Contig Data
morexGenes
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Map Locations of contig_38370 (6854 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38370

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53436 4 3046 bp MLOC_53436.3 Available Available LOC_Os04g45910.1, FRAME:+1, EVALUE:0.0, 13104.m04606 protein placental protein 11 precursor, putative, expressed
MLOC_53437 1 1335 bp AK366590 Available Available None





CDS Structure of MLOC_53436






CDS Structure of MLOC_53437






Contig Sequence (6854 bp)

>contig_38370 6854 assembly3_WGSMorex_rbca.fasta
AGCATGGGACCATAAAAAATTATAGATATGTTGGAGACGTATCAGCAGTCCTAGCTCTGA
ATATGGTCGTGGAATTGTGGTGTCGCCTCGCCCGGTGGCTCGGCGGACCCCGACTGATGC
TTGCTATGGTGGAAGGGGGTACAATGGCGGTGGTGGAGTTGCTGCTACCGGATCTAGCGG
GCGGCACCCCGAGCTTTCTGGCTACGACCCTTCCAAACAAGGCGTGCAAGTTCGGTCCTT
CTGACCCGATCTCCTCTTCGGATGCTATTGGGGATCCCTTCTCCCCTCTCCTTTTGCATG
GTGCTGCCTCTCAATCCTCAGGTCCTATCTCGACTCTTACTTGCTCCGCCTGTCACTGCT
CTGGGTTTTTAAATCTAAGTGTGAATCCCCTCTTCTGTCTCATTTGCTGCGCTGAAGGCC
ACCTCACTATTGACTGCAAAGATCGATGCAAGCCACCGTCTTTCAAATTTGTGCCTTCAC
GTGAAGCAAATATGTGCTTATCGAGGAATCATAATTCTTCTTCCTTTTTGCTTCTTGGGG
AAGCAAATATATGCTTGCATGAAAAAAACTTCTCGCGGAAGCAAATCTATGCTTCGTGTG
AAAGCACATATTTTCCCTTTTTGGGAAGCACAAATGTGATTTATAGTTGTGCTTCTCACG
GAATCAAATATGTGCCTCTTCAAGAAGTAAATGTGTACATCTCGTGCTTCTCGTCAATTT
AAATTTGCGCCTTCACGAAAAACAAACATGTGCTTCTTGTGAAAGCGTCCAACACATAAC
ATGTGACGACAACTCGACACGTCATTTTCATGTTCCCTGGCCACTAATAGTGACTCCTGA
AAGTCCACATAAAGGGTAACATTTAGTTAGTTTCTCTAATATTTTAGTCTATCCTCATTT
CATAGAAGAGAGAAGAAAACATAGCCAACTCTAATCCGGTCTAACGCGGACCTTTTATTT
CGCGTGTGGGGCGACGCAAACCGCGCACCCCCTCCTCCGCACACACACTTTTGGGCCTGC
CTCTGTATACCTTTTTTGTTTTTTGTAACAAATGAAAAATCTGGGTTTTTTTTCTATTGC
ATCAACAGAAAAAAAAAACAGATAAAAAACAAAAAAATGAGCAGCAAGTTAATGGGCTGG
CCCATACGACGGGCGCCTGCGGCGCTGCATAAGAGCTCTGGATGTGTAATATGCTGTACT
GAATATCGAAAAAAAGAAAAGTCATGGCCACGGCACCCGACGAGCATGGGCGCGCGCCCG
ACGTTCGCGCCTTCCCTCTTGCTACCTCAAACCGGAATCACCCGGTGCATCCACCGCCCA
CCGATCGATGGGTGACGCCCCCTCCCTCCCTCCCATGGAAATTCCGGGGACCAATCATAT
CGCCCGTTCCCATCGTTCCTCGGTTCAAATCTATAGCGCCGAAGGATGGCGAACCAGGGT
GAGAGATCGGGCGCCATGGACGGTCTCGTAAATGGCTTGTCTGGCGCCTCGCACGGACAC
GGCGGGGCTGGGGACGCCGCGCCTAGGGCGGTCAACCGTGCCGGTGCCGCTCCAGGGGAA
GGGGGCCGGCAGGAGATAGCCCGGCCGACGTGGGCCGAGGTGCTCGCGTGCTGTTCGATA
TAATGATTATGTAGGCTGTAGGGAAAGACAGTTCGGCTGGGGCTCGTCGGACTATGCTCT
TATTCAATTGTTGCAGGTAGTATCCGAGGAGAAGCAAGAGGAGAGGCCGGAGAGGGCAGA
AGATGGTAGGAGGCAGCACGGGCATTGCCCGCCCACGTCCACTCAACGGCGCAATCTGGT
TAGAGTGCTTTTGCTTTGGCATTTGAGTATTTAGAGGCTAGGAGCCCATCCGATTCCATT
GTGATGTGTTTGTCATCTTTAGGGTGAGACGGGTGAAACAAAGGGCGGAGGCTGGCAGGA
CCGCAGGCCGCATCAGCAGACCTTGAAATGTAAAAGATCACAACAGGTATCCAATTAATT
ATGTGTACTGTATGAGGATTATATGCCTGTTTTACTCTCTTATTGACTGGTTTCTACTCC
CTCCGTTCCTAAATANNNNTCTTTTAAGACATTTCACTAGGGGTCTACATACGGAGCAAA
ATGAATGAATATACACTATAAAGTATGTCTAGATACATCCGTATGTGGTCCACTGGTGAA
ACCTCTATAAAGACTTATATTTAGGAACGGAGGGAGTAGCGAGTAGATTATTCGACATAC
ATTTGTTACTATCTTATTCTGCTGATATAAATAAATTTAGTCATTACTGAAAGGAAATGG
GTTGGTTTTCCATCATTAATTTCCCCTTGCTGCAGATCCTTATTGGTTATAATGTTCAAT
TGTCAATATTTTTATGTTAGAAGCTCAAGTTGGACCGATCTCAGACATGCTTTGAAGCCT
TCTTTACCTTCTGAAAAAACACATCACACATAGTATTTGGAAAGAATGATATCAAAGGCA
CCTCAAAATAGGCACAAAAAGTAAAAATAATAATAATATCAAGGCGCCTAGGCATTGCCT
TAGCTAACATATTCGTCTGAAGAAAGGGCTGACAACAGCACAGTTAGAGGAAAGGGAATG
AAGGGAAACAAAAAAAAAGGATGTAGAGGGGAAAGGGAAAAGGCAAAGTGGCCTGGCTCC
CGCCTATCAAAACAATAAAAAATATTGGTTTTTGTTGCTGTTTTTTTCTCTTCTTTTTCA
GTCTGGTTGGCGCCACCCTTGGCGGCTGTGTAGCTTAGTTCCATTTTGGCAGCCTTTCTT
CTGATACAAATGACGTGTGTTTGAGAAAATGTTGTGTACTGTTTGAAAAATCTGATTGGA
AGGAATGCCAGTCGTAGCTGTATCGGTAATTTATAAGCTTCTGTTTCATGGATTCTGAAC
TTCTATTGACTGTATGAAGAACTCCGAGGAATGGAACCGATACAAAAGACCACCTTCTGA
ACAAGAATACTCGGAGGATGTCAGTCAGCTTCGCCATGGTCTAAATGTAAAGCCTACCAG
GGAGGAGCTCAATCATTTGTCAAAGGCATGCTGTCGGCTATGGGAGCTTGACCTGAACCG
TCTCCTCCCTGGTAAAGACTATAGAATCGAATGTGGCCAGGGGAAGAAGGTTTATCAGAA
GGGTGACATGGCATCTGAAAACTTATTCAGCTGGCTGAAGGATGACATACTGCATAGGCC
TACATACTCCCGCTTTTGTGCACTTCTTGACAACTACAACCCACGCCAAGGATACAAGGA
ATTAGTCACCCAGCAGGACAAGAATGAAGAAGCTGCTTTTATTGAGGAGATTGCTAGAAG
TGCACCAATCAAATACTTACACCAGTATCTGGTGCTGAAGGGAATCACGTCTCAGGACCA
GAAGGACTTCAAGAAAATGCTGGCATCCCTGTGGTTTGATTTGTATGGAAGGGGTGGATG
CTCTGGTAGCTCTTCTGCCTTTGAGCATGTCTTTGTAGGAGAGATCAAGGGGCGGTGTCG
AGGCGAGAATGAGGTTACAGGCTTCCACAACTGGATTCAGGCAGGTTATTTGTATTGTTT
CAGCAGCATAGTTCCATTATCTGAAAGAAATGTTATCATGGTGTTGTGTGACTAATGTGC
AGTTTTATCTGGAAGAATCCAAAGGTAATGTGGATTACCAAGGGTACATATTTCCAAGGA
CATGCGGAGACCTGGTGAGTTTATGATCTGAACATACATGGCATTTGTTTAGATGATAGC
TTGTATGGGTCTTAAAAGATCATATGCTGAATTGCTGATCTGCAGCCAGACTCTGAGATG
CAGCTGCTCACCATTCAGTTTGAGTGGCATGGCTTGCTGAAATCTGTGTCCAGCACATTG
GTCGGTGTCAGTCCTGAGTTTGAGATTGCACTCTACACGCTCTGCTTCTTTGCTGGAGAG
GAAAATAACCATGTCCATGTTGGTCCATATGCGCTGAACATCAAGTGCTACAGGATGGGG
GTTAACAAGATTGGATCAGCTTTCCCAGTTGCAGAACAATGATGGTTTTGGTGGCCACAT
GCTGAAGGTCAGCAGTCTTCTGTTTCTATATTGCTGATCATTTTGTTAAGCTACTGATAT
ACATATTCAAACTCATTTGCATTAACTAAAAACGTTGTGCTGTTTAATAATTTGCTGCCA
TGTTACAATATGCACTAGATGATGTTGCTCTGATCAAGCAAATGTTTTGTGTACCTGTAA
TACTTAGTATCTGTTTCTTTCTTCTTCTAGCAGACAAAATAAAGTTATGCCAGATGGTAA
TTAAGAAATATTGTTTTACATGTCAAAGAGTACGTACTTACTTTGGCATAAGAGTTCGAA
ATAATATCACATAAGTTTTTGTTTTATGCTAATAAGAATGGGAAGGATGAAATGAACTTG
TACAAAGTAGGAACTCAAGGTGCTTGTTCGCTAATCTTTAGGTTAATTTACTTGCTAAAA
GTGAAGAATTGACATCTTGGGGAGATGGTAAGCCAGCGCGTCCACCAAGTGCAATATGGA
CCATTAGCCTAGGCCATGGCCCTTCTTGATCTGCGGTCGACCCGTCCACAAATCCGTATG
TTAAAGGAGGAGGTATACAAATAATATCTCTTTCACATCTTGACATGTTGAAAATCAGCA
GTCAATAACATAACAGCAAAGTGCCATTTACCGTTATCAGACCTCAAATATCTGGCTAGC
AACTGCAGAAACAAGACGCCGGCATTTTCAATGTCTACTCTACAAGGTTGGATACACGGT
TAAACATAGAAAATAGACTTACATTTCATACCTGCATTGGTACTATAGACAACCCTTCAC
ATCAGAAACTCCCAAGTTCCAAATATGCAACTCAACCTAAAGAACTACGTATGAAGAGTA
GTAAACAAAACATTAGATCTTCTAAAGCTTGTACACTGATGAGGAGGAAAATCACCATTA
ATGGAATTTTTTCCATAGACGCATTACAATGTACACGGAGTCTAAGACATTAATTGTTAC
AGAAGATCATGTTGGAGTTGGAGCAGCGGCAGCCTTCATGAACATGAATCTCCTCCTTGC
GATGCTGTTTCCATTTTCACCTAGAGCAGCAAGGTGAAGCATCCGCCGCCTTGCTGAAGC
CACGGCAATATCGTCTGCTGTTGGCTTACCCTGGACATCATGAGGTGGCGAGTTGTCCCT
TGATGTGAGACTTTCGCCATCCAACTGCTTGAGCTGCATCACTTGCTTTAGGCTGTCAGC
TACCTGTCTCATGGTTGGACGGTCCCTTGAGCGCTTTGCAAGGCAGGTGTTGGCCAACTT
AGCAATTTCTCTAGTTCCCTGCCTAGAGTAACGGCCTTCGAGTCTTGTATCTATAATCTT
GCTGAACTGCTTACTTCCGACAGGATACTGCTTCACCCATTCCAGCAATTTCTGCTCATT
CTTGGGGCGGTTCTTTTCCATAGAACGTCGTCCGGTGAGGATCTCATAGAGTACTACTCC
AAAGCTCCAAACATCACTCTTGGTGGTGAGATGGCCTGTCGCAACGTAGTCTGGAGCCGC
ATAACCGTAAGTCCCCATAACCTGATTATGATAGAGCAAATTGTTCTCATAAGGAAATAT
TCATGCAGCATGAGCAAACTCCATTATCTTGCTCTGAAGTAAAACTAAGACATACCGCTG
TAGACACATGAGTTTGATCTGCTGATGGCCCTTCCCTTGCTAATCCAAAGTCTGAAAGTT
TCGGTCTAAACTCCTCATCCAGCAGAACGTTGGAAGCTTTGAAATCACGATATATGATCT
AAAAAATTCCATGAAATGATCATAAAAAAGATGTCATTTCTATGTTATTTTCCTAAGTAA
AATCAAAACCTTGAAGGTTGGAGATAAGACTTGTTTTATAATCCTTCCCTTAACAAACAG
GAAATAATATTCATGACATCCATTTTCTCTCAACTATTAGTTCAATTAGTATGATCACTG
CACAACATTATTTCATCCAGAAATTAATGCTTTAGCACAAACGTTTTAACTTGCATAAGT
AGTTGAAGCAACATGGAATAAGTACTGTATCCATCCAAGTTATGATCAGATCGATTGGAT
TCATCAATACAATGAATTAACTACTACTCCATCCGTCCCAAAATAAGTGTCTTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGAGACAGTTATTTTGAGACGGAAGGAAT
ATCAAGGTATCTTGATATCCACAGCTATTCTGACTTGCAAAAATTCCATTATTTACCAAT
AGGATGTGGTACTACACGAATTTATGCATTTTCACTCCCTATTATTTGCAAATCAGGTAT
GGTTCAAGTTCCAAACTAAGTTGTAAACAGTCATACATCGTTGGACTCATTCTTGATGCA
GTATTCTCACACTGAAAGGATGTTGCGATAAGTTGGCAAGCTGTACCTGAACCTCCAGGC
CTTCATGGAGATACATCAAACCCTGAGCAGCACCAAATACTATTTCCAACCTGACTCCCC
ATGGAAGAACAGGGTATGCTCGATTGAATAGATGATCATCCAGGGTTTTGTTGGTGATGA
ACTCATAGACAAGCAGCCTCTGAGGACCTCGTTCGTTACGGGCAGCACAGTAACCGATGA
GCTTGACGAGGTTCGGGTGCTCGACAACCCCTAGAAAATGAACTTCTGCCAGCCATTGCT
TATGACCCTGGTCAAGGTTGGTAGTGAGACAAAATGAAGTCAAATACAAGTACTGAACGA
ATCCTTGGCTCCTAGTAGCAAACAGCCAGACAATATAATGATACTACTACAATGCAACAA
CATTACTGAAAGTTGTTAGATTGATCTCTTCCCCAATGGGCCTTTGAAACCTTGACTCAC
GTCCTGATCGGGGG