morexGenes - Barley RNA-seq Database

Contig contig_38653

Source Contig contig_38653

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_38653 (1898 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_38653

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53804	2	1323 bp	MLOC_53804.1	Available	Available	LOC_Os02g38840.2, FRAME:-3, EVALUE:3e-79, 13102.m04281 protein glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
MLOC_53805	1	139 bp	None	Available	Available	None

CDS Structure of MLOC_53804

CDS Structure of MLOC_53805

Contig Sequence (1898 bp)

>contig_38653 1898 assembly3_WGSMorex_rbca.fasta
CCCGCCTCCGCACGGCCCGCGAGAGAGTGCCCCCCCGCCGGCCGCCCCCGGATCCAGTCG
GGCTTCGCGGGCCGGACCCTCGAGGGGCGGCGAGACAAGGGAGGGGAGGGGGTGGGTGAG
TGGCGGCGCTAGGGTTCGCCCCCCGAGTCGTCAGGGAGAGCGACGCCGGGAGGGGGGTGG
GGGGGAGTCAATCGGAAAAAATAATAATCACTAAGTTTCATTTATTTGTAATCGTAAAAT
GGTATACTGTTTTGAAAAGCACAGATTGCTTATTACAAATGCTCTTCCGTATATAACACA
CAGAGCAAGTAATTTCCCTCTGAAGTAATTCTCTGTAAACCCAGAACACTCCTGTTCTTA
ACCGGCACTTGGTAGCGGCTAAAACTTTGCAAGGGTTGGTGGTGCCCAGACATAGCCAAG
AGTCGGCACGTACCCCGTCCTCTTGCTCAACTCATCGGCCTCCGGAGGACCCCGGGTTCC
CGGTTGGTATGGTAGAGCCTTGAACCTGCCACTATCGATGTCGTGCAACAAGGGAGTGAA
GATCTGCCAGGCAGCCTGTTGAAGCAGTGTCACGTTCCCAACAGAAATTCACAGCAAAAG
AAGCACGGATGTAAACGGTACAGTGTACAAACCTTCAGCTCGTCTCGGCGAACAAAGTGC
TGCTGGTCACCTCTTATCCTGCCAAAACATTGATCGATATCATTGAGTACATTGAGAGCA
AGGAAGAATGTTTGTTCTTTCAGACGGAAGGCGAGAATTTTTCAAGTTATATATGGCGCC
ACCTATTTAATTGATGGGTAAAGGGCATGAAGGCGTGCAGATAATTGAATGTGTCACAAA
CAAATTTAGCAGAAGATGAAGGGTGGACCGGCACATACGTGTCCAAGATAAGACGCTCGT
ATGCTTCTGGGATTTTTATATCTTGGTACCGTAGCCCGTAGGATAAATCCAGCTCGCTTT
GTTCTGTTGCCATTTCGAGCCCTGGTTTCTTTACCTGCCGAAAGTCATCAAGTTTGTTTA
GACAAATATCAGTCGGCAGCTACTGTATCTAGTTCTGAACCTTAGACAAGCAGTTGTACA
TACAGTTAATTTCATATACATGGCTTCCGATGGCTGCAGGCGTATGACAAATTCATTTCT
TCCTTGTTTCTTGCCTGTACAAAGGTAAATAGCAATAAACACAGAAGAGCTATTTTGATC
CAATAAAAGAAAAAATCAACTTTGATACTAACAAGAATAAGATAATATTTTGAGACAAAC
AGGTTCATAACAATCAACAGCATCGGAGATGATTTGGCACCATTTTAGTTGAGGCTTAAT
ATTACCATGGGGTTCAACTTTGCGCAAATGATATAGTTAAAATGATAGATTATCCCTAAC
AGTTCTAAAGAAACTAAATGCAACATTATGAAGCATTTCTTGAGCTCTTTTACTCATGAG
AAGATGATCAATTGTCGTCAGTACTAAACATGCATAAGCAGGGTTAACCCATGTCAAAGA
AACAATGATTATACAAATCAGTAAGGTCAAACTGAAAGTACTCGACTTACTTGAATTTAG
TGGCCTACCATGTAGCAACTCATCCCATGCTTATATATTGTAGTAACTTCTATAGGTTGT
GTGCTCATATTACGGGTATCACATCATTACACGTTTTAAGCAAGTACTCTTCATATCAAC
ATATTGGGCAGATCTATAGTGGGGAGTTGGAGTATTCTTTTTAGTAGTTAAGCACTGTAA
AATCTACAACATCAATAAATTTGTCTTTCCTACTGTTCGCCCACCCCCCCCCCCCCCCCC
CACCCCCCACCCCCCGCTCCACCAGCACCTCTCACGGCCGCCGATATGACCGCGACTAGA
CTCACAAATACTACGTTCTACGAGCTCACCTGCATATC