morexGenes - Barley RNA-seq Database

Contig contig_38672
Source Contig contig_38672
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38672 (8059 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_38672

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53829	5	3294 bp	None	Available	Available	LOC_Os09g13870.3, FRAME:+2, EVALUE:2e-157, 13109.m01279 protein lipid phosphatase protein, putative, expressed
MLOC_53830	1	490 bp	AK250607.1	Available	Available	None
CDS Structure of MLOC_53829

CDS Structure of MLOC_53830

Contig Sequence (8059 bp)

>contig_38672 8059 assembly3_WGSMorex_rbca.fasta
CGCCGTCAAATGTGGTACCAAACCTCCAACCGTTACTGCTTTAATTATTAGCTCTTTTCA
AAACTGCAGATAGTGCATAATAACCTTAGTACCTTAAAAAAAATTGCAAAATATATGTAA
ATTTGAGAGGAGGAGACTTCCACCTAGTTAACATCAATGAATTTACCCTATTCAACATTC
ATCCATATGGCTCTTAATTTGTATACTCACCACGTCAAATGTTGTCATCTGGTGCACACC
TCCACAGCTAAATCATCAATCATCAAACAAGCCACAAAATCTGGTATGTAAGGAAACCAT
ATGGCATGGCTTCGGTGGAGGACACCAACACACAAAGTGGCGAGAGCACAAGTAGGAGAA
CCCACCCTAATGGTTTTACTAAGTTGAGACTAAAAAAAGTCTTGGACTTCTGAAATTTTA
CAAACAGGGCCTTATATGGGTGGTAGATATTGGGTAGGTAGTAGATAAAGTTTGACATCC
GTGGACCCACCGGGGGAATTTAAATTTAAAACCCTCGGAATGAGCGGTGAGCTATAAAAA
AAAATACTAGAAAACTAAATAAAGAGGGATGCGTTGGTAGACGGCCCAGATACCTTTCCC
CACCCCCAACTCCCCAACGATTCCCGTCTCCCTCCGACCCGCGCGGCAGCGCACATATCG
GGCTCCGCCGGCGGCCGTTCTACATGAGTGAGTCCCTCCGTTCCACTTCTCCTTCCCTCA
CTCCCTCCCTCCGTTCTTCTCTCCGCACACAGGGCGAGAGGCAGAGCGCCGCGCGCGGTA
GCGGGGCTGCTGCTTGCCGGCGGTTTCTTTAGGTGTGGTTTGGCATTTCTTTACTGTGGT
TTCCCGCTGCAGGAGCAGGAGCTTCAGGGACGACGGCTGATGAGCTTCACGGTGGCGGCA
CCTTGACTTCCTCCCCCAAATCCCAGGTTATTTGGCCCGCCCCTAATTCTCAATCTTCCT
CTTTGAACTAATGCTTGGCGGAGAACGTGCATGCTGTTGACTTGTCATCTAAACATTGCT
GAATTCATCTTTAAAAAAAAAAACTGCTTATCATCTTTTTTTTTGAATTCATCAGCTTAA
TTTATTCAGCAAGAATGGACAATAAGACCAACTTATCATCTGTTTTCTGTATATTGCATT
CTGCTAGATGTACATGGACAACAAGACAAATATGCTAATTTATTCAACAAGAATGTGTGA
ACATGCTTAGGCTTGGAAGAGCACCTTCCTTCCTTCCGATTCTGACAACTGTTTAGGCAC
CACAGGTTGCTTCTTTGCCCATGGAACAGCAAGTAGATACGTGTTTGCGCACCGTTGGAC
ACAAAATTGGGAATAGCGTAATCGGGGGCAATTTCGGTAGATCCGGTGAAGCTGTCGGCC
GTTATTTCAAAAGAGTCCTTCGTACTCTTGGTGAGCTTCGAGATGGCCGCATTAGGAAGC
CTTGGCTAGATCCATACTAGTAAGGTGTGAGATTGAGTGACAACTACACCTTTTTCTAAT
TGTAACCTTGAATGTGTCGCAACACTCTTTTCGTGTCGGAAGGAACCTTTCATTTTATGG
CCTTGCTTGGTAAGAGTGTATATTTGGGGATGTAAGCCTAGCCTCTGCCCTCTCCTCGCA
GCTCCACGACGTCGGGCGTGCCCCACCAAACCTCCTACCCGTTCTTCCGTCGCCGTGCGT
GGGAAGCGGGCTCTGGCATGGACCATGTCTTGGTGGCAAAGGGCACTCCATCGTGTAGCA
TCCACAGATGGCACTGGACCGCGTCGGGGGTTCTGAGCGGTGGTTGGCGATGACGTTATC
TGTTGGGCGGTTAGCGAGGTGACGGTTTCCCTGATCGGCAAACTAGGGGACGGTGAGACG
TGAGACGGCCCCTTTGCCTAAGTGAAGAACAAGGTGGGTTGGGAGCCTATACGACCATGG
TGTGCTCCTTCAGCTTGGCGAAGAACGAGGTGGACACGGCGTGCTCCTCCAGCTAGTCAT
CGTGGTTGCTCTGCTCCTCACATAGAACTCCTTTCCTCCGAAACTAGGTTGATTGTCTGG
CAACCGTTCGCCCAAGTTGGGCTGAATCTACCTATATGGGCTTCTCGTCCGTGGCTACCA
ATGCGAATCGGGAGCTACTCTATCGGACCCTTCCTTTCAACGGCCATCGGACTTTCTCGG
GGGCGTTGCCGCCACTGAAGGAGCCACCCATAGCACAACATCAAGTGCCTCCGCCAAAGG
ACTCTCTCGGCACAGGCTCACCTCCAGTGCAGTGGGTTCGGATGCACCCCCATCTTGAGC
ACCCTCCGACGAACTCTAGGGAAAAGCATACATCAAGGCCACTCGTATGAGACGAATAAG
AAGAAAAAGAGTCGTTATGGCCCCATACCTGGTCGATGGCGAGATGAGCCGACGTCTGGT
GTGTAGTGGGTCCACAGCGCCCTCTTATACCCTCGAAAAAGGCTGCTTACGTACACTTCC
CTTTGGCTTCAACGACGTGATCTTAGGTTGCCGCGACCCAAAGAACCGGATGGCGTGCTT
CTCGCTCTACGCACCAGGAATTAGAAGAGGTCAACGTAGTGGCTACAAAATGGAAGACGC
GGGAAGGCGGGGCTTACCGAGCTCGATGCGGGCGTAGCCGGGGGAGCATCACCCGAATGG
GAAGGCGCCTCTGACACAGACGTCCCCACCTTGGGCACCGGCACCATGACTTTTGCCCCG
GTATCATTTCGGCCTTTGAACCTGCAAAATGCTTTCTGGAAGACCAGCCAAGACTTTGTC
GAAACACTAGGAGTAAAGTAGTGGGAAAGTTCAAGGCGGACACTTTTCTTGAGTACCTCG
GCCCTCTTGTCCTCCATGTCGATGGGAAGGGGTGGGGTTAGGGTTCCTTTGTATCCAAGA
TTTCTCGGTCTGTACCAACTGGTCCAACTTCTCCTAGATGACCTCCTCTGGTACCTCTTC
TGAACAACTCCCCGATCACATCTTGGCATGGGTCATGCCAACCTTGTAAGCCCACGCTTC
GCCCACTCCTTGATAATTGGAAACTATAGCCTGTACATATGATCATTTTTCAGTCAAGGT
TGCAAGTTATTTGGAATTGTAGGAGCATTGTGTGTACCAATAAACTGAGGAAACACAGGA
ACATAGAATTACTTACAAAACCAGTCAAGCAGAATAACAATGTTTTCATCAGAAATGCTA
CAACTTTTTTCGAGAAAACGCAAAAGCCTTGCGTTTCTTTGCATTGAAAAGGGGGGGAGT
TTACAGCCTCCGAAGAGGTGGTGACAACACAGTTACATACGGGTCTAGTGGACGTCCCAG
GTTGGGCGCAAGGCTACCCTAAGCCCTTTGTCCCCTGCCCGAGCCCAACACCTACAACTG
CAAGTATTGTGTTCCTGTTTTTGTTATTAATCCTTTTTTTTTACTTCCATTTTATTAATC
ATAGCTGTATTACATCCAGTCTATCTAGTAACTATTGCAACTTTACTCAACAATTCTTTG
TCTTGCTCCCTTTGTTATTTATAGGACATAATGGCAGATGTCCAGTTAGGCTGTTACACT
ATAAAGTCCCATGGAGCCAAAATTGCAAGACTCCACATGTATGACTGGATAATACTTGTC
CTCCTTGCTGTCCTAGATGGATTGTTGAATATAATTGAACCTTTTCACCGTTTCGTTGGG
AAGGACATGATGACTGACTTGAGATATCCCTTAAAGGGCAATACTGTGCCCTTTTGGGCT
GTTCCGGTGTGTTCTTGTGCTGCTAATTTTGGACTTACCATTGTTTTACATTATTTTTGT
GCTATTCAAAAAGATAGTCCCAATTTTGTAACTCACATGATTTGCAGGTCATTGGAATCG
TCTTACCCTGTGCTATATTTGGTGGAATTTACTTCAAGAAGAAGAATTTCTATGATTTGC
ACCATGGCATATTGGGTATCTAAATATTATTAGGCATATGAATATGTTGATATTGTATGT
ACAAGACATAATTCGAACACATATATTTTTGTAGGTATTCTTTATTCGGTGCTCATAACT
GCGGTGATTACTGATGCAATTAAGGATGGAGTTGGCCGACCACGTCCTGATTTCTTCTGG
CGATGTTTCCCAGATGGAAAGGATGTAAGATTACTAGCCAAGAACTTCACTTTTTCCAGT
CACAAGTTCATCTTTGTTGACCTGCCCATTGTTCAGTTCTTATCATCTGTGGAGTCCATA
TTTACCAAAACTCATCGAATGACTCTTTTTCAGCTTTATGATAATGTCACTACTGGTGTT
CTTTGCCATGGAGAGAACAGTGTCATCAAGGAAGGTCACAAGAGCTTCCCAAGTGGACAC
TCATCATGTAAGTCATTTAATATACCTAATGTTTCCTTTGGTACTACTGGTGTCACTCGG
TTACATACTTGAAGTCGTTTTTTACACCCTTGTGATAATCCTTTTTGACACAAACCGTGC
TGGGACCTGGGAATGAGTGATGGCTACCTGTTTGTTTGTGCTTTGTTGGGCTGCTTGAGT
TAGCTGGCTTATTAGGAGGTGTTGTGCAATGCAAGGTGCCTAGTAGAGAAATAAACCAGT
TTTTCCTTAAGCACTGGTGCTTATTCATAGAGGCTAGATGCTTAATTAGGCATCCCTCCT
TTAGAAATAAGCACTGGTGCTTAAGAAAAAGTTGGTTTATTTTCCTAAGCACATCTCTAA
GCACCTTGCATTATACAAGGCCTTAGTGGCAATCGTTTAACCAGGGGAACTCTGATGGGT
GGCTAGGCCTGGTGCATTGGCTACGTTGGTGCGATGTGGCAGCGAACCAGGAACTGCCCC
ATTTCAGTTTAGATGCTTTGATTGCTGCTTGGTGTAGTAGTTGTGCGGTAACTAGTTCTG
GAACTACTCCACGGCATAAAAGCATTGGGTTTTGTCATGTGTATCATTTTGTGGAGGTAT
ATACATACATCTTATAATGGACAATGCACATAGGTCATGTGTTTGATTAGAGACCCCACA
AAATTGGCCTAGCCTTTAGCCTTGTCTCAAGGTTGCAGCCAAAACAGTGTGGTGAAATTC
AGTCCTATAAGAAGCATTTTTCTAGGTAAAAGAAATAAGTTTTCAGGCCAATTCAGTATC
AAAACTAGGGGTCTCAGTCTTTTATTACCCTCATATACAATCTTTATATGTGGTCGTGTT
GTTACAATTGCGTCAAATAGGCCGTGGCTAGATCAGCTAACTAGACCATCGATATAATAA
TCATGTCTTCTTCCACCTTTATGCTAATAATCAATCTATTCCAGGGTCTTTCGCCGGCCT
GGGCTTCCTCACGTGGTACCTAACTGGGAAAATTGCAGTTTTCGATCGTAAAGGCCATAT
CGCAAAGCTGTGCATCATTGTTCTGCCTCTACTTGCTGCCGCGCTCGTAGCCGTTTCTAG
AGTGGATGACTACTGGCATCACTGGCAAGATGTGTTTGCTGGAGCTATCATAGGTTTGCT
TGCCATTTGTCGTTGTTGCGTAAACTGGTTACACAGGTGACAACCTTCTAAACGCGCATG
ATTGATTAATAAAAAATATACTCATGTTGCCCTTTGCAGGCCTCACAGTGGCTTCATTCT
GTTACCTGCAATTTTTCCCGTACCCTTTCGACGCAGACGGTGCCTCCTCCTCCTCCATTT
ACCGATCGATTTTTTGGTCTTCTGTGGTTTCTCAAAGATAAAACTTGACAAGTAGCGATT
TCCATTGCAGGGTTGTGGCCTCACGCGTACAACACCCTCCAGCTAGCCGAGGCGGGCATT
GCCGCAAACTCCTTCAGCATGCAGCCCACGGAGGAGACGGTGGAAGAAGGGCAAGGTCAG
GGTGGGATCGCCCTGAGAGACGCCCTAAGACGTGATGAAAACTAGATCCTGAGAGACGCC
CTAAGACGTGATGAAAACTAGGACATCCGACGACACCCTAACTACAATGGTTAATGTTTT
CTATGCACGTCGCAGGCGGCTATCTGGGAGCTGTTTTTCTCATGCACAGTTCGGTTGGTT
TGTTGGTGTGTTACATACCTGCTGGTGTTTTGTCACCTCTATGTATGTATGGGTTTTCAC
CGTTTGTTTGTGAGAGGTTGATGACTGCATAGTTAGGCCAGTGAGGATCTGGGCTGTACA
TTACTAGTTAGTGCTTTAGTTGGTGAGGCCATTGTGCATTAATTTTTTCTTGCTTTTCAG
CAAGCAGTATGTATATATGATTGCTTTGCTTTGCTTTGCTTTGTTATCAACGTGTTATTA
TGATTGGCTGCATTGATACATATAATAAGTTTTCTTTTGGAAATATCTAATTCAGGAAAG
AAAGAAAAAACTACAAACATCCAAGTTATACTCCCTCTGTCCAAAAATACTTATCATACT
TCATTATTTCAATGCAAGGAAAATGAATTTGTTGCTTCAACCTTCCCAGAAATGATTTGT
AAACCAACAGCTTTTGTTAAAAGCCATTTGCTCAAGGAAGCTATTCCAGTTCCACATTGT
CGAACATAAACGCTGTGATCTATGAAAACGCTGCCAAATCTCATAGATAAATAATAGCGA
TCCATGTAGTATAAACATTCAACACAGAACGAAAATTGACAGAGATAACTCGAGACAATA
GGCACTTAGAATCACGAAGCAAAGAACCTAGTCATACAAAACCCAGTCCTCATACTACAA
GAAGTTCCAAAATTATCTTGGTACGTTGGTGTCTCACCACCCTTGTAAAAAGACTTAAAG
ACACATATCATGGGGGTAGCATAACTACTGGTCGCTGATGGTCACTTCAACCTCGACACC
GGGCTCAATGGTGATAGAGGTGATCTGCTTGACGACGTCTGGGGAGCTGACGAGGTCAAT
CACCCTCTTGTGCACCCGCATCTCAAACCGATCCCAGGTGTTGGTACCTGTTCACATATA
AGAGGGGATAACATTGTTAGGCTTTGTTCACTTTCAGATCAACATGACAAAGTATGACAG
ACAGTGTTACAGAGGAATGATTTGTGATGGGCTGAGCATCAGGTTTAAAAAGCTCGATTT
TGAAACATCAAATGTATCAGAATATAATCAAATGAATCATCATTTGCTCAGCCAATCTAC
ATACCAAGGGCAACCACTTCATTCTGGATAATAAATGTGCAGAGGACTACGTACATTAGA
ACAAACCACCTGCATTACTTCATACAAGGAACAAGTGCCAAAGAAGAAAACAAACGTCAG
ACAGGCTAGCCATCAGTCTTAAAAAGCTCGATTTTGTATTCCTCAAAGAAAATCTCAGGA
ATATGTTGTCTTAGCATCATCTGACCAGCCCGTCATAAAACACAATCAGAAAATAAACAC
CAGAAATGAGCAACCGCTATCGATAGGGCCACTGATAGATTAAGGGTGCTGTGGATTTCA
ATTGAGAAACAGACGACCCACATGTTGGATGACCAACAACCAACCACGATAGACTCATCA
TAGTCTAACTTATTACTAGCACCGGACGAACCAAAGCATCAGTTTTAAAAAGCTCGGTTT
AAGATACTTCAACGACGTAAAAATCTCAGTAGCATCTCCTAGTAACATCACATGCTGGGC
TAACGTAATACTCCAGCGGAAACATGGCTGAATAAGCAAGAACAGAACATTACGGCGATG
GCGGCGTGCTGAGCATCAGGTTTAAAAAGCTCGATTTTAGATACATCAAAGGCCGAAAAG
GGCCTCGGTGGTCTAAATGTTTCGCATCATTTGCTTGGCACATCACCATCTCAACGCCAA
TTCATCATCATCCCTAGGGACCGACCAGGCAAACAGAGATCCAGGAACACCCGCCCGTGG
GTAACTGAACGCGATCGATCGATCCAACAGATAAGCGCGAGAGGGAGGGAGGGGAGGGGA
GGGGGGGATACCTTCTCCGCAGGGGGATTTCCTGGTGGTGATGTTGAGCACCTTGGTGGG
CATCCTGACGGGGCCCTTGACCTTGAGCTGCTTCTCCTTGGCCCCCTTCACCAGATCCGA
GCACACTGTCCACCAACACGACGGCGAAGGACGCACGGATCAGATCGCCGGAGGAAAAGA
AAGCAGTTTGGGCGGGCGG