Contig Data
morexGenes
Links



Map Locations of contig_38298 (4307 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38298

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53370 3 1696 bp AK361781 Available Available None
MLOC_53371 1 890 bp None Available Available LOC_Os07g31620.1, FRAME:-3, EVALUE:2e-26, 13107.m03202 protein transposon protein, putative, Pong sub-class





CDS Structure of MLOC_53370






CDS Structure of MLOC_53371






Contig Sequence (4307 bp)

>contig_38298 4307 assembly3_WGSMorex_rbca.fasta
GGTGCCCGCGCGGCGTCGGCCGTGCCGGTGCGCGCGCAGGCCGCCGGGGCCGCGAAGAAG
AAGGTGCTGGTCGTCAACACCAACAGCGGGGGCCACGCGGTCATCGGGTTCTACTTCGCC
AAGGCGCTCCTCGCGGCCGGGCACGACGTCACCCTGCTCACCGTCGGCGACGAGGCCTCC
GACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGTCGGATGCGCCGGAGTTTGTTCG
TGATCGGAGGTGGATTTCCCTCTTCTGTTTCTGACGGTGGGTTCTGTCTTCTGTGCGGCG
CGTGCGTGCATGCAGGAGCTGACCAGCGCCGGGGCCAAGACGGTGTGGGGCGACCCGGCG
GACGTCGGCGCGGCCGTCGGCGCTGCGTCCTTCGACGTCGTGCTCGACAACAACGGCAAG
GACCTCGACGCCGTCAAGTATGCTATGCTCTGCTCGCTCCACGGTTAACCGCCTCTGTTT
CTTGCCACGAGATCGGTCAGCAATGCAATGTGATTCTTGGTTGCGTGCAGGCCGGTGGCG
GACTGGGCCAAGGCGGCCGGGGTCGGCCAGTTCCTGTTCATCAGCAGCGCCGGGATCTAC
CTCCAAACCGACGAGCCGCCGCACGTCGAGGGGGTAAATCATTCATTCCATCTCCATCCA
ACATGACCAATGTTCATCGGTTGGTCAGAGGCGAGTAGCCGATGATCGTGATTCCATTTC
CATCTACGTCGGTGCTCGCATCGCAGGACGCCGTGAAGGAGAGCGCCGGGCACGTCGGCG
TGGAGAAGTACATCGCGGCGGAGTTCGGCAGCTGGGCCTCGTTCCGGCCGCAGTACATGA
CCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAGTCAAAAATCA
TTCTGCCCAGCTCGCTCGATCACCCACAAATTAGTTCTTGGATTCATTTTGCAATCAACA
CATTGCATTCATTCTTGGATTGAAATTGGTAGGAATTGTGCGGAAGCGGCCGGTGCCGAT
CCCGGGGTCGGGGATGCAGCTGACCAACATCTCGCACGCGAGGGACCTGGGAAGCATGCT
CACGCTCGCCGTGGAGAACCCGGACGCCGCCGCCGGGAAGATATTCAACTGCGTGAGCGA
CCGCGGCGTGACGCTCGACGGCCTGGCCAAGATGTGCGCGGCGGCCGCCGGCGCCACCGT
CGAGATCGTCCACTACGACCCGGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTT
CCGCAACATGGTACGTAACAAAAAGATAATCGAGATATTATAATTGCTACCTTTGCAATC
TCCGGTATGGATTGGAGCGTGATGAAGATGTTGCAATGGCGATGGTTGCAGCATTTCTAC
GCGGAGCCTCGGGCGGCCAAGGAGGTGCTGGGATGGACGAGCACCACCAACCTGCCGGAG
GACCTCAAGGAGCGGTTCGCCGAGTACGCGAGCAGCGGCCGGGGGGAAAAGGCCATGACC
TTCGACCTCGACGACAAGATCCTCGCCGCCGTCGGGGCAGCGCCGGTCAGCGTCGCCGCC
TAGGCGCGCGTGTTCGTTCTTCGATGCACGGCAGCGGGAAAACCATTTTGAAAACACAGA
CGCCGGATTATATCACACAGATGACAATAAGCACATCTAATCAAGTTCGGGAAAACATTT
TTCTTCTTTTGGAACGTGTGAGTTACATCATGCAAGTAGCTGAATCAGATATCTGAATAT
CTGTTCACTGCTGCATATTTTGCTCACTGCCAATCCGTTGTGATTATAATACAGACGAAA
GGTTCAAATGGGGGAAAAACAGAGGGGATATAAGCAACCACACGGCAGATATGTTATTTT
GCTTATTATGTTGTCACACTTCTTAAAATGTGATAGTTTTGTGGACAAACCCCAATTGTG
ATAGCTTTTTTGTTAAATACTCAGTGAAAGGGTGTGTTCAATACCTAACACTGAGTTATC
TGGTGCTGTTTTTCCATGAATATGACCCCATCAAAATTTACAACATAGGAGCACCTTCAA
CACATGCGGCATGCTTTTTTTTTTTGCAATGCGGAAATAACCTTTTTGCGCATTGGGTTG
ATGATTTGCTTTAGCAGAAGCGCTATAATATTGCGCGTCGTATGTAGCGCTCCAGCAGTG
ACGCGAAATTTGCAAGGCCCGCGTCCAGCACAAACACATTTTCCACTTAAACATAAAACC
AAAGAATCAAACATACACAAAGGAAATAAGCAATAAATAGTTTAATTATTATACCAACTC
AAACAAATAGTTTATTTTTAATACAACAAACTTCTCAGGAATAATACAACAAACAGTTCA
TATAACATCAACTCATACCTTGCCCATTCCATGACCATCACTCCTTAACTAGCTCCTTTT
TGAAGCTCATCATGCATTTCGCCACGTCGGATGACATTGATAGGGGCAACAAAGCAGGCC
ACACTTGCACAATTCCAACTGCGAAGCGCTTGGTATACATGATAGCTTGGCTCTCACCCA
TGGTCAAGTGGTCATCACCTAGATCCGTCGGAATACCGTATGTCAACATACGCAAAGCAG
CGTTCACCTTTTAAAAGGTACTATGCCCGAGTTCTCCGACGGCATTCCTCCTTTGCCGAA
AAAACCGATCATGTCTTGTCAGTTTCTTCGCAATGTGTGTGAACAACTCGATACTCATCC
TGAAACGGCGTCAAAAGTAGGATGTGGGGTATGTGGGATTCTTCTCAAAATAGTTCCTCA
TCAATCTGTTGTGGGCATCGATCCTTTCCCTCCATAATTTCGGACGACCAAAAACCGAAC
CACCGTGCTTCGGTTTTTATTAACGTGGATAGTTAGGATCATTACAAATTCCTCCTCCTC
TTAAAGATCAAATTCTTCATTAGAAAAAATGTAGGACGAACCCATCTACAAACTTGAATT
TAAACTAATATAAAACTATAAACACCAGCATGTCAGATTCATTTAAGAACTGGGCCCCGG
ACGACCCTGGCCTACGCCACCGCTGATACGCCAGATGTGGCCCAATGTAGCCGGCCACTG
CTCTCCCTCACCACCTCTTGCCCTCCAAACCCCCGTTTGTCGTCCATTGAGCGTTGAAGC
AATCGACGGGCAAGTGTAACCATCATATGTATGCAAACTCCAATCTTGCCAAGACATTCA
TGTTCTCCGGCATTGCTCCTAGAGCCTAGACCCATGAACCAGCGAGCTCCCCGAGAAGAA
GCTCCACCATCCCCATTGGTTGCATGTTCGCATGATAACGGTAGTTGCACATGATAGGAG
AGGGGCGGGAGGGAGGCATGTCTAGGCTTTTTTGGGTTGCTTAAGTTGCCCTACACGAAA
GCGGCCAGAGTAGGCTTTCCTAGTCAACGTCGTATCTTCCTGGGCGACAGTGATGCTAGG
ATTTTCTTGGTTTTTCCTTTATCTTTCTCTTTTATCTTTTTCCTTCTTATAACACATGTA
TAATTTTTGTCATACACAATGTATGTTTTCATATAAGTTAAGAACATTTTTTGTTAGCTT
AACAGTTTCAAAAATATGATTAACATTTTTTCGAACATATGTTTGATATCTACTTTTTTC
ATCCACATTGTACATTTTTTATATACATGTTTCACTTTTTAAATACATGATTCACATTTT
TCAAATTCATGATTAATATTTTTTTCACATACAAGTTTTTTAATATCTTCTCAAATACAT
ATTTAAGTAACTTCTGTAAGAACACATTTTAAAAACACATTTTTAAACTATGTGGACATT
TTCTACATTTTATAACATTTTAAAATATCAATAAAATATTTTTGAAAGACGCAAAGTTTA
AAGACTGTAATATATTTTTTAGTGGTTGAATTTCTTTCTTAAATTACACAAACATATCTG
ATATTGCATTTTTTTTAAATGCCACTAAATGTTTTAGAAGAAGGGGAGCCTTGGAGCAGT
AGTAAATCTTCTGCCTTGTGACCATGAGGTCACGGATTCAAGTCCTGGAAACAGCCTCTT
GCAAAATTGTAGGAAAAGGCTACGTACAATAGACCTGAAGTGGTTGGACCGTTCCCAGAC
CCTGCGGAAGCAGGAGCTACATGCACCAGACTGTCCTTTTTTAAATGTTTTAAAACACAT
GAATATTTTTAAATGTCATGGATGTTTTTTTAATGTCACGGAACTTTTTCTAATGTACTA
ACATTTGTTAAAGTACATTAAATGACTAATAATGCGTTAACATTTTTCAGTTATGTCATT
AATACTTTTAAATATTAATAATATTTCAAATATATATAAATGAAGAA