morexGenes - Barley RNA-seq Database

Contig contig_383715

Source Contig contig_383715

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_383715 (558 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_383715

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53439	1	182 bp	MLOC_53439.1	Available	Available	LOC_Os07g47820.2, FRAME:-3, EVALUE:9e-17, 13107.m05108 protein acyl-CoA dehydrogenase family member 10, putative, expressed
MLOC_53438	1	112 bp	None	Available	Available	None

CDS Structure of MLOC_53439

CDS Structure of MLOC_53438

Contig Sequence (558 bp)

>contig_383715 558 assembly3_WGSMorex_rbca.fasta
CATCCCAGATCGAACCCAAGCTTTCGGAGATGATTAAGTTTCAGCCAAGCCGGGGAGTGG
GAACCGAGGTGGGCAGCGAGGGCGGAGGAGGAGGATCTAGGGCGGACCTGGAACTCGCGC
TCGACGACGTGGGCGGACTGGAGGATGGCGCCGGCGGGCTTCTTCCGCAGCACGTAGCGC
CGGGGCTCCCTACCGGGCGCGGAGGCCTCGAGGCAGTAGGTGGGGTTGGACTGGTCGTGG
CCGAACTGCTGAGGGCGAGCGACAGCGCCGGTGCAGGGAAGCCCGGGACGTAAGCGGCTG
CGTACCACAGCACCGTCGCCTCGTCCAGCGCGTGCGCCTCGTGCACCAGCCGCAGCAGGT
CCGAGGTCAGCGTCGCCATCTCGCTCGCTCGCTCGCCAGCCGCCGGTCCGGGATTGGATT
GCCGATCGCGGGCGGAGGACGGGGAGGGGACAGGGGACGACGACGGTGGAACAGTCCGGG
ATTGGATTGCCGATTGCGTGGCTGTTGGAAAGGTACTACTGCATAATTTGAACATACAAA
ATCAAAGCTTGAATGTGA