morexGenes - Barley RNA-seq Database

Contig contig_38551
Source Contig contig_38551
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38551 (8987 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_38551

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53678	1	1049 bp	AK354951	Available	Available	None
MLOC_53679	1	2085 bp	MLOC_53679.1	Available	Available	LOC_Os06g39270.1, FRAME:+2, EVALUE:0.0, 13106.m04070 protein UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
CDS Structure of MLOC_53678

CDS Structure of MLOC_53679

Contig Sequence (8987 bp)

>contig_38551 8987 assembly3_WGSMorex_rbca.fasta
CAATCCCCCCCCCCCCCCCCCCTAAACGTTTGGACATTGACCCATCATCCTCAAATGTCC
GCGTCCATAACTGTATACCCCCCCTAAATCCATGCTATCCATGCAATGTGAGAGAAACTT
CGCAGATGATCATACCAAATGAAGCAACAAACATGGATCAACATAATTCCATACAGGCAT
AGCATCATAGTTCATCGGACCAAAATACATAGTTCATCGCCGACAAACGGACATATATTC
AAACTAAAGATAACTAAAACTAGAACGGAGATGGACAGTGGCACCGGAAATCACCCTTTC
CTCGCCCTTGCCCTTGCGGTCATCGGTGTGTCTGTAGCCCTATGTGTAGGCGTCAGCGGC
ATGAGGGGCGTCGTTGGAACCATTGGAGACATCGGAGTTATCAGACGAGGAGATGATGCC
AACCATCTGAAGGACGGTCTGCGCGTGCTGGCGAAGAGGACCGCCGCGAGGAGCTGCTCC
TCCGCATCGACCACTAGCTGGAAGTGGGACCGGTTAGAGGAAGCCCCCCTGCCGCTCCCC
TCTCACCCGCCCACGTGTGGCACGCGCCTTCGATTTGGGCGTTCGCATCCATGGCGGCAC
GGGCCCGGGCATGAGCACGCACTGATGACCATGCGGAGCAGCCGCCAGAGGGGAGCGCGT
GACAATGCGATGGACCAGCGTCAGCGTTCGCGCTGTATTGCCGGGCGACGGGGAACTGCG
GACCTCGAGGTTCCGCCCCTATCCACTCGTGTCCGCTGCAACGCGATGTGGAGGGTGTGG
TCCTTGTTGTCGTCCGCCTCCGCCTTGCGGATGAGGGCGTCCCAATCTACTGGGTCGTCC
TCACAGCCGAATCTGCCGCTGCTGCTGGTGCTCGACAGTGGAAGAGGAGGATCGACAAGA
AGAGAAGGGGACGAAGAGCAGAGTGGAGTGTGAGAGAGTGAAGACTAGGCTTTCGTCCTG
ATGGTTTTTTTGTGGAGACGGGGGTGGGGTCGGCGTGGGCCAATGTTGGCCGGTTCCGGT
CCGATGTGGTAGACGCATCCGGTCCGCCCCATATATAGGCTGGATATGAGGAGTGCCAGT
CGGCCCGGGCGGATAGCGGCCATATGAAGTGGCTGGTTGGGTCAAGAAAAAACTGACCGG
TCACTAACCGGGCCACCCGCCTGGTCAAAATAGGGAGTCCGGCCGTAGATTCTCTTAATG
TCTTCTTGAATGTTTTGTTCGATTTCAATTGTCTATCACCTGTTGGGATGTGCGGATTTG
TTTGGTTTATCTGTTGGGATGTGCGATTTGTTCGGTTTATCTGAAGAACGTCAAATAGGA
TCAATAAATGTTCATTTCGGGCTGCACACTGCATGCATGTCCATGTTCGGATATGCCCTT
AATGGGCATGAACAATTGCTCCTACCATTTTTTGGCACTCCGTTCCATTACTACCTGATT
CTTTCTTTATTACATTATGCTTAGTGCAAATAGTTAACAAATCAGCACATTCTGGAAAAT
TAGAATTATATGTCTGAAATCAGTTGCCACTTTGAGCAAAGATGGGCAGTCTTCTTGTAA
ACAGTTGCTGCCAGTCAATATTGGGAGCAAGAAGATAAGTTAGAAGAAAAAAAATACTAA
CTAAAGAATAAGCTTTCAACTTTCAGCAGCTCATTTTGTAAGCTATGAAGATTAACGAAG
ATTGAAATGAACTTTTAATATTTCACTGGAGAACTTCGGCTACCCTATCCCTCAACAACT
TCCCAGCTTAAACGGCAGGCAGCACAAATTTTAAATATCTCTTCGTACGATGTCTCATCG
GCTGTAGGCATACTGGTCTCTCTGGCTCCACTGTTTATACTCGTGTTGCGAACCTTGATG
CGCAACAGAACTGTGGTGAAGATAGTTAGACGCCATGGCTGCGGGAGATTTACTAGACAT
AGGCTGAGAATAGATTGATTCTTCTTGCTCCTGCTTGCAATACGACGTCCCAGGTTTTCT
TGCTGGCCGGCCAATCAAATTGTCACTGCCTTGTTGCAACGTACTGCTAACATCCACAAG
ACAACCTCTATCTATTCTAAAAGGAATCCGTATTTTCATTATCATTGGCATAGATTTCGA
AATTGGCACCAGTTATCACACTGTCCAGAGATTTGAACTACAGATAACTAGGAACTGTAG
TACTGTAGACGGATGCATTGGACTATCTGGTCTAAATAGTACGATGTTGTTAGCATTGAT
TGAAACTTCTGATTTCATTGGTGCATGAAACCCAGCATTGCTGTTAGAGCATCTCCAACG
CCATCCTTATCTGGCTCCAGCAATTTTTGCCAATTTGGGGCAAAATATCAGCTCGAACCC
CTTCCCTATCCAGCTTGGCAAAACGATTGGCTCAGCAACTCCTTCTCCTGGCTCAGCACA
TCTGTGAAGTGTTCTCCTTCGGCATCATCCAATAGCTGCATGTGCTCCAATCTGGAACAA
ACAGGAGGGCAACAGGCTAGGTGCTGGAACTGGTCACCCTTGTTGTCGCCACCGCATGTG
AGCTTCAATACGATCTGAGCTGGCAGCAAGGTGCAACTGCGATGACAACCTCTGCCCCCT
TCCCCAGCACAGTCCTCGAGTGTCTCAAGGTGATTGCCCTTCGCCAATGGTGTGCATTTG
CGACAACGCTATCGGAGCACCACCTCTAAATACCTGCTGGAGCCTTGACTTGTCATCAGT
GGCGTCACTGCAGCCATCATGGGGCTGATGCCGAGCGGCGACAAGTGTGGGAGGTGCTCA
CAACACATCAAGGAGAAGCGGGTAACGAAATCGATGGCAGGAAGGGTCCGGCTGATGAAG
CGGCGTCCATAGTTCCTGGTAGAGTGCTCGATATGTGTTTGGGGATGATGCGGATAGGCA
TGGAAGTAAACAAGCTCATCTGTTGTGGTTTGGACAACAGAAGTGGTTTAGTTAATTGAC
ATGGCCTTCATGCCCCTCGACTGCATGGTGGCACAAAACAGTATTGCAAGCATCCTGATG
TGAACCGTGAGGTGTATTTGCCCATTTCATTTTCTTGCTTGTCTGTTCCAAAAATGGTGG
TAAGAGTAAGTTCCTTTTTTTTTATCACAAAACTGATATTTTTGAACAATAGCTGCTGCA
TATACTGATGTGCAGCGGAGAGATTACAAATAATAATAAATTATAGGTGAGTAGAATATA
GGGAGCAAGATTTAGGGAGTGCTGGAGCGTGCAGAAAAATATGGAGGGATTTTTTTAGTG
AGGTCAGGGCATTGATGTTAGCAGACACTGCAGCTTCCTTTCTTCCACTTCATCGGTATA
TGAAATGTGGAACTTGGCATTTCACTTCATTGATGCATGATGTTTAACTGTTTGTTAAAC
ACATTAAGTAAACCTTGTGTTTCAATTCTTCGTGTGCCTACACTTATGTATTATTTTTGT
GTGTGCATGCAGTTTTTCATGGATGACTGTCTTCAACAACTCATGGATCGCGTTGATGCT
GGTGAGGGAGAGCTTTTGAAGAACTTGATGCTCACTGAGAGATTATGCAGACTTGTTCAG
ATGAGGCTTGAGATGCAGACACCTTACATTTCAAAGTGGCCTCAAGCGCTGAGCATTCAG
GTGGCCCGTTGTCTTTCTTTCATTTCCCCCCTCATTTGTGTTTTAATTAAGTTACCCAAT
TATATAATTTGTTCGGCAGTCCCAACCAGCAAATGTCTCGACAAGCTTAAAGCAGAGAGC
AGTCCTTGTGGATGAGATTTGGCATGCTGCTGGAGATGATGGATCAGATATTGATTGGTA
TGCAAAACGTACTGTGCTTGGTGGCATCTACTCAGCTTCAGAAGTGTACATGTTAACAGA
TAATTCTCCAGGTTTGCACCTTTTCTAAGCTTGAAACCCATTCTTTTCTACTTGACAATT
GGCTCTCTAAACCAACATTAGCAAATTAGCAAGCTTTGTGACTATGTACTGTATTGTTCT
GTGTAATGAAACTGGAGTAAGGCTAAGTTTGAAAGTTGAAACCGGCAGTTTGGAATTATT
AAGCCTTTACACTTAACTGGTTTGATTATGAGTTGTTTGCGGAGCTATGTGACTCGACGC
AATAGTGTATATACATGACAAAAACAAAACATCTGCAATTTCTCGTGTTCTTAATAACTT
ATACACCCTCCTGTCTCTTTTTGTTTTTGTCTGGGTATGTAAGACACGTCATTTCTTTTA
GTAGGAGTAGAAAATGCTGGTCTTCTGGTTCTTCTATCTTGAAAAACATAGTGATGGAGA
AACAAGGTAAGTGGCGAGGGTTTCTTCTCCCTCCCTCCTTTATTTCTTGCCTTGTTTGAT
GTGTTCTGTGACATGCAATCCATCTGAGAATCTACACCACCATTCTACCCCCTCCGTTCC
TAAATACTATAAGTCTTTAAAAAAATTTCACTAAGAATTACATACAGAGTAAAATGAGTG
AATCTATATTTTAAAGTATGTNNNTATACATCCGTATGTAGTCCGTAGTAGAACCTCTTA
AAAGATTTATACGGAGTATTTAGGAACGGAAGAAGTACTTTAGTAAGGAGTTGAACCCTA
GATTTATCTTAGGCGTACTAATATTCTAGACAACATATTACGCAATCCACATTTTCTTTG
CAGAACTGATTGGAATATAGACTTGTTGATGATTTCTCATTTCTGCTGGCACTTGTCAGA
GTTTCACGACACATGGACATTTGTGAATCGCGGCATCAAAGGTGCTCTTGATTTGGGGAA
ATCTTATAAGGAGGTAGGAGTCACTCAAATTGAAACTGTATGAGTTGTTGCAGTTTTTGT
CAACCCCTTCAGGCACTGTTAACCTTGTGATCTGACATAATCGTCTGTACAGGCCGCGTA
TCTTGCTGAAACCGTGGGAGCAGGGATCGGTGGCTCCATAAATGGCGTCCTGAACAAAGT
TTTCCAGAAATGAAGAACCGCATGAACTTGCCTTTGCAGGCTGCATTCTCGACATTCCCT
CTACCACTTTCTTATGTCACGTTAAGATTCTATGACATTGTATATAGTAATATATACCTC
CTTATAAACAAACCCTCTTAGGGTAGACTTGTCCGCGTAGCCGAGAAGTTATTTAGTCGG
TGGTCAGAGGTCATTTGAGCTGTTGATTAGTCATCATTGCGTAATTCTGCTACAGGTTGG
AGAAAAAAAAAGTGTGAGCTCTACATACTCTAGTCCATGTGTGACCTGAGTTGCTGCAAA
CAGAGCAAGACACTCGCGGCTTTGCATGGACACGTCCTGGCATTTAAAACTTTATTACTC
ACTCTTATTAAAATTACTTGTTGCAGCTTTAGTAGTACGGAGTACAAGTTTTGAAAAATC
AAAATCAAAACTTTATTACTCTTGTTGGTTCCTACGTGGAAGATGGGCTAACACAAGTAC
GCGAGGTGAGCACTGATGTATACATGTAACTGGAGGACAGCGCTCGTTGCCATGGGATTG
ATTGCAATATGTTCCGAGTGTCTTTTAGAGATTTCATGAGAGGGCTACATACGGAGTAAA
ATGAGTAAATCTATATTTTAAAGTATGTCTATATACATCCATATATGCCCCTCTAGTAAA
ATCTTTTAAAAAACTTATATTTGAAAACGGAGGGAATATGAAGCATGAATAGTTGAATTA
ATAATATGTGAACCAAGACTAAAAATACATATTATATTGTGTTTGATTATTGTGTATTTA
AAAATATTTATTAAATGCAAGTGACGTGTGGTGAGATGGGATGCGCATAAGATCAACTAA
TAATGAAAACTTTTTCTCATGCCTATTATGATGCGCCTTTGATGAGGTGACATGTGTGCA
TTTTAAGATAATAAACATAGTTAGCGGGATCAACTATTTAGTTATGTAAGATGTGCGTGA
CATCATAGAATTCGATTCTAGAGATAAACCTAATCACTAGTGAGCAGCGGAGTACTGTGG
TATTGTGTACAGGGTGTGCACACTTTTCCAAAGAAAAAACAAAATCAACACCAAAAAAGC
AATGTCGATAGCTTAATTAAATATCACAATACTATAGCTTAATCAAGTCTTATAAAATAA
CAATTCAAATAGTCTCACGCGAACAAATGGAGATGCTTCCATATGTGTAACATCTCTACT
GCTGCATTACTATACACAGCAACATTTATAAATACCTTTTGCCTTTTTTTTCTTGGTAAT
ATGTGTCTCACTCGTATCATACAAGTCATATAAAAACCGACCCGACAAAACTGAAAAGAT
AGAAAAACATCTCTAACTTTGATACCAACGTTCGTCACCTGTCTCCAACATCACCACAAC
AGCTACCGAAGAAAAGAATGACGAATCATCTCCTCACCCGAGCTCGACGCGGCTCATCGT
TGATACGCAACTTTACGGATCTTCAAGGTGGCTCACCAAAAGTGAAGTCCTTGTCGTTGA
ACGAATCAAACCGGGGCAACACCCGAGACACGCCATCCATCTGCAGATCTAGCATCCCAC
CACGACTAGGACGTCGAAGGAGGAAACCATATTTGCCATCCACGAAACATGAATCCATCA
CATGTTCCGTCTTCCAGATGTCGTTGATGCAAACCATAATTTGCATCCGTTTCTGGACTA
CCTCTCAAGCTCCGCGCCGACGCTGGAGCAAACGTCGTCGTAACGGCGGAGCCCGAAGAC
ACATGTCCATCACGAGGATGCCGCCGCCGTCACGCCATTCTTGCTTAATCAAACTGGTTT
TCGAATACATCCCCGATCATAGGACCGATGGCCTCGTCAGGGAAGGATCCGAATAATCTT
TATTCAGCGTTGTCATCGCTGCTACCGAAGCCAAAACGATGAACAACCTAAAAACTTAGA
CCACAAGGACTAAAATTGATCCACACACGTGGATCCGACGATCCTCCTCAGCACCGATGA
CCGAGGTCGCCGGCGGAGGAGAGCCACCGGAGACATCGCTGGAAAATTGTGCTCTCTTGA
AGGCGTCTAGGATTCCAGCCGAGCCGCCAGGTAACGTTCTCCTGCCTCCCTGTCTATACT
TTCCAGTACACCTATACATTACGATTAGTACCTTATTAGGTCTTACACTACCGTGAGGGC
ATATTAATTACTGTACTGTACCATGGTTGACGCCATTTGTGGACATCAACGCTTGTAGTA
CCACTCGAGGCCGACATCAAAGTTGAATGCACAGATGCTGGCTGCGCACCCACCGAGCGA
TCACCAGTGCCTCTCCTGTGCAGTCCAAACTCCAAGCCAGGCGAATCAATGGAGAACCGC
GGTGGTGCGCCGTCGCCGCACCTGCTGTTCGTGACCAGTCCAATGCAGGGCCACATCAAC
CCGGTGCGCCGCCTTGCCGCCCGCGTCGCGGCAGCTGGCGCCGCGGTCACCGTCTCCACC
GCCGTCTCCGGCCACCGCCGCATGTTCCCCTCCCTCGCGTCGCCCGGCGAGGAGGCCGTC
GACGCCGCGGGCCTGCTGCACGCCCCCTTCTCCGACGGCTACGACGACGGGTTCGATCCA
CGGGTGCACGACATCCGCTCCTACGCCGCGCGCGCCCGCGCCGTCGGGTGCGAGACGCTC
GCCGGCGTCGTAGCCCGCCTCGCCGAGCGCGGCCGCCCCGTCACGTGCGTCGTGTACACC
TTCTTCGTGAGCTGGGTCCCCGAGGTCGCGCGCGCCAGCGGCATCCCCTCGGCCCTCTTC
TGGATCCAGCCGGCCGCCGTGTTCGCCGTGTACTACCACTACTTCCACGGTCAGGACGCC
GTCCTCGCCTCCTGCGCCAACGACCCTGATCGCGACGCCGTCGTCCAACTGCCGGGGCTG
CCGCCGCTCAAGTCCCGCGCGCTCCCGTCCGTCGTGTCGTTAACCTCGCCGGAGGAGCGG
GGCTACGAGGTGGTCGGCACGCTGCGCAACCTCTTTCTGGCGCTCGATGAGCACAGGCCC
AAGGTGCTGGTCAACACGTTCGATGCGCTGGAGCCCGATGCCCTCGGCGCGGTGCCCGGG
TTTGAGCTCGTCGCCGTTGGGCCTGTGGTGCCGGACGACGCGTCTGCTCCGTCCACCACG
GACCTGTCCCTGTGCGACCACGACGTGAGCGGGTACATGGAGTGGCTGGACACCAAGGCC
GCGCGCTCTGTGGTGTACGTATCGTTCGGGACCATATTTGCGGTGAGCAAGCGGCAGGAG
CTGGAGACGTTGCAAGCACTGAAGGCCGCCGGCCGGCCGTACCTATGGGTGTCGCGCAAG
GTCGCGGAGGTCGACGGTGCAGAGTTGGACGGCGCGGGAGCGGGTGGCGGCGCCGACGGA
GGGCAAGGGATCATGGTGGGGTGGTGCGACCAGGTGCGCGTGCTGTCGCACCCGGCGGTG
GGATGCTTCGTGACGCACTGCGGGTGGAACTCGGCGTTGGAGAGCATCGCGTGCGGCGTG
CCTGTGGTGGCGGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTGGAGGAG
TGCGCGGGCGTCGGGGTGCGCGCGCGGGCGGACGGCGAGGGGGTGGCGGAGCGAGGCGAG
CTCCAAAGGTGCGTGGAGACGGTCATGGGCGACGGCGAAGCAGCATTGGAGATCCGAGCA
TGCGCGGCCAAATGGATGGAGCGGGCCAGGGAGGCGGTCGCTGCCGGCGGGACGCTGGAG
TGGAATCTCCGAGCGTTCCTGTCTGGTTTCTGAAGAACGAACAAACATATGCGTGAAGCG
TGATTCTTTGTTGGGAAATTCGCGCCGCACATGGACATCCGATGCTGAGGCTTGTGTGCC
TTCTTTCTAAATGATAGAATGTAAAAACTTTTATCTCTTAAACCGTTAATTCAATCGATG
ATCCGTTTTCGCCTTGACTTTGTTTCGATAAAGTCTTATCGTCCGCCTACATCATCCTAT
TGTACTTGCTCTTAGAGCAAGAACAATGGTAGAGCAGCCGGCTGTAAGCTCATGCCATGT
CACCTATAGCCAATCTTACAACTAACATGTACAATAATTGGTTAGAA