATTTCCATTTTGCTTTCCGGAAATATGGCAATACAC
GTGTGCTACTATCAACTACAAGCAACAGCAACCATGCACCACAACTCTAGATACAGAGCA
GAGAGCATATAGTTTTTTTATTAATCCCTTTTCCATATAGGAGTAGAATTTATGACAAAA
GAGAATTCGTATTTTTGCAAGAAAAGAAAGTAGAAAAATACCAAACAGAACAACAGGCCT
GTCTTCTGATAAGCATACCTTTATGTCACGACCAAATAGTGCAAGTTTTTTGGCATGCAC
AGGAACTCCTGTAAACCTAGATTCACCACCAAATGTACGCCCACGAGTATCTATGTGTGC
GCTCTCTAGCGATGGCTCTAGCAATACATGTGCGTTTCTATTTTCAGCTAAAAACAGCTC
TTGTCCGATAAATTACACCTGTAAAGCGCGGCCTTACCGGAGGGATTGCAGGGATGCTGC
AGCATTTTCTTGTCCAAATAGTAGAGGGGCAAAGTCAGAGAGGTGCAACAGTACTGTAGA
CAAAAGATTAAACTAGATGATTACCGTAGATAATCACTGTATAAATACAATGTTGTGCCG
GTTCACTTTCGAAGGCAAGTCAGGGAAGTGTAGATTCACCTGATTTTGCTTCGACCTCAA
AGGATCTGGATCCAATGGATACACGCGCTCTCGACCATCCAAACCTATCTCCCGAACAAA
ACGCACAAAGAATGTCGACAAACAGGACGAGCTTGGGTTTGGCGAGCTGCTACTGTAAAA
ACGTGAAAACTGTAAAGTTTCGACGAGTTTGCAGACCGGGCTCAGTTTGCTGCGCAGAGC
AAACTCCGCATCTGCAGCCCGGCCCGCANNNNTTTTCCGTGAATCCGCAAATGTACGCGG
GGTAAGCACAAAAGCCGTTTGGGCTCCCATTTGCGGGGCCA