Map Locations of contig_38529 (9872 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_38529

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53640 3 1242 bp AK369689 Available Available None





CDS Structure of MLOC_53640






Contig Sequence (9872 bp)

>contig_38529 9872 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCGGTGGGGCGGGGGCCGCGCGGGGTGGCGGGCCCGGGTGAGAAGTAGCACG
ACACGGGGTCGTCCACGCTGGCGGAGAGCGGGCCCACGCGACCTAGTGGGTCCGGTTGTT
GTTGGTGCTGGTAGTCCTCGATGGGCCCCCAGAGGCCCAGCTCCTTTTCCAAATCTTCCA
ACCACCACTCCTTTCCGTCGTCCTCGTCGGCCGTCGCCTCTGCTCCGTTGCCCTGGCACG
GCGCCGCATTTCCCCACGGTGCCTGGGCCGTTTCCACGCACGCGCCGTCCATGATGCTCC
ACAGCTCCGGGACGATGTCGATCTCCGGCAGGTCGAGCAGCGCGTCGTCGTCGTCCGCCA
CGCACGGCGGGGACGCGGACGTGCAGGACGAGGTCGCCGCCGAGGAGACGGCCGGGCAGT
GCGTCTCTGGGACGGCGTCAAGGAGCATGTCGATGTCGATGTCGAAGCCGAGGTCCAGCA
TGGGGATCTCGATCTTGTCCAGCTCCGGTTCCGGCTCCTTGCTGCTGGTGTTGCTCTGCT
CGCCGGACTCGCCGCTGGAGCAGTTGGTGGTGGTGGTTGTGGCGGTTGTGGTGGAAGAGG
ACGGCGACGGGGACGGCGACGGCGCCGCGCAGGTGGTTTTCTTCTTGGTCTTGGGCCCGG
GCTTCTTGTGCTCCCCGGCGCTGGCCGCCACCCGCTTCTTGAGGTGGGTGTTCCAGACGT
TCTTGATCTCGTTGTCCGTCCTCCCCGGCAGGCACGCCGCGATCTTGGACCACCTGCACG
CCACAATCTCTAATGAGTCCGCTGCTACACAATCTCTAATGAGTGCTAGTAGTAACCAAT
CCATGGACGTACTTGTTGCCGAGCATGTTGTGCAGCTTGATGAGGGTGTCCTCCTCCTCG
ACGGTGAAGTTGCCGCGCTTGAGGTCCGGGCGGAGGTAGTTGATCCACCGGAGCCGGCAG
CTCTTGCCGCAACGGAGCAAGCCTGTGTATCAAACCAAACCAAACCAAACCAAAACACAT
GACATCAGTCGAGTTCTCTACTCTCTCAAACGGAAAAATTGAGATGTGATCACTGTTCCA
TCCATGGATGGGCGGGAGGGCATTACCTGCTTGCTTGGGGAGGGCGCGCCAGTTGGCGTG
GCCGTACTTGTGAATGTAGGCGATGAGGCGCATGTCCTCCTCCGGCGTCCAGGAGCCCCT
GTTGAGCCCCACCTTGGCGCAGCACGGTGCCCGGCCTTTCCCCATCGACCCCCGGAACCT
CCCAGCTACGAGCTACCAATCCGGCAGCTTCAAACAGCTAGCTCGCCGCCGATGGCTAGG
TCTCTGCTGCTGCTGTTTCGCTCTCTTGTGCCGGACGTGTGCAAGCTGCAACCGGGACAC
TGCCAGGACGGCCGGTATATATACACGCGCACGCGCGCGGGCGAGGTGAAACTTTTGCTG
CTGGTGCGCAGCCCCTCACCCTGCGACAGGTGACACCCAGCCAGCCAAGCAAAGCCTACG
CCTTGGTCCGTGTGTTTATGTGTCCCCCCGTCCGTCCGTCCCCACCGCTCACCAAACCCG
ACCCCACTTGTCACCACTACCCTTGGCCACACTGCACACCTGAGCCGATCCATTCACCTG
ATTTCCTCGGCCGCGACGTTGCGCCGGCGTTGCCCCCTTTCGTGCCCAGCTGGGCGTCCG
AGTACGATGCCCGCCACGACTGGACGTGTGTCGCCGCCCGGCCCCGGCGACACGGCGGCA
CACGGACAGACGGTGGATCATGATCCGGCCATGGCGAAGAACTCACACACACGCAAAAAA
AAAAAGTAGGTTAACGGGGACAGGGACGGGGCCGTGGAACGGATCTCATCTTTCCCACGA
TTCGTCCAAATCAGTTTTAAATGGCGGGCAACAGTTTAGCAAAATAAAGCACCTTTGCTT
CGAACCAAATTTATTGGTGAGATCGGGTTGGGGAACAGTACGAACGCACTGTTCCGAGGC
TCCGATAGGGCGAATCAAATCAACAGAGCTTTAGTTTGCACCCTACGATTTAGTGTTACA
ACAGGCCGTTCCTTCTGATTCAGCCCGTTCCTTCTTCCATTGTGGCAAAGGGGGAACTGC
ACTGCAGGGTGCAGGACGGTGGTGGATCGCAACCCCGCAACGAACAGTTCAGCTATGGCC
ATAATTAGAGCGCATGCTTTTGCTGCTTGTTTTTCAATTGATTCAAAACAAAGAGGAAAA
CGTCCTCGATTGGGTACGGGTATATGGCATGATTGATCTGAATGGCCGGGACGCCGAAGT
TTTCGATATATCCCCGATTAAGTACGGATATTGGGAGAATATGGTGGTGGCAACCGGCCG
TTCAAATGTTCCGTCAGTAAATTTGACCCCGAGTGGTATTATGTGTTCACAAAGCATGCT
TTCAATATACTAGAACCTGTATATAAAAAAATCGCTGCAATTCGCCTAGTACGACCGCAA
GCGTTGCTCAAAACCAGCTGATGTTTATGTTACTCAACTCAACTGCTTGAGTCGATCCAT
GTGTAACTCTACTCCTACCATGTAAGCACACGTAACGTACACGTACCACTGACTAATTTG
AGCATGTAAACAGATCCTCAACTGTCATTCTCTGTGTTTCTTGCCCGGGTAACGCTCATG
GGATGCCGGACTGCATTTCAACCTCGCTTCATTATCCATCCAACCAAATTTGACTGGAGG
CGTGGCCGTGTGTCCGGCAACTGATGCTTGTGAGGTGCATTGCATGCAGGAAGAAATCGT
CGCCTCAAATCGCAGACAGTTTCGTGATGGCAAGCAATTTCGCTGCAGACTAATAACTGG
GGCGCCCAAATTAGCAAGAGGATGCTTTGACCGTCCATCCGCCTTCCATGCACATGGACC
GGAGCGGCCACACACGATGGGTGCCGAGTCACCTTTCCTATTTGGTTCACCAGGGAATCA
AGACAGCAAAGAGCATTATCCCTCGCTCATCATTTTTTCCTTTTTTGAAGGGATCGTGCT
CATCGTTTCGATGTAATATATACTTCCTCTGTATCTAAATAATTATAGTTTAAAAAACTA
GTCTAGTTTTCTCCGACTATAATTATTTTAGATATAAATAGAATACTACTCATATATTCG
TATCAACTCAAAAGAAAGAATAATATGTTCATATACTAGCTGGCAAGACTCACATTCAGA
ATAGCAAAGGATCTGCATGATTCCTTCGTTTAAATAACAAAATCGTGCGCACCGCACATC
TAAAATACTGGAGTGCTTGTCTAAAAAAAATTAGAGTTTGCAAGAACAAGACGAATCGTG
TTTGGGTGATCAGAACCCTGATCCCTGCGGCGAGTCCGACAATGGCAGCATTAGACAATT
CGAGAATAAACGGCTCGGGATCCCGATTCGCGGGACTGGCATCAGCTCAGCGCGATCTCT
AAGCACTCATTAGCAGGATCTTGCAGCGGTTGAGAGCCTGCGACGTCAAACATTTTACTA
AATTATTTCGAGCTGCGCAAGTTGCTTGCTTACACTCCTAGTAGTCGTACTGGTACCAGT
ATTCTACTCTACATGCACCAGCCAGTAGCTACCCTACGGCGACGAACGATGATGATTGCA
TGAAGCTAGAGAAACCAATTAATGGGATGTGTTCTTGGTGATGACTAAACTCAACTGAAC
AACCGGTCGCTTTCCATCCGGAGACTGGAGCAGATTCTTTGCTGCGTGTGTGCCCCAGCC
CGGACCAGCCGAACCGCAGCTCAAGTCTTTGAGTTAGGGTAACAAACATGCGCTGCCATT
GTACCTAATCCTTGAAAACATGCTTCTCTCTTCTCTCCGATGGTTGAAAACAATGCGCCA
CGCGACGCATCGTGGACTCGTATTGCGTCGCGGCTCCGTCGATCGGGCCTGGAGAAAACA
ATGGACTCGCGCGCGCGCCCGCCCGCCCGCCCGTCTTTAAGTTAAAGTTTCTTTGACCTG
CCAGGCTGCAGCAGCCCTGCCGTCTGTGTGATCCCCTACCTAGATCTGAATGACATTTTA
GCTAACCTCATCGATGACATGATGCAAGGACAAACAGGATGGATAAGCCAATCGCGCATG
AGGAAGATGAGTGATGTGTGGGCAAGGCTATATAGCCTACCTATCCTCGGATTGCTAGTA
CCTTTTTTTGGCTCCCGATAACGCCCAAACGTGTAGTAGGCTGGTTGTAATGGGTAGTAT
CATATACTAGTATCATGATCCGTAATGTATAGTATCATATATTAGTATCATAGGGTAGTT
TATTTATTGTCATGCANNNNNNNNNNNNNNACATCATTTAATATGATACTCAACCCTTTC
TTTCTTCATTTAATTTTATGCCACCTCATCAAAATTGCTTAGTTGGCATGCATGATACTA
GTTATGATACTCCCATTACGGTCAGCCGTATAAGCAACAACGGTCACAGCGTCCAATGCT
CATGGGTTGGATCACGTCACCACATGCATAAGTGAAGAAATTGATGATGTCATTTAAAAT
CTTTTGACTTTTCAGATTTTAAAATATTTTATCTCTCAAATAAAAAATCCAATTGAAAAC
ATTTTCACCTTTAAATCGACAAGATCTTCGAAACTAGACGTATCGATATGTTTCGATGAC
TTTTTTAGGGTTATAAGTTGACACATCCATTACACATAAATTGTCATCATAAGTACACTG
AAATTGTCATGATATATTTCAACTATTTTTTCTTCTACGCCTAAAGTAAACTTTGACATG
TTATAAAAAGGGTAATTAACCAACTAAACTTGCCATGGTGAATTACTCAAACTTTCCATG
ATCCATGAAATAGTTTTGACATGATTCACAAGTAAAAAAGAAATATGCAGTTAATTACTT
TGAAAATGCATGGTCACTAGCAAAAATTTGTCATTAACCATAAACTAAATGTGACATGGT
AAATTACTTAAACTAGTCATGATACATGCACTAAAATTTGTCATGGTTCATACAAAAAAT
ATTTTTCATGTAAAAATACTTAAATTGCCATGGTCAAAATAATGAAATTGCCATGATCTA
TAAACTGAATTTGCCATGATGAATTACTAAAAACTGCATTGATCCATGAATTAAATTTTC
CATGCTTAATAACCAAAATATGCCATGGCCAATTAATAAAAAATTCCATGAAAAGTAGTT
GAAATACAAAGGTATCATTAAATCTAGAAGAAAAAGTTAGATGAAACATGTCGTGCAAAC
TTTATTGCAAACACTATGACAACTTCAGTGTAAATATGTAACAACTTATGGTCGCAAAAA
ATATTGTCGAAACATATCAATACAGGATCTATTTTAGAAGACCTCATCAAGATGGATTTA
ATGATGAAAACAAATTTTTAATTAGATTTTTCATTTAAGAGATAAAACATTTTTAAGTCT
AAAAAACAAAAAAAAAAATTGCTGATATCATACATTTGATGTGGAAAGATAGATGGATAT
GGAGGCGTGTGGACCATATTGCCTCGTGCCACACGTATGGGCATTACTATTTCCCTTTTT
TTTGCCTCTTGAACTCCAATTTCATAGAAGTGAAACTAGATGCGCGAAAAGTAAATAATT
TATCATATGTCTATGCTGGCAGTGCTACTCGTACGTAAACTTGTAAGGGTATCTTCAAAA
CCGACTCACAAACCGAACAAAATATCCGTCCATGGATAGGGGGAACTAGTCCGCGGACAC
GGATATGAGAGCTGGCCATTCAAAGAGACTCGCCTCCATTTCAAGTCGTTTTAACTAACT
GGATGAATTACATGTAAAACTAGTCTATGGCTCATCGTAGCGGATCACCAATCCCATGAC
ATGTCTTCCTTATGTCCGACAACCCATTCGTCGGAGTGCCGGAAGCCCCTCCTCCTTGAA
GCACGAACCACAGGGTTGAATTTTGGGTGGGGAAAGATGGTGTTTTCCAGCTTCGACGGG
TGAGGTAGAGTGGCAAAGATGGTGCATATTATTCGGAAGGTTTTCCGACAAGCTGACCTG
TATCGGTCTCGCTCGTCGGGCATCCCAGGCCGCTGCAATGCGAGATAACTCCTTCTGTTC
CTCGGAGGCCATGGCGGGTATTGTACAAGGACGATATGGAGAGAGTAGAGGTAAGATGTG
TTTCTTAATTACGAGGAGCTTGATATAGTGAACGAATGCGAGGAGCCAGCGAGAGAGGCC
TTTAATTTCGGTCAACAAAAGAATGAACGTGTGGAACTCCTGGCGTCGAAGTAGGTTCCT
CGACGCACGCATCAGTTTAATGAAGGTAGGTGGCCAGTTGAATGCCGTTTCAATACAAAG
AGAATGTGTGCGCAATAGGTGAGACGGACAACGCTCTTGGCCGGTGAGCTGCTTAGTTGC
CGGCTCTAGTTAACAGCCGCGTCCACTCTGGGCCAGCATGAATACGGGCAACTCGCTTTG
GGTGGAAAGCACGGGGTGTGGGAAAAAGGTTTTTGATCGGCCATGGATGTTAGACGCAGG
CGAGGCAATGGTCTGGATGCGTGCAAAGCCCCTTCCCCCACTAATTTGTTTCTCGTTTAC
GAGAAAAATGTATGTCCAAAACGGTGAAATGGACTGATACAGAATTATGTTGGATGGAAA
ACACGCCCGGACCGCCCGGTCTACCTCGTTACGTAATACTGATAAATAATTATGTTGATT
GACCAATGACATGGCAATGATTTTGTACACTGAGAAAACCGAGAAACACAATACAATCCG
AAAACTCGTTATAAATCAAAGGGGTAATATGCATATTTCCAAAAGTAACAATCACTTAAC
AAGTGATATAATTGCTTATTTTAAAATTCTATTTTTGCGAAACAAGTAAATAAAATCATG
TAAAGCAAGAATATCATGAATATAATTATTATTCTACATATTTATTTTAAATATGGAGAT
ATTATTGATGGAAAATATTTTGAGAAATATAAAATGGGGAATAGGTATTCTAGGAAAGCC
TGAAGAATTAGTGAAAGTTCACAAATAATTTACAAATTATGAGCACTCAATGAAGATCAT
TGTATACCCATTCGGCATGAATATAATGAACTTCATTTGTTACCCTATATTCCCAATTAC
CAAAATCAGATTTTTCCTATCAATTTTCTTCATTACTTTGATATATTTCAAAATATTAAC
ATATTTAAAACAATTTTCTCTTATTTCCCCTGAATGTTCCTTTTTGTTGTTCGTCCCTTT
TGTGCCGAATAGATTGTCGTGTCATTTGTTCAACATCAAAGCAGTTCGGGCGAAGAGTCA
TATCAGTCATGTTTGCCAAGTTTTAGATTTTTAGGATTCCAGGTTAGATTCAGCTTAATT
ATTTGGGAAACCATTTTTTTGGCATGTTGCACGTGCGCAAGGAGAAAGACGGAAAGAAAA
AGGCTAGGCACACAAGCTTTTCTTTTGCAAACACTAAAACTCATGTAAACAAAAATCAAT
AAACGCGGTACAACCCGAAATATCTTAGTAATAAACAATGAATATGTAGATTTATAAAAA
TAACTATCACTAAGATATATTTAATAATCCAGTAAACCATGTAACTAAGAAAATTAAAGA
ATATTCCACGTAGTTTGTAAAAAATGGAAATGTTACGGATGGAAAATATTCAGAAAAAAT
AAAAAGTATGGGGATGTATTCTTGGAAAACATAGAGAATTAGAGAAAGCTCGCAAAAAGA
ATTTACGGAATATGAGCATTCACGGATATACCCTTTTTGCATGAATGTATTGAACTTCTT
CTTGTTGCCCTATATCCCCTGTCACCAAATTGAGCTTTTCCGTATATTTTGATATACTTT
CAGAAACTTCCATGTGTTAAAGTAATGTCCTTTCTTTTTATTTTGTCCATTCCTTTTATG
ACGAATAGACCGTCAGGTCGTTTGTCGAACATCAAAACGGTTCGGTTGAGTATCGATATG
AACCATGTGTGCCTAGTTCTAGGCTTTTAGGGGCCTATAAACTAGATTTAACATAATCAT
CAGCTTCGAGACCATTTTGTTTTTGTCACGTTGCACGTACGTACGTATGCCCGGAGAAAG
ACTTGGAAGGAAAAGACCAGCACAACGCGCTTCCTCGCTTTTGCAAATACGCGCGCCCAA
AAGGCCAAAACGTGGCCCTCCTCATTTCCTAAAAGCAACACACATTTTCGTTTATTGGTG
GTGCACTTGATGAACAGTTTCAACTTTGATATGCTGTAGTAGGCCAGAGAGAATGGCAGG
TAAGGACTAAATTAGCAGCACCACCACGGCATGCATGGTGAAGGTGAAGCACGTTGGGTT
TCATGTTCCATAACATATGACCGGGCGGCAACTAACTTGCATGCGGGTGCGGCCGTACAT
CATGCAGGACGCTGCTCCGTGCGCCTTTGTGTTGAACGAAAGGGAGGTAAAATAGGAATG
GTACGAAAAGGAAACGGGACATGGGATCGGCGGAGATCGATCGGCTGCGGCTCAGTGCCG
GTAGGTGACGACTACCCCGGACAAGAGTAGGACAAGTGATCACACTGTAAAAGCACCACG
CGGCAAGTGATCACGCTGTTATCCCCGTCCAAAAAAAAAAAAAAAGTGATCACGCTGTTT
AAAGTGGTGCAACAGACCCCCCAAAAATCGAATCGGCAATAGATAAAGGAGAAACGGCGG
GCATTTGGCTCGCAGCCGTGTGCATGCAACCCGCCCGCATGGCACCAAAAGAGGCTTCAA
CGGTGCTCGCTCTCTTTTGCGCGGCAACGACGGTGATGATGATACCGCCTTCTATTTTCA
ACGTGCGAGGACTTGGATCGAGCCGGGTGATGGCGATCGACGACGGAGCATTTCTTTCTG
ATCCGACGCCGGTGGACGGAATGGAATTGATGAAGCCGCCCGCCCTTGCCACGCGCGCCG
CACTTGTTGCCCGGGGCCACGGTCGGGCCTCCGCATCGATGATTCCTTTCGTTCCGTTTG
ACCGGCCCGGCGGCGAGCACGTACGGGAATGTGGTGCGTGTGTGCCGGTGCCGAGCTCTG
CTGACGGCCGGTTGGGACCTGTAGTTTGGAACTGCATGCGCGCTGGCCCGTGGGAGTTTA
ATGGTCCGGCTCTCTCGGTCTCGGCAAGGTCACGCGGGCGGCACCGTCGCCGGCACGGTG
GCGCCCGGACGTGCACCTACGGGTTTTGTGGTATGTCATGTCTGCCTACGGGTTAGACGC
ATTCATCACCGGAAAGGCGGGGGTCGGGTACGGTACTCCCAGCGTTGTTGTTGGGCCATA
CAGATCATCGTCCATGTGTCGGGACGCCGATCGAGGTTGACGCGCGGCCGGCCGGACGAG
TGTCACCGTCGGCGCCACACATTCGCCCCCGGCTTGTGTGTCTCACCCAGGTTTCCGGCC
GACCCCACGGAAATAGGAGTGCCGGCAAGGCTTTTTCATTTTGCTGCCCTTTTCATTAAG
GCGGCTGCTACGGATGAGGCGGATGATTTCGTCGTCAGAAAATCATCCGCCTAGCCAGCC
GTTAGATTTGGCGCTAGGGGACGTACGATCTGGCGCTGCATCCGAAGCTGCAGGTGCTGT
CCATGGCAACATCAAGCATCGGCGAAAGCTTCATGGCAACCCCCAGCAGCGAGACGAAGC
TGCAATGGAGCACCGACGCCGCAGGCAAAGCTTCAGTGCAGCACCGGTGAAGCTTCATTG
ACGCCCCGACAAAGCTTCAGTGCAGCACCGACGAAGCTTCATTGACGCCCCGACGAAGCT
TCAGTGCAGCATCGGCGAAGCTTCAGTGCAGCACCGGTGAAGCTTCATTGACGCCCCGAC
GAAGCTTCATTGACGCCCCGACGAAGCTTTGTTGCAGCTTTGGCAAAGCTTCATTGATGC
CCCGGTGAAGCTTCGTTGCAGCATTGCCCGTA