Contig Data
morexGenes
Links



Map Locations of contig_38420 (7550 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38420

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53503 1 2187 bp MLOC_53503.1 Available Available None
MLOC_53505 1 1094 bp AK365271 Available Available None
MLOC_53504 1 324 bp AK365271 Not available Available None
MLOC_53502 1 837 bp AK365754 Available Available None
MLOC_53501 1 1989 bp None Available Available LOC_Os06g03770.1, FRAME:+1, EVALUE:2e-19, 13106.m00319 protein ABC transporter, ATP-binding protein, putative, expressed





CDS Structure of MLOC_53503






CDS Structure of MLOC_53505






CDS Structure of MLOC_53504






CDS Structure of MLOC_53502






CDS Structure of MLOC_53501






Contig Sequence (7550 bp)

>contig_38420 7550 assembly3_WGSMorex_rbca.fasta
GGAGTCGTCCAGATCAATGGTAGAGCTCTCACTCTCCCCATTGAACAATACTTATTAATA
CTATAATAAAATCAGTCTTGGACTAGGGAAGGAGATATTCACGATTACTGACGGTTTCAT
TATGGGCTATGAGTTACTAGGGATTTGCACATACACAACTAAAACTTCATCTATTTTTCA
CATCCTTTAATTAGCTAAACTCTGAGAAATAGTTATGGTAAGGTTCACCTTGTGGCTTTG
CTTCCCCTTTCCCCTCCTCTAGCTCTCCCGTGGGCGGCAGGAGGCAACCTGCCACCGCTG
GCCCCTGACCCTCCTCTTCCTCCTTTCCTCTCTCGGCCGTCACGGCGCACTGGTGGGCGC
AACCTGCCTGGTGTGGGCTGCGGCAGGGAGCTTTCTCTCTCTCACGTGGCAAGATCGAGG
CAGGTCGATCTGACCTCGCCGGTGCGCGACGCTGTGTGGGGCACGGCGGCGCTGGGGCGC
GACAAGCGGCGGTGGCATGGAGGGTTGCACGAGGGCGGATGCGTGCTTGTGATGGCTGTG
GTGGCGGGCGCCCGACTCATCGGATCTGTGCGACGCTCGTGGTGGTGGCGCCTCTGTTGG
TCCAATCCCGGCGGAGCGGTGGCTTTGGGTAGGTGAGGTTGGGCTCGGTCCGGGTCTTGC
TCGCGGGCAGTGAGGTTCCTCCCCTTGTGGGCACGGAGGACGGCGGTGGCGGTCATGACA
TCACTGTGTTGGTGGGCGGATCGATGTCGTAAGCCATGGACATGGCGTCGTGTGAGCTGG
GCTAGCTCATCGGGAGCCGTCTGAAAACACACAGGTACTGTCCTCCCACTTGGACTGGCT
GGGGACGCAGTCGCTCTCTACCATGGATGCACTGACCCAGACTCGGTGGCTGATGCCGGG
CTATGAGTGGATGGAGTGCCTCTGCTCTTCCTACTATGGTTGATACGCCGTGAAGTGGGC
GGCTGGCAGTCTCTCGGGCCTTGGATGGTGGTCTGCACAGGGGGCTTTCCGGCAGACACC
ATGTTGGCAGTGGTGGCTGTCTCTTGCTCGTGTGGGCGGTGAGGGTGTAGTGGAGGGTGC
CTGGGGCTCGCTCTCTGTCGTTCGCAATGGTGATGCTCACATCCGGATCTAGAGACTTGT
CATGACTGTCCAGGATGCCTCGTGGTGGCATGGGGAGCTGCTGAGCAAAAGCTCAGCCCT
TTAGCGCTGACTGCAGCGATGCTTGTGGGTGCCGTTCTCCTCTTGAGGATGTTGTCGTGG
TTCTCCTCTCCGTGCCAGGGTTCCGGGTGAAGACCCTCGTCCGTCTCGGACTCATCAGCG
GCGATGCTTTGCGCCGTCTCCTAAGGGCGTTCTTGTGGAGCTTAGGTGTACTTGGATGTG
TCATGGCGCTGTATTCAGGCCTGCCTATGTTATTTTTCGGCAGCGTAACCGCGTGCGTTT
AGGCTATCCGGCTATCTCAGGATCTGCTTTGTAAGAGGTCTTCCTCACTACCTTGTATTG
TTCGGTTGTGTACTTTCTTCTATGCTTTATCTATGAAGCGGGGTGAGAGCCTGTTTGAAG
CAAAATGTGTCCTAACTAACAAGCATTAAATTAAGATGTTTTATTAAGACAACCAAGGCT
TTAAACACAATATGTTAATATGACGCATGAGATAGTATAGGCTGTAATTCGAACAATCTT
ATTCTGTGCCATATTTATTTAATGGGTAGCTCAGAGATTTGATTTATACCAGGTATGTAC
CAGAAAGGAAAATTCTTAATGGGGCCACTTTCACTGTACCAGCAGGAAAGAGTGTGGCAA
TTGTTGGAACTAGTGGCAGCGGTAAAGCTAATCTTATTTACGTAACTAATGTTAGTTAGC
TTATGTTTGTGTTACCAAAATGTTTATGTTTGACTTCTGCATTTTATATGTGTCCAAATG
TTGTCTAATGGGTTTACAGTACATAGTGTTTAATCTTTGTTTTAATGTGAACCATAAAAG
AATTGTTACTTATGGGTGAGTGATTGTTCATTAACTAGTCCTATCTTCTACAGGAAAATC
AACCATACTTAGACTTCTCTTTAGATTTTTTGATACAACTTCAGGATCTGTAAGAACACA
CCCATCAATCTCCCTTTTGATTTCATGCTCATGAATTGATGCCCCTGAAGGCTTCTCAAT
TTGTCATGTACTTTAAAGTTTCTATTCTTGTGATACCTTTGTTCTCTCTTCCTGGCAGAT
ACGAATAGACGGCCAAGATATTCGGGGAGTCACACTGGAGAGTCTTCGGAAGTCTCTTGG
TGTTGTGCCACAGGATACGGTTAGCCACCTGATACTCTATTCTCTGTCAACTCTTTAATT
TATCCTACTTCTGTTGTCCTCTTATGGGATCTACTAACTTGTGCTGTAGTATCAAAATGC
ATTCCTATATGATTTACTTTTGGAAAGGAAAAAAATTGCATTTATTAAATTCTGTTGTAG
AAAGCCAAGCTTCCATGTAAAACCATCGTACAAAAGAATAGCTTTCGCATCACATGGGCT
TCTCCACCACATCTGCTTCTGTTGAAGCCATAACCCACACATAGGGATGTAGAGCGGCAC
CCGATCCGCCCCGCTTCCAAGTTAAAATATCTCAGGTTAGTTATAATTTTTTCACCAGAT
TTATCTTAGTTTGAACTAATATTATGTCATGCGGGCTTATGCGGGATGCCCACCTACACC
CGTACCCACAAACAGGGCCTAAGAACTTCTGCTAGCTATCATTGTCGTACATTTTCTCAT
TTTTTATTGGGAACCAAATATGAATCCTTTTTTATTGAAATACAAATTGAAGTATCACTA
CGTGTGGGATAAGGAATCTATTTAACACATGGGGAGGGCCAATGGACAATTGAGAACTGA
GCCATAGTCCAGTAGTAACTGGTAAGGACATGCTGGCGTGTTCTTGCCTACTAGGGTCCT
ACTCCTTTCAAGAGTGAATTCTGGTATCTCATGGTTATTTCGACCTAAATTAGGCTCATC
CCTTGTTGGACATCCACGGGGCTTCAGCATTGTTGGACTAGTTTAAAAGGTTCAAATATA
TAATTGAAAAGATATGGTGCTCCTGTATGCAAACTTTCTTCAGCGTCGTAAAATCTTGGA
ATAGATTGGATTTGTTTTTTCTTTAGTGAATCAGGTCAATTAATTTTTTCTCCAAACTTA
CACCATTAATACCATTACAGGTACTTTTCAATGACACGATTAAGCATAATATACAATATG
GGCTGTTATCAGCAAATGATGAAGAGGTAAAATGTTCTTTCAATCAATATGGGAGTGTTA
TAGCATGGTCAAATGTTTTTTGTGAAGCTAATGTATTCTTTTCCAATTTTCCATACAGGT
TTACGATGCTGCTCGACGTGCCTCTATCCATGATACAATTATGAACTTTCCTGAAAAGTA
TGACACGGTTGTGGGAGAGCGCGGATTGAAGGTAAGACAGGGCTCGTGTTGTGCAAAATC
AGGAAATGTTGTAACCTTTTGTTGTATGACAACAGCTCAGCATATCTCAACAACTGTGGT
TTGACTGTTTTGGCAGTTAAGTGGTGGTGAGAAACAACGACTCTCAATTGCTCGTGTATT
CTTGAAGGAGCCTCACATTCTGTGAGTTTCTCTCATACATTTTCTGTCGAATAGGAGACT
ATATCTGTCTAGGGGACTCGTCTATGCTTTCATTGTGTATATAAGTACGACCGAGTCTCC
TCTTTCTTGTCGCACAGAGGGCTGGCAGGGGAGCCCATATTCAGATACTTATTAAACAAT
TTTTTGAGTGCAAAAATGGGCCTAGGAATTTCCCTCACCGAATTAACTTTCTTACCTGAT
TCGTACCAGGTTATGTGATGAAGCTACAAGCGCACTGGATAGCACCACTGAATCATCGAT
TTTGAATTCTCTAATGTCTTTATCCATCGATCGAACCTCAATATTTATTGCTCATCGACT
CACAACTGCAATGCTATGCGACGAGGTATTTCACATTTCTGCACATACATAGACAGTACA
GCATACATATCTGTAAAAATAATTTGACTTGTTGCTATATTGACAATCAGTATCTGAATA
CCAAGCCAGGTTTACAGCCATAAAAGTTGCTATTGCAACTTGCTATGGGCTAAACTCCAT
TATACTTCAAATCCATCTATTGAAAATCATTCACTTCCATAATTCCCATGTAAGTAATCA
TTCATGTGATTTTCAGATCATTGTCTTCGAGAATGGAACAGTAGTGGAACAAGGACCACA
TGATCTCCTCCTGTCGAAGCACGGGCGGTATGCCGAACTTTGGTCCCAGCAGAATACCAC
TGAAGCCAGTTGATGCTTCTGCTTTTGGTACATAAGTCTGATAGACCCAATACGTTTTCC
CTTTGCATGGGAAAACAATGCATAGCCATGTTTCAATGGATGCAGGTTTTTATTTATCTG
CCTTGTAAATGTACTTCTTGAGATTTCAGATACAGGGGAAGTAGAAATTTACTGTTGAGG
GGGAAATTCTCCATTTTAGAGAACCGAGAGGCTAAATTTTCCTGTACAGACATCTAACAG
TACCGGCATATGTCCATATGTTGATGTAATAATTCTTGTACTACATGGAACAAGTAAATA
ATTCTTGTGCAGCATATAATGTAGGAACATACTAACATTCACATATTCAATTACTTCCAG
TTACATACCTGTCTGATCTACTGTGTGCCTCATCTTGGTTTTTTGCTGTCATATTTTGGG
TGACCCTGACTGCCTGCATGTCTCTCGGGTCAGTCATCGGGGACTGAAGAAATCATTCTG
GTCAAAGGACTTGCACCGTTCCACAAGCTTTGTCCTGCCGGTATGGCAATGCGGCGGCGG
CATGGTGATATATAGGTAAATGCAAGCAATCTATGCATCTTTGTTTTCCTGATTGTCTTA
AGCTGCATGAACATTGGTGCTTTGCGCAGCTAGCCAGCCACCATATATCTCTCAACACTG
AAACCACACCACACAATAGTCTGAACACTGAATCACCTGTTGATCTTTAGGTTGTGCATT
GCATTCGTAGGGTGCAGACATAAACATAAAAATGAGTATATAATAGCATCCTGCTTTCTC
TAGATTCCATCAATGCATATATTTGTTGGCTTTTCTAGCCAAGAAATTCATATGGACTAC
CATGTTGCACCCACTTGCCACACACAAATTTATGCTTTTATCGACCTATTTAAACTTGAA
AGACAGTTTCCAAAGATTAGCGGGTAAATGGTAGAAGGCTAACTGCTATTGAGATTGGTA
AATGTAGATTAAAATTTCTATAAACTTGGTCAAAGTTTACAATGTTTGACTTTGAAAACA
AAACTTATATGCACTATAGTTGTGCAAAGAATGACTATATACCCAGCTTAATTATTTGTT
ATTGGCGATCTGATCACTTCAGTACATCTTTGAGCAGACTCTCAAGGTTGGCCAACGACC
GGCCACCAGGCTGCGCGGTCGAGCGAGAAGCGACCTCCTTCCACTCTGCCGCCCTCCTCC
GCATCTCCCTTCCTACTTCTCCCCCTCCCATCACCTCCCTTATCCTCGCCTCGACCACCA
CCCGACGCACATCATCGCCGACCTCCATCCCAACGCCCCACTCCACACACGCATAGCGGC
TGTTTGTCTGCTGCTCGGCGAAGAAGGGCCAGCAGAGCATCGGCACGCCGGCGCCGAGCC
CCTCCATCATGGAGTTCCACCCGCAGTGCGTCAAGAAGGCGCCCACCGCCTCGTGACGCA
TGACCGCCTCCTGCTCGCACCAGCTTGCCAGGAGGCATCTGCCCTTGGTGGCCTCGATGA
ACTCGGGAGGCAGCACGGCGGCATCGCCCTTCACCAGGTCGTTCCTCACGATCCAGAGGA
AGTCGTAGCCGCAGTTGGCCAGTCCCCACGCGAACTCCACCAGCTCCTGCTTCGACATGG
TGGTCACGCTCCCGTAGTTGACGTACACCACGGACCGCGGCTCCCTGCCCTGGAGCCACT
CGAGACATGACTGATCTTCTCTCCAGAGGCTGGAGCGCATCGCCGCGAGCTCGCTTCCGC
CGCCATCGCCTTCTGAGACCAGCTGCTGGGTGAGGAAGTTAAGCGGGCCGATGGTGTAGA
CGGGCACGGGGAGGATGGCGCGCATGGCGTCGAGCGCCGTCTGCTCGAGCTCGTCAATGG
TGTTGATGACGATGGCGGTCGCGCGATCCGACTGCTCGACCTCGTGCAGCAGGAAGTTGA
AGAGGATGTCGCTGCGGTCCGTGGTGCGGACGAAGGAGGAGAAGTCTCGGAGGCGCATGT
GCTTGCTCATCCCACGTGCCTGCGTCACCGGCGTGTCCAGGTACCCGTTCTTCACTTGCT
CTTCGTCTGCACACATCAATCAACACAAGTTATACGGATCCCAAGGACATGGTTGATACG
TATTGCAAACATGGCATGCATATACCTTTGAGAGGGGTGAGGCCCTCGTCTAGGAGGAAC
CGGAAGTTGCGGTAGCCCATGAAGCCGCAGGCGCTGGCAGTCCAGAACAGCGCGCACGGC
ACGCCGAGCTCCGCGGCCGCGTCCACGCAGAAGCTCATGACGCCGTCACCCACGACGCAG
CTGACCGACGGCGCCCCAACGGCGGCGTTGAGGTCGCGGAGCAGGTTCTTCAAATGGGGG
AGGCAGGTGGTCATGGTGTAGTAGCAAAGGGACGGCGGGTCCTGCGTGGCGTCAGCGTCG
GCGTCTGCTTTGGACGTGGGCAGGCCGTCTGGGATGGTGGCGAAGCGGAAGTCCGGGAGG
CCGGCCACGGCGTCGGGGCCGCGGGAGCGGACAAGGCGGCGCTGGTTGTACTCGGTGTTG
ACAAAGGTGACATGGAAGCCCTTGCGGTGGAGGACCTTGGCTAGCTTCATCATCGGCGTG
ACGTGCCCCTGCGCCGGGAACGGCACGAAGACGGCGTGCGGCTTGTCGTTGGTGGCCATT
GTCGCCGCCTGAAATTGTGCCTTCAGTGGCAATGGCACAGCGCATGTATATATATATCTC
GAGCAGATGAGAGTCACAGTGTCCAACTTGGCCTGAAATTGTGCGTTTTGGACTGACAGT
CGCCACCAAACGCGACTCGCAAGCAAGTCACTTCGTACTGATGCTGACGCTTGTGTACAC
GCGCAGCTGTGAATTTTCTGAAACAAACATGTGTACGTACGTAGTAGCTTCACTCTAGAA
GACTAGTCGCAACTGACTTGAATTCTAACACCACTCATGGTGCGTGATAGCGGATAAGCA
CGTGCATTTTTTTACCTCCTACGCAACTACTAGCTTCCTAGTAGCTTCACTTGGTCTATG
TTTTGAGGGTTTTATTTTTGACGGGAAGCTTCACTTTGTCTTTTGCAGGGAAGGGGAAGC
TTCATTTTCTTTCAATATGTCTTCCCATGTCCGGCAGTAAGCTTACCAGACTATCGTAAG
CCCCGGAGCTAAATGGGCAGTGCTAGGCGCCCGCGCGTCGGCCCGAGGGCTCGCGCCGGT
CGCGCAGCAGCCGTCAGATCAGGGCCCCCTGGCCGTCAGATCTGGTCGCG