Map Locations of contig_38661 (7903 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38661

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53817 1 2371 bp AK357019 Available Available None





CDS Structure of MLOC_53817






Contig Sequence (7903 bp)

>contig_38661 7903 assembly3_WGSMorex_rbca.fasta
ACCCTAGGCGCGAGCGTAGGGGAGTTTTCGTACTAAATCCAAGAGTTGTAATAAACTAGT
GCCATTGATATTACTCTTTAAGAATAAATATAATGAAAAATAATCTTCCACACAACTTTG
CATTAGAATTTCACTTTTCTAGTATTCAGACAACTATCATATAATAGTGTAATTTTCGCA
CATATTACATGGTGTTTGTGTGTATACATTTACGCTCATCCAATATCACAAAAATATCTT
CAAAAGATTAAATTAAAACCAACTAGGAACAAAAAGAAATAACAAAAGGAGAACGCATAA
AAACCAGAAAAACAGAAGAAAGAAATGACAAAGGGAAAGATGGATGAAATGTGCGGTACA
GGTAATGTGCTTACGTCCAGTAGCAAATCGATTGACCCAAATATGTGGCCGGTAAAAAAC
AACAGCCCAAACAAACTCACAAGACGATCATAAAAAAAGACACAAGACGAATCTTAGAGC
AAGATTCAACGACCAAGAAATTGACTGATCCACATTGGGAATTCAGGCGACTTATATATA
GTAAAGTGTTTATATATGACAAAAATATACTGTTGAATTTGTGTTAAAAAAGTTTTAACT
ATATAATTTTCAAATCATCAAAATATATAGTATTGAGACCATCTCCAACAACTCGAGGAT
GCGCCGCGCTAAAAAAAAGAGCGCCAAAATAGCGGTTTAGCGTGCGTGCTAACTTTTTAC
GCTGCAAAATTTAACGCTCTGCAGTAGCGCTTCAACGGACATGATAAAAATACAGCATGC
ACGTCCAAACATACATAAAATAAAATCAATAAAAATTGCTCATCGACAAACATAAAATTC
AAATTCAAACTGGAAAGAAAATTCATGTTCATAAAATATGCTAATAAAATAACCTAGACT
ACTCCTCCTCATCCTAGGTGGTGTAGTACCAACTCGTCCTTCCACCGAGGATCGTCCGAG
TCCCAACTCGTTTCCGGATTGTCTATCTGAAAAATCATCAATGCCTTGCTTTTACGCTTG
TCCTGACGACGCGCAATTCGCTAAACCCTCTTTTGGGTCCATAACTCCTTCTCAGTGACT
ACATCCTCCAAAAGGCACCCACCACTCCGCCATGACGGCCTTGTCCTTCCTGGTGATCAT
AAGGAGGAGCTCCCGATTGTGCTGGACAGGGGGTCCTCCTCGGTGACCAGACGCGGGGAA
AGCGCGACATCCTGCGCCTGCTCACGCGTGAATACATTGTTGAAGTTCATCTGCGTCCGA
AGCCGTTCAGGCGCCGTGCCGCCACGTCGTATGCACGGACAACCTTGTAAATGGTGTTGA
ACGTGCCAAATCTGAGACGTGTGTCACCGGAGCGGATCTTCATGTAAAACACGCCGGAGG
GACGGGCATGGACGCTACGATAGCCTGAGTTGTTCCAGGACACGGCGGCATGGCGAGGGG
CTACGAAACACCGATACGACGACACTGATATGGCGATACGGGTACGACGATTTCTAAAAA
TAACAATACGACGATACGTCAAACATATATAAATAATAATAAAATAACATATAGTAAAAA
CTAACATAATAAAATGTATGAAATAAGAACAAAATGCCGCATCATTTGTCGTTTAATTGA
TTTCATACCTTGGTGTTTCCATTCTAAAAATCGCACTATCATGTTGCCTAATTGATTCCA
TACCAATCGCCGAGGGGTGGCAGCGACGGGGAAGAAGGCGCGACAGCGACAGGGCGCGGC
GACGGAACGCGGTTGGTAATGTGTGGGAGTGAACGGTGGCGGCTGGTAATCCCGCGCGCT
GACGGACGCACGTTAAAATTACGGCGCGGGGAAAAATTAACGGGTAGTCGTTTCGTGCGT
CTTCTGGAATGCGTCCTGCGGCCACTCGCGCGTTAAAACCGTGTTTTTACCACGCGCGTC
ATCGGAGATGCTCTGACATAATTGGACTTTGCTAGACGTACGGACTTTTACGGGAGATTT
ATAGACTGCTTAACATCGATTTGCCGGGGAGTGATTAAGGTGCACAGCCACCGGTAAAAT
TCAGGGGAGGGGCCAATTAAAAGAACGCATAGTCCCCAGTCCGTAAAAACTCTGTAAAAT
GTATCCGTACGGCACTATTGGACATAATTTATGATCAAAGTTGATTTATGGAATCCGTGC
GCGCTATTAATGCAATGTTTGATGACGTGGCTTCTAGTGTATGCAGTTGTGTCCACATCC
CCGTATTGCTTTGCTTTCTAGCCATCGCCGGAGCAGATTTCCTGCTTGATACTGGTGACA
AGCCAAAGATAGGATGGACTGGAAGTCCACAACGATGGCGAGTTAGCGACCAAAGGAAGA
AGACGACGGATTTGTCCTGTCCTGAGTCATGCACATCTCGAGTTCACGGTCTGGAACAAC
TCGTCTCTTGCATCTGCACGGACAAAGAATGCCGCGCTCCACGGTGCAGCTGTGCTCTGC
TTGACCCGAAGCTCCAGGCCATGGAGTCCCAAGAAAAACCAGCGGTCGCGCCGAGAAGCT
ACTGGCGGTGGAGCAAGGATGACTTCTTCCCGGAGCCGTCGTTCGCGAGCTGGGGCGCGT
ACCGGGGGGCGCTGGCCGCGACGCCCGCGCGGCTCAGGGACCGCCTCCTCGCCGGCCGCT
CCACCGACGCCGCGGAGCTCGGCGCGATGCGGCGCCGGAGCGAGAACGAGATGCGCCGCT
GCCTCACGTGGTGGGACCTCACGTGGCTCGGCTTCGGCTGCCACCTCGGCGCCGGCATCT
TCGTGCTCACCGGCCAGGAGGCGCGCGACCACGCTGGGCCCGCCGTCGTGCTGTCCTACG
CGGTGGCCGGCATCTCAGCCATGCTCTCCGTGCTCATCTACGCTGAATTCGCCGTCGAGA
TTCCCGTGGCCGGCGGCTCCTTCGCGTACCTCCGCGTCGAGCTGGGTGACGTCGCGGCTT
TCGTCGCGGCCGCTAACCTCATCCTCGAGACCGTCATCGGCACGGCCGCGGTGGCGCGCG
CCTGGACGTCGTACCTCGCGTCGCTCTTCAACATGCCGGTGAGCGCGCTCCGCGTGCACG
TGCCGTCGCTCGGTGACGGGTACAACGAGCTGGACCCCATCGCGTCGGCGGTGATCTTGG
CCACGGCGATCATGGCCATGCTGAGCACCAAGGGCAGCTCCCGCTTCAACTGGGTGGCAT
CAACGGTGCACCTGCTCGTGATAGCGTTCATCATCGTGGCCGGGTTCATCCACGCGAAGC
CGAGCAACCTGACCCCGTTCGTGCCGTACGGCGTGCCGGGCGTGTTCCGGTCGGCGGCGG
TCGTCTACTTCGCGTACGGCGGCTTCGATAGCATCGCCAACATGGCGGAGGAGACCAAGA
ACCCGTCCAGGGACATCCCGCTGGGTCTGATCGGGTCCATGTCGGTGATCACGGGCATCT
ACTGCACGATGGCGCTGGCTCTGACCATGATGCAGCCGTACACGGCGATCGACCGGAGCG
CGGCGTACTCGGTGGCGTTCGGCGCGCTGGGGATGCGGTGGATGCAGTACGTGGTGGCGG
TGGGCGCACTCAAGGGGATGACGACGGTGCTATTAGTCGGGGCACTGGGGAACGCGCGGT
ACGCGACCCACATCGCCCGCAGCCACATCATCCCGCCGGTGTTCGCGCTGGTGCACCCGA
AGACCGGCATGCCGGTGCACGCCACGGCGCTCATCACCGCCGCCAGCGCCTGCGTCGCCT
TCTTCTCCAGCCTCGACGTGCTCGCCAGCCTCCTCTCAATCAGCACGCTCTTCATCTTCG
TCATGATAGCCAGCGCGCTCCTCGTCCGGCGGTACCATGCCAGGGGCGTGACGAGCCAGG
CGCACGCGCGGCGGCTCGCGGCGCTCGTGCTGGGGGTCATCGGCTCGTCGGCGGGCATCG
CGGCATGCTGGGGCGCGGCGCCGGAGCGGTGGGAAGGCTACGCCGCCCTGGTGCCGGTGT
GGGCTGCGGCGACGCTCGGCATCCAGCTGCTGGTGCCCGTGGCCCGCACGCCCAGGCAAT
GGGGCGTGCCGCTCGGGCCGTGGCTGCCTTCGCTCTCCATCGCCACGAACATCTTCCTCA
TGGGCTCCCTCGGCGCGCAGGCGTTCGTTCGCTTCGGCGTGTGCACCGCCGTCATGTTGC
TCTACTACGTGCTCGTCGGCTTGCACGCGACGTACGACGTCGCGCACGAGGAGGTGGAGG
AGCAAGGGGTGGGCTACGGCGACCACGCTGCGGCTGATGAGAAGGCGGCGGCGGCGGCGG
CGGCGGGAGCGGAGGCTGCCACCGACGTGGAGAAGTCTGGCGTCGGAGCTGCTGGCCGCT
AAGATGTGGCTGGATTTGGTCCGCCTCGATCTGGGTCACCGTGATAGAGAATGTACTGTT
TGACATAGACATAGCACTGCTTCACAACGAATATGCAAAATTTACAGCAAAATAAGTAAG
TGGCTACTACTTCATCCGTTTTTTAATATAAATCTTTTAGAAAGTTTTATTAGAAAGACT
GAATATGAATGTATATAGATATATTTTAAAATACAGACTCATTTATTTCTCTTATATGTA
GTTTTTTATTGAAATCTTAAAAAAATTATATTTAAAAACAAAGGGAGTACGTCGTGGCAT
TTCCATTAGCACGTTAGCTTAGCTATATATGTCAAGTCATCTACTCCCACCGTTTCTAAA
TATAAGTCTTTGTAGAGATTTCACTAATGAACTATATATGAATGTATATAGACATATTTT
AGAGTATACATTCAATCATTTTGTTCCGTATGTAGACACCTAGTAAAATCGCTTAAAAGA
ATTATATTTAGGAACGGTGGGAGTAGATTTTAAATTTGGATTAGCAATTTCCTGGTCGTT
CATATTAGCACGAAGATGTATATTGTTTTCACAAAACCCTATTCGCTGCTCAATGCGGTG
AACCGTCGCCAGCATCGCCCAAATTTTCCTTTTTTCTTTCACAAAAAATGTTCGCATCTA
ACATAATTCATTAAAAATTTAGAAACATATTCTTGTTTGCAAATTTTGTTTGGAAATTAC
AACAAATCTTCCGAAATTCCAAAAAAATAAATTAGAAAAAATGGTCACTTATTGTCAAAA
ATTGTTTGGAAATGCGAAAAAAATGTAATTTGAAAATATTTATTGTAGTTTCGTAAAATA
TTACCATTTTAAAATATTGTTCACAACTTCAAAAAATGTGTATTGTTTCAAAATTTGGTC
ACTTTTCAAAAAAAATCTCCAATGCTCGTTCGAAACTTCAAAATTGTTCGAATGTTTCAA
TAATTGTTCCTATCTTAATACAAATCATGTATTCAAAAAACATTTGGGTTTTCAAAAAAA
TATATTTTCAAATTGTTCTTGGTTTCAAATTTTGTTCTTCAAATAGGAAAATAAATTGCG
CTTTCAAAAAATGTTCATGCTTACAAAAATAGTTTGAAAATGATAATTTGTTTGATGTGT
TCAAACATTGTTGGATTTTCAAATGTTATTGATGTTTGAAAAAAAAATCCAAGACACGTC
CAAAGAACTTAAGTGTTCGGATCTAACACTACGATCAGTTCTTAATGATTCGACACTCTC
AATGTAGACATATGATCTATAATTCTTATGCTTGGCAACGCACCCTCAAACTAGAGAGAT
CACGTGTTCGACCCAAGTTGTGATATTTTTCAACGACATTTTTATGGCATCGTTGCACGC
AATTTGGACAGCATGATTGGAGCTAGTGCGTCTGTCACGACCCTATTTGACGCAAAGAGT
TCCCATTGTTTTGTGCACGGAATAATTTACCGATCTCTATTTTGGGTCAGTCAATTCCTT
AAAGGGTTGACTTCCATTCCTCCCTCCTTTGTTTTTATGTGGGTTTGCTTTTCCTTTTTT
ACCTTTCTCTATTAGTTGATTTTTATTTTTATTCAATGGATACTTTTGAAATGTTGGATG
AGTGTAAATGAATACACCCAAATACTATACAATATGTGTGCAAAGTGCACGTTTATTCTT
TACATTGTACAAAAAGTACGATTACGGTGCAAAGTTGTGTGCATTTTTTTTCAATTTCTC
ATTTCTATTTTATTTTGATTTGGTTTTGTTTATTATTCATTTTCTTAATTAAAGAAGGGT
AATAACAATGCGACTATTACATATTTATTCCTGCATATTTTTTAGAAAAGCGCAATTTTT
GTGTATTTTGTGTGCACATTTTATCTTTGTTTCTCTTAGATTTTTTTTTTTCATTTTTTT
CTTCTTAATAGGTAATACCAAGGTCGTTCCTTATTTTCTTCTTATAAAATTTCATTTTCT
TTTATTTTTTGGCTTCAATATCACTTTCTTTATTCTTAAAGAGTAATCCAAAATCACCAA
TTCATTCTTTCTTACAAAACTTTATGATTTCTTTTTGCTTCTGCTGAAAGGGTAATAACA
ATGCCACGAATTCATCCTTTCTTAAAACTACATTATTTTTAGTTAGTTTGAGTTTTTATT
TAATTTTACTCTTGTTAAGGAGTAATGCAAATGTCACTAGTCACTCTTACTTAGAAATCT
TCTTTAATTTGGCTGTATTTTAGTTTAAATATTATTTCCATTCTTCTTGAAGGGTAATAC
CAATGGCACTAATTCATTTCGTCCTAAGAAACTTCTTTTTTTTGCGGAACTTTCATTATT
ATATTCTTATTCTTGTAAATTATATTAAAATACATTTTTTTTGTAATTTGTGTGTGAATT
TTGACATTGTTTGTTTCCATTAGTTCTCACTTTCTTCCTTCTTAAAGGATAATACATATG
CCACTAATTTATTGTTCCTTAAAAACTTCAAATTCTGTTTTTGTTTTAGTTTATATTTCA
TTGCTTTCTTATTTCTTTCTTCTTAAAGTGTAATACAAATTCCACCAATTCATTATTCCT
TATAAAACTTCTTTATTTTGTTTTTTTAGTTTATATCTCATGTTTCCTTCTTCTTTGAGG
GTAGTACCAATGTCACTAATTCGTAGAAACTTCATTTTTTGCGAAAATTCTACTATTTTA
TCTTATTCTTCCAAAGTACTAAAAACAACAAATTATAATTTTAGTTCTAATAAATTGGCA
TTGGTGAACACCTTAAAAAATGAATGAACAATAAGAAAACCAAAAAAGAAAGTTTCTAAG
GAAGAATGAATTAGTCGCATTTGTTATACCACACAAGAAGAAAGATATATATAGAAAGTA
TATTCATCACTCAGGGTGCAGAATAAGTTATTCTTCACTTGGGATAATCTTACGACCAAT
TTCAAAATACATTACGTTTGTAATACAAATAGTTACATTTATATAGATTTACTACGTAAA
ATTTGACATAAGAAAAAACAAAAATACAGGTCACAAGGCGAGAAAAAAATGCATTTTATG
TATATTTTACACTATTTTTTTGTTTGAAATTTTCCATGACATAAAATATTTTTTATGGTG
ATTATATATTTTCTTACAATCTATTTTTACGTATGAAATAAGAAAAAATTTACGAAACGT
AAAATATGGTGCATTGATGTTAAAATTGAGGGGAGTGAAGAATAATTATTCCTCACCCAG
GGTGACGAATAGTCAATCTGTATAAAATTGTATTTTCCAAATGTTCGGATTTCTACATCA
CATTCGAGTGCTCTCGATGCCATGTCCAACAATTATGTAGTTTGAGAGGTGATCTTGACT
AAACTGCGTTGGGAACCACTGCAAAGGAAAAAAAATACAAACATTGTCAGCTAACAACTC
ATTATGGGCACTAAAAGGTGTTGGAAATATGCCCTGGAGGCAATAATATATTAGTTATTA
TTATATGTATTTGTTCATGATAATCGTTTATTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGTGTCGATACATAGACAAAACACTGGCCCTA