morexGenes - Barley RNA-seq Database

Contig contig_38524
Source Contig contig_38524
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38524 (8475 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_38524

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53634	1	272 bp	MLOC_53634.1	Available	Available	None
MLOC_53633	3	1114 bp	MLOC_53633.3	Available	Available	LOC_Os05g28370.2, FRAME:+2, EVALUE:1e-51, 13105.m02921 protein expressed protein
CDS Structure of MLOC_53634

CDS Structure of MLOC_53633

Contig Sequence (8475 bp)

>contig_38524 8475 assembly3_WGSMorex_rbca.fasta
AATATAAGAGCGTATAGATCATTAAAGATGTAATCTAAACATTCTTATATTTCTTTACAA
AGGTAGTAGAAATGAATTCCTATTTTTATGTAAGATAGAAACCAATCCTTCACATTGCAA
AGAAAAAAAATACTAACCTAGACTCAATAAAAAAAAATCATATCCTATGCATCAAATGAC
ATATTTTCTCTATAGAAATTAAGATGTATATCATTTCACTTACTATGATTTTTCTGCTTC
TATGATATTTTTATCCCATGAACAAAAAAAGGTTTAGACTCGTGCAATTCAAAACAAAGA
TGATGCCGACGGTGAAATTGCAAAGAGGCGACCACGATGACGAGGATGAAAATTTACATT
TAGTGTGGGTCGATTTAGAGACTACAAATAAGCCTGCGGGACTGCAACTAAGGGCAGGAC
AGCAATACACGTGGCACAACGTCGGCTGTAGACAGGGAGGCAGCCGGTTGGACTGGGCAG
GACAGCCGGTGGCTGAAGGTTGAAGACGACAGGAAGCCCTTGGATTGAAATCTGACGGTG
GCTGGAAATTGGCCGCACGTTATCGATTTCGCAGGCGATTGTGCTCTAGGCGCTCATTTT
CCCCCCTCACTCTAGTCTGCCATTGAACAGGACTCTCAACACAGATCGGAAACCAAGCCG
CCGGCATGTCGTCCTCCAACGACGCCCCCGCGAGCCCTCGCTCCCAGGTACGCCAGGCCG
GGCTGAATTTCCCAAATCCCTCTCCCAAATTTTGGTTGACGAATCCCCTCTGCTTTCCCT
TTTCTCTGGCGCGCGCAGCTCGTGCTGAGCTGCTTCGAGGAGCTCCTCGACCTCGCGGTG
GCGGACGTGGCGTCGGAGTGCCACCGCATCGCGCGCCTGGGCCTCGACCGCAGCGTCGAC
GCCGAGGAGGAGGAGCTCCGCCTCTGGGCCGCGCGCGTCGCCGGCGACCACCCCGGCGCC
GAGGACGGGGCCACCCGCGGGGCCGGGGGGAACAAGGGCGCGCCCGACGTCTTCGGGCAG
ACGCACCCCGCCATCGCCGCCGACGTCGTCGACTGCATGAACTGCGGTCGCCCAGTCGTC
GCCGGCCGCTTCGCCCCGCACCTGGAGAAGTGCATGGGCAAGGTAAACCCGCCGTTTGCT
CCGGGCATCTGCTATCAGCGCTGGTGTCCCAAATCTCATTGTCTGTTCCCCTTTATTTCC
CGTTTATCAGTGCGGGCATTAGAAGTGGTAGACCGTTTAATTGCTGCGGATATGCTAGCT
CGTATGTTTCTGATCTGAGTGGTGGGATGCGCTTCCTCATTGATTGGAAATGACAAATGA
GTATGTTCCCTCATGAAGCCTCACAAAAAGTTACTGTAGATTCTGCTCCGTATATTCAGT
TTGTCTGTTGATTGATTAGCAAAGGGTTGATTTGAGCCCTCTATCTCTGTAAATGCTCAG
TTGCAACCCTAAAACCAGTCACAAAGGTGTCTCGGTCCATGTAGGAGTTAAATAACCTAC
CATCTATTGAACTTTTCATGTGTATAAGTAACTAATTACTTCTATATACAGGTATGTTCA
TTTCACAAAAAAGTTACGGTGTACTGATTGCTAAATGAACAAAGTTATAATTCATTGAAG
TATCTTTAAAGTTACAGTACTTCACAGAAGAAGAACAATGAGTGCATTTAATGCTACATC
TCTGACCAGGCACTTCAAGTTTAAATTCAGCTAATAAATAATGCGGAAGAATTTATGAAC
TAAAATAATTGATATTTCTGTTATGACAATTACAATTTCAATGTCTTTTGCGGATTTGCC
ACTATGGACAAACCATTAGTCCCACCGGAAGGAAACTGGCAATACCTTTACAGCCCAGGG
GATGGTGGGTCCAAAATATTCAACATGTGTTGTAGTGGTAGAATGCCATGCTAATGTTTC
TTCTTACATTGGTATGTATTCAGTTATTCAAGAACTTCCACCAGTTAGGCCTGATTTGCA
AATACACATGCAATGTGAACCTGGCCACAGCTATTATTCACGTTAGCTTTGGAACTTATT
AACTTTTGCACTCAGTACATCAGGAAGCTCATGTAGATGATATAATTTTCTTCACAATAG
TTCCTGCGTTTCATCATGTTCTGCTGATCCAGAATTAACCAGTATCCGATCTTTAATGTT
GGTGTGGATATAGAATTCTAGATTTTTACATCATGACATTGTCTAAAATGATCCACTTGC
ATGACAAATTACCTCATATTTTCTCAGTATTCTCTAAAATCTGTAATCGTTAATCCTCCT
TTTAGTCTTAGCCATCTAAATTGCCTAATGATTCCAGCTCTGTTCGAGCGGTTTAAATTC
TGAATGCTGGACTTTGTTTGCACAATCGTGTACAAATCTTGATGTCAGTAAATTTGGAGC
TGGGGCATAGGTTTAAGGCGTCATGTGCATCTAAATAAAATGCTAAATTACAACAAATAA
GCTAATTGAACTCATGATTTTCGAAATGTTATGGTTTAAGGAGTTTATGAATCAATGTTA
ACTGTAAACTGGTTGGTTATTGAGGGGTCCTTTATCTGTTTCTGTCCAGACAGTCCACAG
GTACTTGACAGAGGTGATCGTGTGATATTTGCAATGTTCTTTACACTAACTGGATGCAAG
TGATGTGTGTTAGTCTGCCTTTCAGTTTCTTCCCTACCTTTTTGTTGAATGAAGCCTATG
TTTTGCCATATATGTTTCTTGACATTCCCTAAACTACTCCCTCCGTTCCTAAANNNNNNN
NTTTTAAGAAATTTCACTAAGGGACTACATACAGAGCAAAATGAGTGAATCTATACTTTA
AATTATGTCTATATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TATGGAACGGAGGGAGTAGATTTCATTCATTAATTGTTGATTAGTTGGTGTGATTCATGA
AAGTAGCATTTCTGTCACATTTGCGGGCAACTGGTATGTGCTTTCTCCACGTAGTCACTG
GCTGCACCAAACAATTTTTTTTGCGGGGTCAAACACAGCTTATTCATTTGTTTGCTGTAT
GACGAAAAATAATTTTGTATGACTGCGATTTATAGATAAAACAAAGGACACGCTGCAACA
TGGTACCTCAAATGGGTGTGATTCACTTTAACTTTTCTATCCATTTGCTCTTTCAGGGCC
GCAAAGCTCGTGCAAAGACCACGAGGAGCAGCACAGCTGGACGAAACAGAAGCAGCAATG
GTAACACAGCTTCTTATTCCCCATACTCGTAACGTCGTAGCGGGCGACGAACGGTGTAAC
TGATGGTGGCGGTGGTGGTGCAGGGGAGGAGCATAGCAACCATGCATTCCAGGAGTCCTG
ATCGCAAGCTGTGCTTCTGCCATGTTATCGGTGCCTGAGCGCCGTATGAGGGCGTTACCT
TGATCAATGTGGCTTTGCATGCTATCTGTAGTCCTGTGTATATTAAGGTTTAGAGTGTTT
TGCCTATTAATGGATTCTTCGCCGTCCTGTATAGTTAATTCCTTCCAGTAGTACAGTTCG
TTCCAGCAAGTTATTTGGTCTGGTGTGTAGTTTTTAGGCCTGTGTTCCCAGGCGATTTGA
TCGCCGTCCTGTATGGTTTGGCAGAGATAACGCGATAAAAAAAGAAGATGCAGACACCAC
TGTACGTACACGCATACAGTTTGCACTGCCTTATACTCCTTCCGTTCCTATATACTCCCA
ACGTTCCTAAATATAAAATCTTTTTAAAGATTTCAATATGGACTACATATAGAGTAAAAT
GAATAATTTATATTCTAAAATATATCTATATACATCTGTATGTGTACTTCATATTAGAAA
CACTAAAAGGTCTTATATTTATGGAAGGGGGGAGTATAAATATTTTTAAGATTCCACTAG
AAACTACATATGAAGTAAATGAGTGAATCTACGTTTTAAAGTATGTCTATATACATCCAT
ATGTAGTCCGTTAATGAAACCTCTAAAAAAACAATGCAATGTGCTTAAAAAAATTGAGTT
TAAAGTATGTATATATTTAAGAACAAAAGGAGCACAATGCAATGTGCTTAAAGAAATAAA
TTGACTTTTTAAAAGGAAATTGACTTTTTCATAAGTAGCGGCCCTTGTAGGCTCTTAATT
AGACACCCTTCGGACAATTGTCATGTTTTGACCTTTTGCCCTAAGAAATTTCAGAATTGA
CCTTACTTTCAAAAAAAGTTTAAATCTGATCTCTTTTGGTGACGCCGACATCCGTAACGT
CTGGTTTGCAAGGGAGACGCCAAGATCCCTAGCGTTTGTGTACGGGCTGGCATGACCGGT
TAACCCATTGAGTCTCTAACGTGGCTTGGTATCAGAAGCCACGGACCCTCACGTCTAGTT
TTGGACCAGACGCCAAGGACCTTGGCGTCTGGATGACGTGGCACATATTATCAAAAATAT
ATTTGTGTGATCTGTTGGGACCAGATGCCATGGTCCCTAGCGTTTGGTACCACACGCCAG
GGACCTGACGTCTGGTCCTTGACCACACGCCACGGACCCTGGCGTCTGGTCCTACGCCAG
GGTTCGTGACATCTGGTACCAAGCCACGTCAGAGACTCAACAGTCAGCCGGTCATGCCAG
CCCGTACCAGATGCGAGAGACCTTGGTGTCCCCCGTGCAAACCAGAAGCCATGGATGTTG
GCATCATCAAAAGAGGTCAGATTTAAACTTTTTTGAAAAGTAAAGACAATTCTGAAATTT
GTTAGGGTAAAAGGTCAAAACAAAAAAAATGTCCACACCCTCCTATATGTAGAGATAAGC
GATAGTGTTTAGAAAGAAACTTCATTTATTTCATTAAGCACCTTATGTCCTTAACCGCTA
TGTACTATTTCCTCCGTTTCTAAATATAATTATTTTTAGAGATTTCAACAAAGACTACAT
ATATGTATATAAACGTATCTTAGAGTGTATATTTGTTCACTTTTGTATTTAATTCATACT
AAAACCTCTAAAAAACTATCTTAGAGTGTACATTCATTCATTTTGCTACGTGTAGTCCAT
ATTGAAACCTTTTAGAAGACCTATATTATGGAATGGAGGCCCTCCATTTTTAAATATAAG
TCTTTTCTAGATATTTCAATACGAACACGTACAGATGTATTGTCACAGCATGTGTTTGTA
CCACTTTGCCACACTATGTTTTACAAGAATTTGTAACCATTTAAAACTTTTTGTGTGCAT
AAGATGATTGAATTGTTTGTTATGTGTTTGTTTGCCTATTTGGGTTTTTACTCACAAAGA
TTATTCCCTGTCTCTCAATACTCATTTTCTTTCTCCAAATCCTTGCCCAATGATCACACC
ATGTGTATAGGACCTAAAACCATTTTTATAAAATTTTATTTTGACCAAAAAGCATTTAAT
TATTTTAAGCCTTAAAACCCCCTTGAGTTCATATTTGTACTACAAGTCCTCTATTCAGGA
TGAATTTTTGCCCCAAAGACTTTATTTGGATCCCATTATCAAAAAGACTTCCCAAAACCA
CATAATTATTATTCTAAAAGTTATTTTTACTATTTTAATTAGAAACTTCTTTCTAAGGCT
AGAAATGGTCTTTTGTGAACAAAAAATATTTTCTTGCTTTAAAAATAATTGCGAAAATTT
AGGGAAACTCACTCGACATATATTTTCCATATATACGAGTTTCAACACATGGTCATGTTG
AAAATATTGGACAAAAACCCTCGAAACCTTTTCTGTCTATTTCAAGCTTTTGAAATATTT
TCGTAGGAAATATTCTCAATAAATTCTAAGAAAATTCTAGCAAGTCACACATGCTATATG
TGATCATCTTATCAAGTTTCATCCCAATACAAGTTGATTTGGTTCACCAAAATATTCCAA
AACCCTCTCTGTCCAGAACCAAATTTGAGAAACTCTACATTGCCATGTTTGTCCAATTGC
TCTCAAACTTTGCAGGAGTGCTCTAGACCCCAAATAGTGATGCTACACCAAGTTGTGCAT
TTGTGGGAATTGATTTACCTAGCTAGATCTACAGAAACCTCATTTTGTTGATTTCTAGGG
TTTTCTATGTTTGCATTGCCAACTTCCACTGAATGAGCCGAAAGTTAGTGATAAAGCTCA
ATTATTCCCATCAATTGATACTGTTAAATCTGACAGTAAACGGGAAAGGGTATCTTGCCC
AAAAAGGCATCATACACCTTCCGGTGATTCTCCAAAGTGGCTGGTTTCACCACTTAACTT
ATTCTGCTTGCCCCCAAAGTTTTACCACACCTCCCCTGAGACCCAAAGCATCTCTAGTAG
CCACCCCAATGGCTAGATGCATGATTGAGGGGGTGAAAGTCCACTTGCACCTCTCTCGAC
AGCAAAAATTTCCTCCCCTTTAGCTTTTTCTCTTCCCTAGCCTGCAACCAGAGCATCCCA
AGCTCTTCCCCCCTTTGTTTAACCCTCATGGTGCAAGTGGCCGCGCGAGAGCGCGTCAGT
GGCATCATCATGCCGGCAAAAAATGCACTCTGGAGCGTGCTATAATGCACCTGAGAGATG
ACTTTGCTCAAAGCCCATCCCCTTGCCGCCTCGAGCCAATCCCCTCGCGCCAGTCGAGGC
TTCTCGGTGTCCGCGACACGCCAGAGTGTCGGGAGCCCTCTCTCTCTCTCTCACCCTCTA
CAGCGCGCGCCCGTGGCCGCCCGAGCCGACCAATGTGTGAACTCACACACGCGCAAACCT
CCACTCGCTCTCCTCTGTCCCGTGGTCGTAGACCAGCCCCAGGAACGCCCCCGAGCAGCC
TGTCCCTCTTATGTGAACCACATCATCGCTTGCAACCTCGTCGGCGGACGGGTCCATGAT
GAGCCTGTGCCGTAGCTATATAAAGCCACCCAACCTCCCTCCTTTCCCCCTGAACTCTCT
CTCCCTCCCCAAATCAACCGCCTGGACCACCAGAACCAGCCCAAAGGCATCGGAGCTTGA
GCTCAAATAGAAGGACCCGTTGTTGATTCGGTCGGCTCGACCTTCCCCCATCGTTCTTCT
TCTTCGATTTGGAGCCTCTGCGTCCTCTTGATCCTTCCCCCCCTCTCCCCTTCACGTTTT
GAAGTCGGAGCCGATGCAAGCGACCCCTCCCAAAGCTCATCCACCACGTTCTTCATCATT
GACGAGCAGTTGCTCCTCCCCATTCGCCTCCACCTCCCCCTGGCCGACGACTCAGCCCTG
CATCCATCCCCGTAGCTTCCCCGGCTTTTCGTGCACTCCTCCGTCGCCAGTTAGCATCGC
CCCCTCTGTCGCGAGGAAGGAGATGACAAGCGGTCCCCGCTTGTCATCCTTCCCTCTCGC
CCGCACCCTCTCTCTCTCGCTGGCACCAGGGGCCTACCTGACGGGTGTAAACCAAGGGAG
GTGTGCGCTTCGCTCGCCTAGGCCAGCTCGGCTGGCTAGGCCTGGCTCGGCTAGGCCAAT
TAGGCCCAGGAAGCACAATGCCTTTTTCCATTTTTATTTCCTCGCAATGTAGCAATAATT
CCCCAGACTTACATATATATCCAAACCCAGTTATTCCAATTTCTAAAAATTTGTGATAAT
ACAACCTACTCCCTCCGTCCCAAAATTCTTGTATTAAGTTTTTCTAGAAATGGATGTATC
TAAATACTAAAACATGANNNNNTACATTCATATCTAAACAAATCTAATACAAAATTTTTG
GGACAGAGGGAGTATTTATTAGTGCCACTTGTGCAATTTTTGAAAAGAGTTTTAAACACT
GTTTTATTTTAAAACTTTGTTTGAAGCATTTTAACTTTCTGCTAAATTGATTTTCACAAA
TTTTTACACGTGAAAACTAAAACCAAATATTTTTTACACTACTAATACTCACCCTAGTAT
TTTACAAAATAAGTTGACATGTTTCTGAGTGATTTATTTTCTCTGTTTTTGTTGTGCTCT
TATTTTTGCTTGTATTATTCCGACAAATAGATTGCATTGTTGACGAAGTGCTTGGATCGG
AAGACTTTGAAGACCCTAAGAACTTTGTTGAGGAAGGCAATCAGCCCCTTGACCATGACT
TGAAACCCTTTTGCATGGCATATATCACTTACTTTTTGCATTGAATCATGGTGACTATGG
TGACCACCTCTATGGGTTGCACCCGTTAATTCCTCGTTGATACTAGCATTGCATAACTCT
ATATGTGTTTAGAGTTGTGCGAGCGGGAAGTAGATAGATTGCTATGTAGTTGCTACACAA
ATGGGATGGGACTATGCATGGTGATGGAAACAGTCGTGTTTTCAAAGACTTCTCGAAAAT
CTGTCGGGTGCCACTAATGCCCGAGGAAGATGGTGTTGAGACTAAGTGACCACTTGAGAA
AGAAGTGGTGTACCAAGGTAGATGTGTGTGTGTTTTAAAAAACAGAGAGATTTATGATTT
GTCGACCGTCCCNNNNNNNNNNNNNCAACCACGATACCCCTTATGGTACGGGGCGGGAGT
GACGTGGTCACTCTC