Contig Data
morexGenes
Links



Map Locations of contig_38413 (3415 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38413

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53495 2 857 bp MLOC_53495.1 Available Available LOC_Os03g02850.1, FRAME:-2, EVALUE:4e-11, 13103.m00264 protein tobamovirus multiplication protein, putative, expressed





CDS Structure of MLOC_53495






Contig Sequence (3415 bp)

>contig_38413 3415 assembly3_WGSMorex_rbca.fasta
CCGCGGCCGGAGTGGCCCGCGGCGCGAGGGAGGGAGGAGCTAGCTAGCTATCGAGAGAGG
GAAGTGTAGATCAAGGCCCAGTTAGGACCAGCTTCATGTTGGTCAAGTTATTTCTGACAG
TAACGATGATCCAGTGTTCTAGGTGGATGCAAAAATTCAGTTTTTTGTGTTTTACTATTT
TTTATTTCTTTTAAAAAATGCTCTGTTCACCTTGGATGAACAGTGCTATCGTCATTATCG
GATAAACAGCTCTGTCGTCTCTGGACGTGACGGCAGGTGTCACGTATCGGCTGACGCGCC
TGCCGCCACGGCCCATAGGATCTTTTATGTCAATTTTATCTTACGAGTGTCTTTTCTAGC
AATTCGATTGAGCAGGCGGTCTTTGACAAAAATTCCAGACGCGGCAATCCGTCCATCCAT
TGTCATGGCCCAAAGAGGAAGGGCTCGTGCTGGGTGAAACGCGAACTACAATGGACTTAA
GGCGATGCTGCCCAAAAAGGGGATCCCGTGCTGTGTCCGGAGCGGAGAAGGCAGCCGCAA
CGTAGGAGCACTCTCCCAAATTTCACGGCGGGGAGCCGGAGATAGCCGTTGACGAGCCGG
GAGGGCGCAGAGAGTTTGGCACCTTCGACGGGATGAAACGACTGGAGGCTCACCGGCATA
CGTGACCAGCTGCGCCTGCGCGACCGTAAGCTCTTCTGCACGGCAAGCATGATACATCAT
CAATCTGCAGTCATGACTTTTTTGTTTCCTTAACTGGCAGCTTTGCGGGCAGAACATGTG
TGCATTGTGTATATGAGCGATTTTGATTGTACTATGCTAAAAAGAAAAGCTCTGCAAGGG
TGGCTTTTAAATAATAATAAAAACTTCTGTCAAATGGAATCAGAACAGTTCTCCTGCCGT
CGGAGAAAACGGACACAGCATCCACTGATTGCTGAAATACGAACTCACTCGTATAGGTGA
AACGGCAAGGTGGGTCAAAAATCAAATATGCGATTCCAGCCGTGATTGCTGTGGCGCAGT
GCAGACTACAGAATGGAAGTACTGAGAAGAACAAAGGTATACATATATAACTTACATTTT
TCTAGACCTGTAAACAGCACGACATTGCAAATCTCTCTTTTTCTTTTTGACACTACATTG
CAAATCTCTTTTACAAGCAATAGTAACCTGAAATCCTAAAGGCTTCCTCGTTTAAAACCT
GGGCAAGCTTCAGTGCAAGTGCGGTGATCTTCACATTGCCTTTCCTGTATTTACCAACTC
TGTAAGGAACAGTCGTCTGTACCACAGCCAGGGCTGCTCTGCGCTAATGGATAGGATGGT
ACTGCGTGATCCCACGCTTTGGGGGCAGTTTCCTTAAGATAAACAGAACCATAGCTGAAG
GTATGATCTCGACCAGCTGCAAAACAATTTGGTGAATCCAGTCAGCAACCACAAAGTGAT
TCAGTTACTCTCAAGGAACAGCTACAAAGCATACCTGAAGCACTGCAAGAAGATTTAACT
ATATATTCTTTATTTCAATTCAAAGTAAAAGTCGATGCCCCTGATTATCGCTTTTAACTG
GGTTGCTCTCTCTACAAGCGCCCTGCACCTGGGACCTGGATCTCAAAGAGAGTTATCAAG
GAAGGGTTTTGGGGAGGAAGGAGATGATGCAAACAGTATGTGGATGAAGATGGCAACCTC
TTCGTACAGTGGCTTCAGAGGAGTTTGGGGTGATGGGTGACCGGAAGGCTATTAAGCAAA
AGAAACGCCTACTACATGAATAGGAGTGCAGACAACATAGAGAAGTACAAGGTGGCAAAG
AAGCCCACAAAGCGAGCTGTGAGTGGAGCAAGGGGTCAGGCGTATGAGGGTGCCTCCAAC
ATTTAAACACAAAGGAAGGCGAAAGGGACATCTATAACATGGCCGAGATCCCACGAAGGA
AGAGGAGGGATGTCAACCAAATCAAATGCATAAAGGACAGAGTAGATCAACTTCTGGTGA
AGGACGGCTAGATGAAGCATAGATGGCGAGAGTGCTTCAATGTTGGAGAGCATGAAAGCT
CTACCATTGAGTTGGACGACCAACAAGCATTTTGTGAAACGAATCCAGGAGTATGAGGCC
AGGGAGGCTCTAAAAAGGATGGAAGAAGGCAAGGAGATGGGCCCTGATTGTATCCCCATT
GAGGTGTGGAGAGGCCTCGGAGACATAACGATAGGATGGCTAACTAAGCTTTTCAACCTC
ATTTTCTGGGCAAACAAGATGCCCGAAGAATGGAGGCAGGGTATATTAGTACCGATCTTC
AAGAAAAAGGGGATGTCCAAAGTTGTACTAGTTGCCGTGGAATTAAGCTGGTGAGCCTTT
CAATGAAGCTATGGGAGAGTCATTAAACACTGCTTAAGAAGAATGTCGAGCATGACCAAA
AATCAGTTTGGTTTCATGCCTTGGAGATCGATCATATTTTCTTGGTAGGACAAATTATGG
AGATATACGGAGCAGAAGGACCTGCATATGGTGTTCATTGACTTGGAGAAGGCCTACTAT
AAGGTACCGCGGAATGTCATGTGGTGGGCCTTTGGAGAAACATGAACTCCCAACAAAGTA
CATGTGTTCGAATAAGTGATGGCGACACTGATGACTTTCTGGTTAAAATAGGACTGCACC
GAGGGTCAGCTTTGAGCCCTCATCTTTTTGCTTTGGTGATGGATGAGGTCACAAGCAATA
TACAAGGAGATATCCCATGGTCTATGCTCTTTGCCGATGATGTGGTGCTAGTCGACGATA
GTCAGACGTGGGTTAATATAAAGTTAGCGTTGTGGAGACAGATTTTAGAACCGAAAGGTT
TTAGGCTTAGTGAAACAAAAACTGAGTACATGAGGTGTGATTTCAGTACTACTAGGCACG
AGGAGGAGGTTATCCTTGGCCGGCAAGTGATACCTCAAAAGCACACCTTTCGATATTTTG
GATCAATGTTGCAGAAGGATGGTGATATCAATGAAGATGTGAGCCATCAAATCAAAGCTA
CATGGATGAAGTTGCGCAAACTACTCTGTGACAAGTGAGTGCCACAAAAGCTAAAGGTAG
GCTCATACGACAACGATTCGACCTGCGATGTTGTATGCCGCTAAATGTTGGCTAACTAAA
AGACCACATGTCCAACAGTTAGTGTAGCAGAGATGGACATGTTAAGATGGATATGTGGCC
ACACAAGAAAGGATCAGGTCCTGAATGAGGATATACATGATAAAGTTAGGAGCGTCGACT
GAAGAGAAGCTTGTCCAACATCGTCTGAGATGGTTTGGGCATATACAACGCAGGCCTCTA
GAAGCGCCCATTCATAGTGAACGTGTTAGTACGTGATAGGCCTGGGCCCGTTAGTCTTAG
GGTTTGCTTAGGGGTCAAGTAAGCCTTACTTGGGAGTCAAGTAAACCTCTCTATA