morexGenes - Barley RNA-seq Database

Contig contig_38442
Source Contig contig_38442
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38442 (9136 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_38442

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53533	4	5124 bp	MLOC_53533.1	Available	Available	LOC_Os08g07840.1, FRAME:-2, EVALUE:0.0, 13108.m00805 protein PolI-like DNA polymerase, putative, expressed
MLOC_53532	1	2715 bp	MLOC_53532.1	Available	Available	LOC_Os04g54510.1, FRAME:+3, EVALUE:8e-144, 13104.m05639 protein mTERF family protein, expressed
CDS Structure of MLOC_53533

CDS Structure of MLOC_53532

Contig Sequence (9136 bp)

>contig_38442 9136 assembly3_WGSMorex_rbca.fasta
CCCGGGAAAAGGAGCCGCCGCACTTCATGGCCGAGTACCTCGTCACTACCTGCGGCCTCT
CGCCGGCGGCGGCCGCCAAGGCCGCCCCGCGGTTCGCGCACCTGACCTCCCCGGAGCGGC
CCGACGCTGTTCTCGCCTTCCTCCACTCGCAGGGCCTGGGCAAGGCGCAGGTGCGCGCGA
TCGTGGCCCGGAAGCCGGCGCTGCTCCTCAGCGACGTGGACGCCACGCTCTCCCCCAAGT
TCACCGCCATGCGCGCGCTCGGCCTGCGCCGCGCGGACTCCGCGCGGCTCTTCGCGCTCT
TCCCGGCGGCGCTCACCTACGGCGTCCAGTCCAACCTGCTCCCGCGGGTCCTCTTCTGGC
TCGACCTCCTCGGGTCCACCACCTTGCTGATGAAATGGCTGGCCAAGACGTGGCTGCTCA
AGTACTCGGTGGACCTGCTCCTGCGGAACCTCGCCGCGCTCCGCCGCCTCGGCGTGCCGG
ACGGCCGCCTCACGGCCGCCGTGCGCCTGCGGCCGACGCTCATCATGCAGTCGCCGGACA
AGCTCCGGGCGCTGGTCGGCCGCGTGGAGGAGGCGTGCGGCGGGGGGCCGCCCAGCCCCG
GGATGTACACGTGGTGCCTCTTCGCGCTGCACAACGTCGGCGACCGCGCCTTCCGGGCCA
AGAAGGCGGCCGTGACGCGCGCCCTCGGGTGCACGGACGAGGAGTTCGCCGGCATGTTCC
GGCGCGCGCCGTGCTTCGTGTTCGCACCCGAGGCTCTGCTGCGGCGCAAGGTGGAGTTCC
TGAGGGCCACCGTCGGGTGCAGCGCCGGGAGCATCGTCAGGAACCCCCTGCTGCTGACGC
TGAGCCTCGACGAGCGGATGGCGCCGCGGTGCCGCGCCGTCGAGGCCCTGCGGTCCAGGG
GCGTGGACATCGGGAAGGTGAACATGGTGGGCATAGTGAGACTGCCGGAGGCCATTTTTG
TGGAGAGGTACATTCTCAAATACAAGGGAGATGTGCCTGAACTCCTCGATCTGTATCCTC
AGGCTCGAGTGAAGGGCAGAACATAAAACAGGGCATTTCGTTCTGCCACCATGTTTATGT
TATCACCATTTCGTTCTGCCACCATGTTTAGGCCAGAACTTGTGCCCAGCCATTTCATTA
ACATCATATACATATCTGATCTGATCCATCGTTCTGCATTTTGTGTGGAGTTTGCAACAT
AGACCGAGTTACAAATACAATTATGCAACTATATTAACTGGCAGTGGCATTCATCTGAAT
TTCCAAATTCCATTGTTTGCATCTAACATCCTTACGCCGGTCAAGTTTAAGAAATATACT
GAATGTGGCATAACACACGAGTCTACCAGAACCGGAGAGGGAGAGTTGCCATGTTCAAAC
ATGATTCATTTACTGCAAAGCTGGCAATGCTGTTGTGTCAACGATGATGCCACCAAACTG
ATCAGATCCTAGAGGAAAGCTCATCATGAACTGCATTTCTCCATTGATCGGAACAAAGTT
ATATCGCCATGAGCCCATGATCGTGTCCACATCAGGGAATATGTTATCTAACCTAATACA
TTAGCACACTGCAGCAATCTTATACACAAAATGCATGCCAATCTTAACTACAATCCCTCT
AGCTCGATTCAGAGTGCCTACTAGGAAGGGTGTGGAGTCCAGCTATCCAGCCTAAATGGT
AGTGTACAATGCCTTCGCTGCTAATCTCACTTTTCTGCTGCCATGGCAGGATGAGCCTTA
TGCATGCCCTGTGCTATTATGCAGCAGTTAACACCAGCTCAGGACGGACCAAAATTGGCT
GGAGTATGTGCGCATCTGGGGCGCACCTACGCCTTGTTGGGGAGTCGGCGGAGGGGGTGA
TGATGCTCGGAGTCTACTTGGCCGCAAACCAGTTCTGTGCACATTTCGCATCAACAGCCA
GGTCGACCGACAGGATGTTGGTGCCGTAGAAGGGCTTAGACATGCACTCAACCACTATTG
CCTTGGCCACGTCAGCCGACTCGGAAGGTCCTTCGAGTATCACTTCATCATGCACCTGAA
AGATGTATCTGTCAATTCTAAATGTCGCAGCTGCCAGATAAGAGGGCAAAGAATTGGAAC
TAGGTGCGGCATATTCTCGCAGTCAATGAACTCCAAATCTTGAGAACAGGCACCTATTCT
GGGATCATCAAATGCATCCCAGTTTGACTAGCCGAAATACCAACAGTGAAGTGGCATAGG
AAAACACATATACCATATTACCATACATATTATTACTTTCACTATGAAAGTTCATGCAGT
ATATATACCTGCAACAGGAGGGTCCAACCGAGCTCCTTAAGACGAGTGTTCCTTTCTATC
TCAATCATTGCACACATGGCAACATCTGCTGCACTGCCCTGTGATTTTACAGAAAAGTAC
AATTTCAGTTAAATCAAGCTTGACCATTTCTAAATTTGAAACTGGACAAGAATTACCTGT
ACAGGGGCATTGATAGCAGCACGCTCGATGTGCTTCCATGTTTTGGAGGTTACAGAAGAA
ATGCTGGGGAAACGGCGAGAGCGTCCAAGCAAAGTATAAACTTCAGACTTCTCATATGCT
AATTCTTTCTGTTCCGTCTGCCATGCCAAAACTTCTTTTCTGTCACTGTACCAGAGATCC
AGTGTATCCTCTGCTTCCCTACGTGATACCTGCAAAGGCAACAGATTACAACTTGCACGA
TATTTTTGGGAAAGCCATAAGGAAAAGAATAAGGTTCTGTTCCATTAATGAGACATAATT
TATATCTGCATTCTGTTAATCAGATAACTATTAAAATCATTGAAAATGTTAAAGGTTTCA
ACAGTGAATCTAGTGAACATGACTAATCACTATTTCTGGTTTCAACAGGCCATTTTTCAA
CAGTGAACCATCTAAGGCTCTAAGCTGCTGTGTGTGCACTGAAGTTTAATTTCTTGCTAT
TAACTGAGAGGTGTGTTTGTCAAATTTGTACCTTCCAATCCCGAGCAAGCCCAGCAGCTG
TTTTTCCATATGCAATGGAGAAATTGAGCATCTTAGCTTTCCTCCTCTCAGAACCAAACG
CATCCTAAACCACAAGTTAACACAGTTCAAATCCAGACAAGTAATCTAAGCTTTACATTT
TCTGTATCCAGTTCCATAGAAATGACACAGCATTAAATAGAGCATCGTGTGAACTGAAAC
AGATTAAAGTTAACACAGTTCGAGGTATTTAATTTAAGATACAATGCAAAAAGAAGAAAA
GGGGGTGCAAAACAGATGATACATAAAACACCATCTATTTGTAACTCAAACTAAAGCTAA
ATTCAGGCTCCAAACAGATGTCACACTTGTACAACCCCCAAAAAAGGAAAGTGAAAAAAG
CATTGAATGAAGAGTATACAGGCATGACATCTAAAAACAGAGCAATCATTAAGAGTGTTC
ACATAGATGTATGTACACCAATAATGGAATTGAGTAATCACAAAATATAAATCCTAAAGG
TGATGCTAATTATAGTAAACTCCACAGGATATGAGTTATGGATTCTGATTCTCCACCATG
GTTTTTGACTCGCGCGACTATTCGTCGGTCGACGAGTCGCACTGCCAAGGTTGACTCAAA
CCCCTCGACTAGTCGAGACTAGTTGTGACTCGTCACGAGTCACTACCCCAGAACGACTCA
TCGACTCGAAAACCATGTTTTCCACTGAAAAAGGGTAATCAGACTACTACTGAATGATGC
AGAAAGTGAAAGAGGGAAGGAAAACAAATAAAAAATATGGATGTCAGGTCATAATTAATC
CTAAGACAAGAGAACAGTCCACTTTTCAATCCAGAATTCTAGCAAAAGTTTACTTTCCAG
ACTTGAAAACTGTTTTAGATGGTTTTAGAGTTAGGGTTGAAAAGTGAACCTTTTCTAAAT
ACTACTACTATTGAAACTCAAGTACCTTCAACATTGGCACCGGGGGTTTCTCTTGACCGG
GTTGAGGATCCCACTCAAGAAGTACTCTCTTTTCTTCAACGGCGTCACGAATGTGCTGGT
ACATATTCATCGCTGTCCTGGAATGGAAATCACCGCCAGCTTTGAAGGCATCTAACATAC
TTTTACAATTAGCAAGATGTGCCAGGATCCTCAGCTCCAGCTACAGGGAACAGAAGTATG
TCTTTTTAACTGGATCAGTTTAAAAACATTTGGTGATCTTTTTTGAGTGATACTAGCATA
CCTGACCATAATCAGCAACAATAAGAGAGTTCCCCGGAGCTGCAACAAAAGCTTGCCGGA
TTTTGTACCGATCCTTTTCAAGTGCAGGTTGATTCTGCCGTTTAGGAATTATAAAGAGTT
CAGTAAGTTATTTGGGTTGTCTATTGTAAATACTACCAACATCTACAATAACTGCCCCAG
AATTTACAGCATCTAAAACCATCTGTTAGGTATGACATCAAATGATGCAAACATGATCAG
TTTACACATGCTTATTTTCGACAAAGCTCCATTAATTAATAAAAAGGGCCAATGACCACA
GAGCTAGCTTGATTGGGTAGTTTTATTTAGCAAGTGTTAGTTACTTGAGGGGTGCCTGAA
TGGACACGCTAATCATCATGATAAAAATTCTCTGAACAATCGTAGCAGGTGTAAACTTCA
ACTATGTGCATGGTCATCCATCTGCATATCGGACCTCGGTAATTAACATCAGAACTTTGC
TAACCTTGCAGTGCTCGCTCAATAGCGCGCATTGGAGTATCAGAAACTGACACAATCTGA
ACTAAACCGTACATGAACAATAACTATCACATATTGAGGCTCTATTATGAAGTTTATTTC
AATATTATAAATATGCAGATAGACTGTAAATATTCAGACTAAGTCTTGACCTCGAGAACA
ACATCATATAACACAGGCATGCAAAAACTGCCCTGACAAAAATGCAAAAGACAGTAACCT
GTAAATTCGGCGCCCTTGCTGACAAACGTCCAGTTTCGGTGTTGATATTTAACGAACAGT
GGATCCTCCCCTCCTTACAGGATATACGATTTCCCTGTGCGGGCAAGAAAGATATTTATC
ATTAACAACTAGACAGAAAAGTAAGATGACAGTAGCCACTAGAACCAACTGGCACACATT
GTCACTGAAGAGGGAAAACTACAGCAATCTACATTACAAAAGTGGAGCCACCTCACCTGT
AAGGGAAGAATAAAGTTTGATATCAATGAATCAATAGAGCAGATCTCGCAGAGAGCTGCA
ATGGCATAACATGCTTCCTTTCCTTCCTTTCCACCTCCAAATGCTTTGTATGCAGTGCCA
TACGAGGTAGTGTCTTCTACAACATCCACAGAAATTTCTGAATCACTGACATATTCATCA
TCCTCTGCATCCTCTGTTGTGTAAAGATCAGTTTTCAGTTTCCCAGCCAAACTTCTCAGA
GCATCCCCACTGACTGAAGGCCAACCGCTTGCAGTGAATATCTCCGGTTTTAGACCTTCC
ACAATACTGCAAATTTCAATAGTGCGATGCTTTGGAGCCTTCTTGCCCTCTGTAACTGTG
TTGACATTATTTGGGACTTTCAAAGTTCTACTCTTTGGCAAAAATTCACCAGGGTTGCGT
CTGCAGAATGATTTAGTAAGAACAAGGGTTGCATGAACACACAAAATATGTAGTCTAGAT
ACAAAAGGTAGACACAGCAAGTCACACTTCTATCTCTTTTTCCTCCCAGTGATTTTAAAG
GCACATGGTTCATACCCGATCAGAATTCAAACACATGTGAGATGATAAACATGTCTACAT
GAATAAATTGACAAAACAATGGGTCAGTGTCTACTTTAACTACGTCCTGACAAAGATCCT
AATGTCAGATATTTTCAGAGAAATTGTCGCATTATTTATATATCAAAATCAATATATTAA
CAGAGACAAGAACAGGGTGATGATCGTACCTATTTTCTATGCCACCAAAGAAGAGTTGGC
GAATCTGGGTATCACTATTAACATTCATGTACTTTGCATCAGGGCAATATTTAGATGCCC
ATTTCTGAAATTTATCTGCAGCTACTTTTCGCTGTGCAACAGCAACTTTTTCAATCTCTG
ACAGGTAAGAACGGTCGACAAGCATTCCAGCTGTTTCCATTTTTACAAGAATGGCGCCAA
AAGGACGCCAGTACTCCTCGTAGAAATCATACAATGAACCTCTGGGGCAACCATCAAAAG
TCCAGTGCTTTTTTTCAAGCTTACTTTTCAAGCTTTCATAAAGCCTCAAGGTGCTCATTG
AATCTAAAGAAGAATAGCTGATCCACAGCTCTCTGTCCTCTCTTTGCAAAATCTCAACAG
ACTCTATGGTGGTAATTTTTCCTTCGGAGCCATCTTTTTTAATCTTTTTCCTGCCAAAGA
TGGTTTTCATTGATCTCTTTCCAATCTTTTGTAGTTCCTTTGGGACCACACCCATGACTC
TGCTGTCATTTGTGAGTCCTTCGAGTGAATATCCTCCATCAAGTCTTCTTGAAGAGTCCC
AAAGGCGTGCGAGATGCATTGTATCGGCATGAAATCCAGCAACTTTGATTCCATAGTTCT
CAATTACATGTTTATCGAAACTATAGTTGTGCCATACCTAGATGAGGAAAACAAGACGTT
TGCTTTAGAAAACTCAAGAAGAAGCTAACAATGTAGATGTGTAATCATATAAGTTCATAT
AAGTAGTAAGGTTAGCTACGAACAATAAAAGACAGTAACATCAGTCCAGACTGAGGCAGC
ACATTTAGTATTCAACAAAAGGATCTGTGCATTTAGCTTAAACAGCTGATCATGATGCAA
TCGCACATTTCCTCAACTAGTTCTGTAATTGCCAACTTGCGACAATAATCTTGTTCTTTT
TTCCATTTGTAAAGCATTGGGCGTATAAAAGGAGAGCAACACAAGCACAAATGCATCTCC
TTGCACCAGAAAAAATAAAAGCAAGAAAGAAAGATGCACCTTCCGGATCGCTGAATCTTC
AAAAAAGGGAACAAACTCCATGAGGACATCCCTTCCACCATCCAGTACATCCACCCAAAT
ACATGTTTTACCATTTCCAAAATCAGCTTCAGCATCAGAACTGGCAGAATAGATGCTAAA
GCATGTGACATCTCCATGGCCAACTGGTGTCTCTTGTTTAACATCAATATTTGACACCTG
CATGGCATTGTGCTCGCATGAATTATGATGCTAGCTAGAAACCAGGATGAGCTCAAAATG
CAAGAACTTCTCAACATAGCTCAGTTTCCTGTACTATTATATATAAGTGAATCAAGATGA
CAGGGGACCAACTCATGCCGTTTACGATTAATGAGGACACCTATGACTTTTACCCTTTGT
TTGGCATGGATAATGAGAACTAAGAAGTAGCAAACTGTATCTGAAATATCTGGTATGGGG
TGTGGAATCATATGTAGAACCAGGAAACCACATAGTGAAGGAGGCAGTTTCAAGTAAAAC
TAGTATCTAGTGTCCAGTTGAAAATGTTAATATTAGACAACAAGTAATTACAGATAAACG
TGAACATAACCAATGTAGTCAGGAATGGTTTTTATGCTTTACCTCTGTGTCACATGCATG
AATAAAGCTCTTGTACTTTGTGGTAAGTAACTGAACAACGCTCCTAGCTGATTCGACCGT
GTCAACCACCAGAACTTTGTCGTAGATGGTAGCAAGAGCCTTCCGTGCATCTTTAGCCTC
CTCAGACAAGGGGGCTTTAGCTGGAGGAGGCTGCACCGCTGTCTTGGCTGTGCATTCATG
CTCAGCTCCATTATAACCATCTATAGCCAAGTCATCAAACTGAGGGATCTTCTTGACTTT
ACGAATTTTAGGGCTCTTCTTGACTTTACCAGTATTTAGAAGAGAATCATCAATCTCGGA
GCCATTAGGCCAATGCATCTCTACCTCAGAGCCACTTGGCCTGTTTGGCAGTTTGATGTC
ATCATTAACCACAGTTTTGGCTGTGCATTCATGCTCAACTTCATCATAACCATCAGCCTT
GCCATCAAACTGCAGGCCCTTTTTGACTTGACGAATATTTGACAGAGAAGCGTCAATTTT
GGAACCGTTAGGCCATTGGATTTCCACTTCGGAGTCACTAGACCTGTTTAGCGGTTTGAT
GTCATAATCCACAACACTGGTCAGTGCTGACACAGCACCTGCAGTGGGACTCAACACATG
TTGCTTTGCCAATTCCATATTGGTGTGCCTATTTGCAAGAGAGTTAGGAGCCATTCTTTC
TCTTACACCGTACAATGGAGACTGGTTGGAGCTCTTGTAATCTTCCAAGGGATCATGATG
AAGATTTCCTGGTCGCAGAGCATAACCATTATAAACATTGTTCATGACAGCATTGGTGGT
TTTGATGGAACATATCCTCTTGCTCTCCTCTTTCCATTCCTGCGCACTGCTCTCCACATT
GAAGTTGAAATATACTCCAGGTCTGAGGGCGCTATTGTCGTTGATTCCAAGGCCTGAACT
ATGAGAGTATCCCTGCCTGCCAGTCATAATCATTTCTGAAGTTAGGGACAGAGCACCAAG
GCAATGCATCAAACTTAATAGCTCAAATGTCAGCCCAGAGGGTAAGATGCAGCAGCTCAA
ACGTCGCCCCAGGGGCACAGATGCAATGCAATAGTTCAACTGAAACCCATACAGGCTACA
AAATATATGTACTACAAGGAGTATCAAATGGTAGCTCACTGTCTCGGCGTTGCTTGGTAA
AAAGCAAGGGCGTTAGCTCAGAAAGTGACACGGTAACACACTACTACCCTTCCAGCAGAA
ACACCACACAACCAGCAATCAATCACGGCCTTAGTGCATCGCCGTCAACACCAGCATCGG
CCTAACCTAAAGCAACACCCAATCGAATCACCCTAAGCATGGCGTACTACCCAACAATAA
ATTATAAATGTATGATTGACACCCACCACGACGGCACCATCGCACAAGCAAACGGCCAAT
AAGCGCGAGCTTTGCAGGAACAATAATTAATTAAGCAGGCAGCAGCGGTAATTAAAAACG
AAAAATGCTACGGGGACGGGGGGGCGGGGGCTACCTCCTGCCGCCGAGGAAGTGCGAGGC
GCGGCGGTGGTGGCGGAGGAGGGGGGAGAGGGTCCAGAGGGGCGCGGAGCAGGGGCACCT
CCGGAGCTGCGCGGGC