morexGenes - Barley RNA-seq Database

Contig contig_38354
Source Contig contig_38354
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38354 (8955 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_38354

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53422	1	746 bp	MLOC_53422.1	Available	Available	LOC_Os10g36170.1, FRAME:+1, EVALUE:3e-23, 13110.m03268 protein LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_53420	2	684 bp	MLOC_53420.2	Available	Available	LOC_Os07g35940.1, FRAME:+3, EVALUE:2e-37, 13107.m03680 protein beta-amylase, putative
MLOC_53421	1	684 bp	AK375028	Available	Available	None
CDS Structure of MLOC_53422

CDS Structure of MLOC_53420

CDS Structure of MLOC_53421

Contig Sequence (8955 bp)

>contig_38354 8955 assembly3_WGSMorex_rbca.fasta
GGGGGGGATGCACCTGAATCCGATTTCAGGAAGTTTGGCACTACTTTTGCCTTCCGGGAG
ACCATGTATGCTATTGTTTGAGCAAAGTATCATAGCAAATACAAGACCATCTTAAAATAC
ATGACATGAAATAGTTAAAACAAATGCACGATAATATATACCATTACCATTACAGAAAAA
ATGGCTCTACTCGTACTTAACTGTTTGAACTAATAGTACAAATAAAAATAAAATTGCAGT
GCTATGATAAATACCTACAAGCAGACTTCAAAGCAGCAGCAGCGGCGGTTGGCCATCCTG
AGTGGGAATTTCCTAACGATGTCGGGCAGTACAATGACACTCCCGAGAGAACTCAATTCT
TCAGAGACAACGGGACATACCTAAGTGAGAAGGGGAGGTTTTTCCTTGCATGGTACTCCA
ACAATCTGATCAAGCACGGTGACAGGATCTTGGATGAAGCAAACAAGGTCTTCTTGGGAT
ACAAGGTGCAACTGGCAATCAAGGTATAAACACTTCCATGCATCCTAAAGATCTCGGCTT
ATTACTACAGTAGTAGATAGGATTTGAGAAACCATGGTTCAGTTGAGAAGTTGTGTATGA
TAAACAACAACAAAAATACACAAACTATCCAGGCTAAGGGAACTCGCATTGCTTAATAGC
TAGAATGTAAATGAGACATGGCCGGCCAAATAATGTTTGGTTGCAGATCTCTGGCATTCA
CTGGTGGTACAAGGTTCCAAGCCATGCAGCCGAGCTCACAGCTGGGTACTACAACTTACA
TGATAGAGACGGCTACAGAACCATAGCACGCATGCTCAAAAGGCACCGTGCTAGCATTAA
CTTCACTTGCGCGGAGATGAGGGATTCGGAGCAAAGCTCGCAGGCGATGAGCGCACCAGA
AGAACTAGTCCAACAGGTAGGTAATAACTTATGCGTTCAGATATATTACGCTTATATATC
TACGTATATACTATGATGGAAACACCTTTTTTTTTTAGAAAAGGAGGCTTAGCTCCGGCC
TCTGCATCGAAAGATGCATACGGGCCATGATGATGAAAACACCTAAATCACTTGTCGTCA
AAATAATTTCTCAGGTGTTGAGTGCTGGATGGAGAGAGGGCCTAAATGTGGCATGCGAAA
ACGCGCTTCCACGATATGATCCAACTGCTTACAACACCATACTCAGGAATGCGAGGCCTC
ATGGAATCAACCAGAGCGGCCCTCCTGAGCACAAGCTGTTTGGATTCACCTACCTTCGGC
TGTCGAATCAGCTGGTGGAGGGACAAAACTATGCCAATTTCAAGACCTTTGTCGACAGAA
TGCATGCCAACCTGGTTAGTGCCACAACCACTTACTAACGCATGTCAAAAATTAAACATA
TACAAGAACCATTTGTTGATTTGCAGGTGCCTATTATATACTAATAATTTAATTTTATTG
TTTTCAGCCTCGTGACCCATATGTTGATCCAATGGCGCCTTTGCCAAGATCAGGGCCAGA
AATATCGATTGAGATGATCCTACAAGCAGCACAGCCAAAACTGCAGCCATTCCCCTTCCA
GGAGCACACCGACCTGCCAGTAGGCCCTACTGGTGGCATGGGTGGGCAGGCTGAAGGCCC
CACCTGTGGCATGGGTGGGCAAGTTAAAGGCCCTACTGGTGGCATGGGTGGGCAGGCTGA
AGACCCTACTAGTGGCATGGGTGGGGAGCTCCCTGCCACCATGTAATGGAACCTTTATGA
TTTACTACCCTTTATGTTGTGTGTGAGTGTGACAGAGAAACCTTTCTCTGCCTTATTAAT
AATAAATAAAGCACATCACTTGTGTGTGTTCTGAAAAAAAGATCTCGATGTGTAGTCTAC
GAGAAGGGTTAACCGTCTCTTCGTGAGAATAACCGTGGCCTAAAAATAAGCCGATGAGGA
TAAATAAAATGTGGTGGTACAGTACTTCAAGAGGTTTACTCATCAAGAGGATGCTTTTCC
GATGAGCTCTAGTAGTACATCGGACCTCACATACCTCCATTGTGGTGAAATATTTTGTGC
TCATTTAGTGATGGGTAAATTTTGTTTATGTCACTCTAGGTTTTGACATTTCAGTTTTGC
CACTCTTAGGTTTTGACAAATAATTTCCATTCCGCGGCAAAAGCAAAACAATTTTATTTT
ACTTTTACCACTCTTAGCTTTCACAATGTATCACAAATGCCACTCTAGAAATTCTGTTTA
TGCCACAGAATGTGAAAAAAAACACTCACTTATTTGAAGCCAAGGTGTTCATGGCATGGA
AATGTGACATAAAGTAACGTTCGTGTATAAGAAAAAATTGTACTCCTCGTAACAAGAGAC
GGAAACATCATGAGACAATCGCGTTTGGAAGGCTTTGCATCACCTTTGGATGATGCGCAT
GAATGGAGTCGTCTGCTTGCTAGCCTTCGCCTACCGCCCACTGAGTCCGGGCGGCAACTA
CCATCGGCGAACCACCCAGATGACCTCTACCGATCGACCGGACATGAATGCGCTACCTTC
GTCGGCGACGATGGCCGCGTACGCTGGCGACGTGCCCCCGCATGCATGGCGGCACATGGC
GAGCTAGGAACCTAGGACCGTGCGTGGCCGCCGGCTATAAATATCCCATGGTCGTGAGAC
CACTAGAAGGAAGCAGCACCTGGCACTGCGAGAGCGAGCGTGCAGTGAGTAGATAGACTA
GACCAACGACGACGGCAGGCATGGCGATGGCGATGGCGATGGCGATGAGGAAGGAGGCAG
CGGTGGCCGTGATGATGGTGATGGTGGTGACGCTGGCGGCGGGTGCGGACGCGGGAGCGG
CGTGCGAGCCGGCGCAGCTGGCGGTGTGCGCGTCGGCGATCCTGGGCGGGACGAAGCCGA
GCGGCGAGTGCTGCGGGAACCTGCGGGCACAGCAGGGGTGCTTGTGCCAGTACGTCAAGG
ACCCCAACTACGGGCACTACGTGAGCAGCCCACACGCGCGCGACACCCTCAACTTGTGCG
GCATACCCGTACCGCACTGCTAGCCGCCTAGCCGATCGAGGGCTCCAGGCACGCATGCAT
GTTCCTGTTATGTGGATGTTGGAATAAAATGCTGGTGATCTATGGCGGCTAGCTTGCTTC
CTGGCTAGCAGCTGCTGTAATGAAATTTGTGTTGCAACTTTTTTTTTAGTCCCATCCAGA
GCTCTTTTCTTTTCTTTAATTTGCTGTAGTAATCAAAGTAAGGTAGGTCGCCAGAAAAAT
TGAGTTGGGCCAGTTAATTATGGGGGAATCGATTTGATCCGTTGGATGACACATCTTCTT
CCTCTAGTCGGCTTCCTCCTTTAAACATATCAGTATCACATCGCCTGCTACCGCCTCTCA
CGGCCGCCTCACCGCACCGCCCTTCCCTGAACCTCCCCCACCGCCGATCTTGGTGCCGCC
CCATACAATCCCTCTAAGTCCTTCGACCACCCAAAAAAACTCCGGCGAGAGGGCTCCAGG
CATGCATGCATGCATGTTCCTGTTATGTGGTTCCACCGATGATGTGGGAATAAAATGATG
GTGATCTAGCTACAGGCGGTCAGGTTGCTTCTTTCCTGGCTGCTGCTAGTAATACTTTTT
AGAGCCTCTTTTCTTTTCTTTTGCTACTAGTAATGAAACTAAGTTAAGTCACCAGGAAAT
TTGAATTGGGCCAGTCAATTCCGGGGGAATCGATTTGAGCCGGTGGATGACAAACGAACG
GTGATGCTCGCGTCTTCCTCTGGTCGATTTCCTCCTGGTATTCTAGACGTGGTCTGGCCG
ATTCACCGATTCCAAATATCACTTTCACATACTGAAAGAAGCAACTTCACGAATTGTAAA
TCAGCTTCACTCACTGGAAATATGAGTTACACTTCTTTGAAAAAACGGTTTCACATTTTT
GAAATAATCGTTTCAAATATTTGAAGAAAATCAATTTTACGTATTAAAATATATGCTTCA
CAAAGAGAAACAATCCCTTTCACATATTTGAAAAGAGAACTGCGTTCCACAAACTGAAAA
TATCAGTTTCACACACTGCAATAAACAGCTTCACAAAATGTAAATCAGTTTTACCAAAAC
TAACAGAAGGCACTTCCACATTTTTTGAAATAACTAGCTTTGCACATTTGAAAATACAAC
AGTTCTATGAGTTAAAAAATAAATATGTTTCACACTTTGAAACAAAGTTGTTTCATACAT
TCGAAAAATATCAGTTTTGCGTACTTTAAATAATCAGTTTTACAATTTTAACTAATCAGA
AAATAACTTTGGAGATTTCACATATTTCAGTTAGACAAAAAAATTTGCTTCAGTAAAAAC
TCCATTTTTTAACCCTGATCACAAGTCCTGTTTTAGATGTGTCACATATTTTAATAAATT
GATTTTTAATATCACTATCCACACATATATATAAATGAAATTTATGCTATGTTTTGTTAT
TTCAAAAACTTGATTTCAATGATTTTATCCAATTCTAGAAGAAAAAAAGTAATTGCACAT
CTTAGTTCTTTCATTCGATATAAAAATACACAAGTTTCAGTTAATTGAAATACAATGGAG
ACAATGAAATATAAAGATGCTAGAAATGTGTCCTAGACTGATCTTGTTCTTTTTTTTTTG
CGGGGAAAAGGGATTTTTTATTGCAATGTTACAGTGTTACAATCAAGAGGCCACAAATCC
TCAATACAAGGTGGAGCCGACTGTAACCACACAGCTGTGGTTCTCTCGGTGTTATCGCGA
GAAATTCAAATGTATATAAAAGATAGACTCTTTATTTAAAATCTAAATTATCAACAAAAA
ATAGTAGATAGAGTCTTTGATGTAGTCTATGGACCTGGATGTAACTTTTTATTTTTACTT
TTAGTGTTTTTTGTACTACCTTTGCTGTTGATACATAGATCTGAAGTTTTCTTCCAAAAA
AGGCATGCATGCAACGGGTGTTCCGTGTAGGATTATTCTATGGGGCGCTGCTAGAAATCA
ACCGGCTGATAAATCAGCCGGGTTGTGAGCCTTCCGATCACCTGTCCCACTTTTGTTGGA
TCACTCAACTCAACTTCCCCTCCACCAAACTGATGCAGGTCCGGGTGGAGTCCATGACAG
CATCGAGCACACCCTCAACAACACCCTCCTCCCCTGCTAAAGCATCATTGAGTCATCAAG
CACACCCTATACACATAACATGTGTCCACGTTCCATTAATGCGAGGACCTATTCGATGCT
CTGCGCATCAAACAAACATCGTGGAGCGTAGGGCTGACCCAATGTAACGCTGAGTGCTGA
GCGCGTGAACGAGTTTCCTTCCAAGTCGCCTTGTCTTTGCTTTGTTTTTCACATTGTTTC
ACTCTACAATCGCCGGCTGGATGTTTTACAAATAGAAATAGATAAAATTATACTCTTGCC
TACAAAAAATATTCTCAAATTTAAAAAATCTCAGATTTTAAAATATGATCTTAAAAGTAA
CAAACCATTAAATACAAATAATGTTCCAATATATATATTTTTTACCAAATTTAAAACAGG
AACACTCTTCCAGAATTTTGAACCTTTTTGGGAAATTCCAACATCTTTTGGAAATGTGAC
CATATTTTTTCCTTTCTAAAAATTGATTTATTCTTTAAGACATCAACATTTTTTTAAATG
CAAGTTAGAAAAAGCATTTTGAACATTTGATGAAACGCAAACATTTACTCAAATTTGCAA
ATATTTCAATATATGTTGCAACCTTGAAAGAATGTTCATAGAGTTGCTGGTGTGAATTCC
ACTATTTCTTGCTTGTCTTAGAGCAAGTACAATAGGATGACGTAGGCGGGCTGTAAGACT
TAAAATAATATATTTATGATAAGTTGGAAGAAAGAGAAGGGAAGAGAGAAGAGAAGCGGG
CTACAAACTAACAGCCGGCTGTAACACGTGCTCTAGACACTTTGTGAGAGAGGATGGTGG
ACCTTGTATCAATAAAGTAGTACTCATTTACATCTACCTATTGTACTTGCGGGCTATAAG
ATTAACCATAGATGACGTGTCAACATCATATAGCCAGCAGCTGGCTGTAGTATTAACCAT
GCTCTTAGTCTCATAGACAACTAGTGCCCCCTCCCTCTATTTATTTATAAAAATGTAAAT
ATGTAAGCTTTGCCAAGTTTATTGGCCCAATTGATTGATATATTGGTAGGAGCCTCTCCT
ACTGTCTTTTCCCTGTAAAAAAATATATATATTAAAAAACAAGATTAATAATGAATATTA
TGATTTGTTTTACAAAGAAATCAATATGAAGCTAAACAGAAAAAAATAACTGATAATAAA
CATTAAATTAAAATAAAAACTGGTAGAAACCAAAAGAGAAAAAGCAGAAAATCAAATTTA
AGGCCGGAACATTCTTTTTTCTTAAGGCTTGAACATTTTAGAAGGTTCTGAAACTAGCAG
AAAATGGGGATGAAACCTTCTCAAACTTAACGGTAGGCCCACCAGTGTGTAAGCTACCTA
TTGGGAGCCCCCCGCCCTCTAAAAATACTTTCATTGTGGGGCCTACTCCCTTCACTTACT
ATCATCTATAATTAGTTATAAAAACGCAAGGTTGATGAATCGAAATGATCTGACTCATCC
AAACACCTATATCTAACGTCTCACATTGCTTCAATGATGTATCCATCAGATAATTAATAA
TTTGAAAACTTGTTAAATGCATTAATCTTAATTTGGAAACCACATTAATTGTATTGAATG
CAATAAAATGCTCATGAGTGTAGGCATTGCTTCGCGGATGTGTGTTGGATCTTCGTGATT
CCGGCATGTCTTTTGATCCGTCACAAGGGGTGTTGTATAATGAAGTGTTGACCAAATGTA
CGAAAAATTTGAGAATTAATTGTTCAATATCCTCAAGACCATGAAATGTGGAAATACGAA
TGACGACAATCATGTGATGATGGTGAACAAAACCACTAGCTTCTAGAAGAAGGATAATGC
CAAATCCAAGGGTGTTGGTAAGACCCACAAAGTTGGAAAGCTTAAATGTGGTGCCTCCTC
GGACGGTGAGTGTTTCTCCTTTAAGCAAAAGGGTCATTGGATGAGAAACTGTAAGATTTT
TTTTTTTTTTTGATATGGAACACCAAGCATTCCAATTAGCTAGTAGCTGCACAATCAGCA
GCTACAGCACCAATTACAACAGGTGGGAGGTCCGTCAGCCAGATGGCCGGATCGCCCTCC
ACCCCTGCACCTATACGAGCCAACTCATGAGCTGGTAAGTTACATTCACGTGGACAGTAG
TGCACTTTAGACTCGATGAAACCCATGTGCAGCGAAAACTTGGTCTCTCGAAAAAGAATA
CCTAGGCTTGATTGGTCCAAGGAGGAAGACCCAACAACATGATGCAGCTGCAGACAGTCT
GTCATAAAAATCACCCGACCCATCCTGAAACTTTCTGCAAGTTTAATGGCTTTCAATAAC
GCTAGAGTTTCTGCATGGAGTGCTTCGGCGAGGTGCCATAGTTGACCGGCTGCTGCAAAC
ATGACGTCCCCGGCTGAATCTCGAGCGACACATCCCCATCCGCCGTGCCCAGTTGAACTC
TGATAGCTTGCGTCGTAGTTGATCATGATCCATTCTTCAGGGGGTCTCTTCCACTTATTC
TGCACGTGAGATTCAGGTTTGGGCCCTTGGCTGTGAGTTGCCAACCATTCAGCAGTGAAC
CCCGAGATCGCACGCGCAAACTCCTCCGGAGACAAGCGCAGCTCCCCGTGACGATGCCGG
TTTCGTTCAGTCCACCAACGCCACAGCAAACAAATGGTGACTGAACGAAACTGTAAGAAA
TATTTGGCATAGAGACAGAAGTCTAGAGTGTGTGCCCCAGGTATGAATGTCATACACATT
ATTGACGTTTTCCTTTCATGCCTTGACTTTCATTCTCGATATTTTGGTACCGAATTGGGT
ACTCAAATTTATAATTCGGTATGCAAGAACATAATGATTCATTGCCCTCAAATTGTTGTA
CGTTTTTTTAGAAAAGGAGAAGCCCCTCTGGCATCTGCATCAATACGATGCATGCGGCCA
TTTTTATTAACAAAAAGTAACAAACATCCAGAGGTTCCGAACAAGCTCAAAACGAGCAGC
ACAAAAATAAAAAGTGTACGAAAAGATGCCACAACCGGCGAACATAGGCTTAGATGCCTA
ACCATCTATCCTATTACCAGACCGCCATTTAAACCGATTGTAGATATTCCGATCTACCAT
CTCTCATCGGATAGACCCAGTAACCATAGGCTCCCTGCTTTCCGCAGGAGTGACAGACGA
TCATGTACGGATCAACGCCGATGCGCTGTAGAGTACCTGCAATAAATTAAAATTTGTTTT
TCTATTAATGATCACGTCATTCCTACAGTTCCATATAGCCTAGAGCAATGCACATACTCC
TATACGAATATGTCTAGCAAAAGTTATGTTGACTCCATTTAGCCACGTCTCAAATAGCTT
ATCCATGCTATCCGGAAGTGTGATATTAAAGGCTACGCAGACTGTTTGCCACATGATTTT
TGCGAGCGGACAATGGAGAAAAAGGTGTTTGATAGTCTCATCATGGTCACAAAAAGCTAC
ATCTTTTACTTCCCTCCCAATTTCGCTTTGCCAAATTATCCCTAGTAAGAATCACCTTCT
TTTGGAAAAACCACATGAAAACTTTGATACGCAAGGGCACTTTCACCTTTCGAATATGAT
TAGACTTAGGTAATGATATTGTGTCAATAAGGCTCAAACACATCGATTTGAAAGAAAATA
TGCCATTAGTCGTTAGCTGCCAATGAAGCCTATCGGGTTAATCCGATAGTTATCCATGAG
TCTTGTGACTAGGTGTATCCAAGCCTCCCATCTATGATCTAGTAAACCTCGTCGGAACTG
AATATTTAGAGAATTGGACTATAATACTGTGGCAACATAAGCCTGATGAGGACATCAACA
CCATTGTTACACCCA