Contig Data
morexGenes
Links



Map Locations of contig_38474 (5228 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38474

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53568 1 1898 bp MLOC_53568.1 Available Available LOC_Os03g02710.1, FRAME:-1, EVALUE:0.0, 13103.m00242 protein hydroxymethylglutaryl-CoA synthase, putative, expressed





CDS Structure of MLOC_53568






Contig Sequence (5228 bp)

>contig_38474 5228 assembly3_WGSMorex_rbca.fasta
ATGCATGCATGAGAGAGATATGTAATGGGTGATTAACAGAAGGTTTATTTTTGCATTGGA
ATGTGATTAAGTGAGCCGCCGCACGGCAAGACGGAGGTGTGGCGCCGCTCGCTAGCGTTG
TCCATGAATTATACAATCTTCAACAAGTCGGATTGGGGAAATATATTTCAAGTCTTACAA
TGCCAAGTTGTACAGCTGACAAAAAGTGTTGCGCGACGATTTTGCAACATGAAAAGTGTT
GCAGTTGTTCAAACCATTTGCAACGCGTCCTATGTTGCGACCACAACAAATCCATGTCGC
CGCTACCCTAAGGTAGCCCTTTATCACAACATGGGCCATGTTCCAATCTCAAGATGAGCA
AAACGCACAGCTAAAACGGTGGTCATGATGCAAAATCCGAGCTGAGCTCCTTCTTGTCGC
CGCCGTCCACACAGGGGACCTCCCTATAGTACCACGCACCACTGTGTGCTACGAACGCAA
CACCCACAACCCCTCCAATTGCATCTTTTTCGTCGGTTGGCGATGGAGCGGCCACGACTT
CCTTTGTGGCAACAGTGTGGGGTGGTGCCGCGGTGACACTTAGCGATCACCTCTTGTTAT
GGCAGCCCGATTGAGAGCACCACAGATGGCGCATTTCTTGACCTTGGCTTGGGCGGAGTG
AGAGGCGGCAAGCGCATCCTCCTCGGCCTGGCGAGTGCCACGGGCGACACACACCTCCTC
ACCCTTGGTGGAGGTGTGTGCTCAAGCGATTGCAGGACACACACGGCTGGAGTCTAAGAG
CACGACGAGTAGTGCGAAATGAAGAGGCGATCGCCAAAGATACAAATGACGAAGGGAGGT
GGGTGGCATCCGGTTTTAAAAAAAAGGACAGTGGGACGGCAAATGACGGCAAAGTAAAAA
AAAAAGGTTAAAATGGATGGGTTTTAGCTTTCGGATCTAGTGTGGCAGACATTTCAGACT
CACCTATTCCTCCGTTCAATTGGGACCGGGAACTTCGGCTGTCCAAGCCCAAAAGAGCCC
GTTGGATTGTTAAAAAGTTTTTGTACCGAACAATTCGAGCAAATAAAGTAGAAATGAATG
CCCATTTTGGAGATGCCCTAAGAGCATTGGTTGATACTGGCTCTATCTGGTAGTCATATA
ACTTATAGCCAATCAGAAGTTAACACATACAATATTTAGTTATAATTATAATGATTAATT
ACTTGATTAGTACTTGACCCATCTACTCCTCTCAAAATGATTCTTGGAGCTGGCTCGTGC
TTCTCTTCTCTACTTGAACTCTCAAAAGTCTGATATGCCATTCTTTATTGCTCGTCTACG
GCATTCTATTGTATGTGCTCTAAGAATGCAGACCTATGACCTGACTAATTCAACTGATAA
GCCAAACATGTCACCTGCCATGTTACGCACCATAAAGCTGTCCGTGTGAGTCGGCGAATT
ATTCATAAACGTTACAAGTTTACAACCCAGCAGAGCACGAATGTTCCACTACAGAGCCAA
GAATTCTCACTGACAAGGCATTACGACAATGGCAGCTCTATCTAACTTTACAAACTTAAT
CTGGGCAAGCTCCACCCTTCCCTTTCCCTTCCCTACCAGATAAATAATCTAAGAGCGCTT
GCGGCGCTTATTGCAGCTTCAGGCTGGCCAGAGTCAATCAATCAATGTCCATTGGTTATA
GGAGTGGCGGCCGCATCGCCTTTCACGGCATAGAACCGGCGGTACATGGAGTCGACATGG
GTGAGGTAGTAGGTACCCGGAACGAGCAAGCGCGTGTCCTGGCTGGTGATGAAGTCCTTG
GCGCCGTAGCGGTGCTCCATCAGCTTCAGAGCCTCGACAAATTTCTTCGGTGGAACCTGC
GTGCAAGATGCACAGTGAGACAGAGCCAAGTTTGAGGTTTGCAATGAGTAAGATACTCTG
GTGCTAGATGGAGGTTCATGAAGGATCGACTTACCACATGCCTAGACTCCAATTTGTTGG
AGATATCCAGTATGCTTGCAATATTCGATAGGCTGAACGGATGCTCGACTTCATTGATTT
TTAAGGAGAACATTGTCGATGTCATGCCACTGCCGTAAGAAAACATGACGATTCTCTGGC
CCACCTGGAACATTTCAAAGGAGGAAAAAAAAAAGAGGAAACTTAGTTCAACAAATATAG
ATCACGATAGAAGAAAATACAGTCGTGTGATTTATACCAGAGCATCATGTTTATTGTGGA
CAACTGATGCAAAAGCAGCATAGAGTGACGCCGTATACATGTTCCCGAGTTGCTTTGGGA
TCAATGTTGTTGGCTGAACCTTGGTATCATACAGGGGCTTCGCAACTTGCTGACATACCT
GCATATTTTGAGGTAGCATGGATCAACTTACAATCATGAGTTATTGCGTAGAGGAGTAAT
TTTGTACTATAATTTAGCTCTTACTGGTACCTTCTCAAGGTCCCGACTCTGATAGCTTTC
TTCGGATGACAAGCCCGAGTAGGGCTCCAATTTTTCTCTCGAGTCTTTGTCGACAATGCT
ATTTGACACATAAGAAATTTCAGTTAGTAAGCAAGTACTAAATAACATACAGGCACAGAG
TTCCTAATACACTAGCTGTCTAGCTGACCAACCTGCAGTTTCTCAAGAAGTCATTATAGT
ATAAACGAGCAAAACTTTTCTGTACAAGCTGCACACGGAACAAACATGGAGAACTTGTAA
ATATATAAAAAAAACATACACAGGTAAATTGTATGGAGAAAATAATATGGGGTTTTATGA
TACCTTGTTGTATGGAGAATGAAATACAAAAGAATCTGCATCGACGATTGAAAATGGCTT
CCCTTCAATCTTTTCGTACCTGAAAGATCAAAGCAATGGGATCTGGTTAAATCAGCTGGT
CAACTTGATTGACCTGTTCAAGTGAGGGGATGACAACTTACCTTTTGCAAAAGGTCTTGT
AGCAGGAATCCAGTGCCATGAGATAGCATGTCTGTGATAGCTTACCATCGACCACCTGCA
TGCAATTTTGCCATCTTGTCAAAAGGGATGTTTAAATTGGCAGATAAAGTAAATTCATTT
CCAGTGTATCTCAAGCTTGCTCTGCCTAAACAGAATTTGGGTTCATAGATTTTATAGAAT
GGTGATGTACCGGATATTCGCTCGCAAGATCAGGCTTGTAGAAGTCATAAACATGCGCCA
TATGAGACCCTCTAAACTTGCTTTCAAATGAAATAGGAGCATTTGGTCCAATCAGCATTG
CAATAGCAGCTGCACCGCCAGTAGGACGAGCCGGTCCTTCGGCATAAACCTGATAAGGCA
TCGATCTAACATGTCAGCATGAGATATACTTTTTACCATGGTCGGTAAGTAAGGATCACT
ATGGTTGTCAAACATCAGAAATAAGAAAACAGAATATAGAGCAGGCAATTCTGCTTGCCC
TGAACATTGTGACATGAATGCATATACCCGTGGTCTAACTTCTATAAAATGCGCGATGTT
TTGAACTGGTCTGCAAAATCGTGCAGTACGAGACAGGATACTGGAAAAGAAGCATCACAT
ACCGCACTGTCTGTGCAAACAACAAGTCCATAACGTCCATCCCAAGAGTTGCTCTCGACC
CAATTAACACAATTAAACAAAGCAGCTGTTCCACCATAGCATGCATTTGAGGAATCAACT
CCTTCAATATCAGTATTACCACATTCCTGCAATTAAAGAAAATTGTTACAAAAAGAACAT
CACCAACAGGAATTGTCTGGTGGCAAGTTGAAGTACTAGTACTACAAAAATCTCAAAATA
ATGCCTAAGAGTTATGAGACATAAAATACAGTTGCTTTATTTTTGTTATATATGTTAGGT
GCGCTAGACCAAAATACACCAAGAAACAAAAAAGTAATAGAAGATATTAGCATGTTTTTG
CTGAAAGGAACAAACCTCAAATATTTGCATCAACCATGTCTTTATAGACTTGCTCTTGTC
TATTACAGTTTCACTGCCAACTTCCAAACGTCCAATGCACTTTGGATCGATGTTATAATT
TTTCAGGAGGGACTTCACCACTGTCAAGCTGAGAAAAAAATCTTAATCAGATGAGATAAA
CATAACTAAAAAGGCAAACAAGACATTGTTCATACGTTTAAAACATAAAATGGTTCACGT
CTGGACATTCAAAACGTTATACTTTTGGAGTTCAGAGACAAATATAAGGCATCCCGAAGG
GCACTACACTGGGCTGTTATATTCACATCCATCTATATTGTACTTTTCCTCTAACATCAT
CGGTGGTCATTAGAGCACTGGTGTCAAATAGTATAGCTTAAAACAAGCATGTCACATGTC
ATAGTTTTCTATTTAGATTCTAAAATTGGCTCTCATCATCATAGGTTGCACAAATTGGTT
GATGTTAACTATATATATGGCTCCTCACATTTCAAACAATGATCTCCGGGAGGTAATAAC
AGATACGGAGGAGAATAAGTCCTTTCGTGGAATAAGTGCTTTCGAGGAAAAGACAGAGAA
AGATAGCAAATGGGAGTACTTTGTACTCAGGAATAATCATACCTCATTGAAATGACATCC
TCCACTTCAGTGCAAAATGCCATGCTATCCTGCCCAAGCCCAATGGTGTACTTCCCTTTG
CTCACACCATCATGAGTTTCCAACTCTTCCTGCAACCATCATCATGTAAGATTTCCAGCT
AGTGAAGGAACTTCTTCTTGGAAAATAGTAGAGAGTATGAAATAAAGCATTTATCTGCAA
GTGGGATCAACAAAAACAAGAATGAAGAGATACTGCAAGAGATCTTGTAAGTTTTCCAAA
TGAAAACCGTACAAGTCTTAAGGCACCATTGGGTAGTGATGGGCTGCTGTAGAGTGGCCT
GTAAATTCCTTATTTGACTTAATTCACAGATTCTTTTCTGGTCAACAGAATCTTATAAAA
GAAGACAGATCAGTACTTTGACAGAATAATTCTCCAAGAGGACGATGACATTTAAAGCTT
GAACATACTGATCTCTTAGTTCCAAGACAGCACTGTATATTTCAGAACACCTTCCGTTAT
GTAACACAAAAAAAGTTCAGACATATCGCTGACATCAACAAATCATCATTCTTTTAGTTG
GGAAGATATGTATCCTTTGGTTTCTGTCCGTAAGCTGGTGAGGGAGGCTTCTGATCATAA
TCCCTTGCTGTTATCCACTGGAATGGAGGTGAGAAATGCTCCGGGGCAGAGAGAATTTAG
ATTTGAGC