Map Locations of contig_38280 (8005 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38280

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53348 1 3960 bp MLOC_53348.1 Available Available LOC_Os02g41610.1, FRAME:+1, EVALUE:3e-66, 13102.m04592 protein expressed protein





CDS Structure of MLOC_53348






Contig Sequence (8005 bp)

>contig_38280 8005 assembly3_WGSMorex_rbca.fasta
AGAGGGGACGCACGCGACGACGACGCCTGCGCGGGGAGGGGCGACGGCGACCTGCGCAGA
GGGGACGCGCGCGATCCGCCCAGATCGGATGAACACGGTGCATCCGGCGAAAACGGTTCA
ACTGACGCGCCGTGTATAAACGTTTCTCTACTGTAAAAGTCAAAAAGTGTTTGCAAGAAT
TGCTTGATTCTCATTGATTTTGACTATTTATATAAGGAGCGGTTACAAAGATATGAGATG
AAATCTAACCAAAAATAACGGTTGCTATTACAAGAGACAAAGTGACAACTGCTATAAACA
GTTGCTAATAGGCAAGACAAACTTTAACTGCTAATTGCAGTTATCCTAATCAATGTCGGG
GTTAATTAGCACATGCTAATTACCAATCCTGCACAGGCTAAACAAACTACTCGCAACATA
TACAACCGCGTGGCATAACAAAGGTCAAACCTGGCATCGTACAAGGCACGTTTGCACGGT
CGCCATAGACCAGGAACGAGAGACCAGACGCGCGAGCACAGTGCGCCACCCTACCTACAT
CCTCCCGTCCCCTGGCCCAGCGCAAGCGAACTCGCAGAGCGCAATGAATGACCACTTGGA
CTCACCACGGACCTGACAAGACGACTGTCGCGCTTGCTTTGAACACGCCACCTCCCCTGC
TTTTCATCTCGGTTTTCGTCGCAGAGCGGTTCGCTCACGCCCCACGCGCCCAAGCCCAAC
CCACCACCGTCAATCCTCACAAGTCACAATCCCCCGTCCCCCAACCCAAAACCCTCGTTT
CATCGGCGGCGATTCCCCATCTCCTCTGCGTGCCGCCGGGGAGCGCTCGATTCCGGCCGT
CGTTGGGTAAGCATTACTCTTCCAGTACACACGTTCTTTTTTCCTGCGCGACCCGATTAA
TTGCTTGCCGTCGCGCACGTTCGATTTTCGTTTGAGTTACGGCGGGATCGCGGTCGCGAT
TCGGGGGGAAAGGGTCGCGCTCCGTGGGTTCGGGGCTTTGCGCGGTGGGTTTTGTCCAGA
CCAGAGGTTTTGGCGAGGTTTATGCCCATCGATTCCGCCATTCCGGCATGCAGCTTCGAA
GGCGACCCGGTTGTTGGATTTAGCGTATTTTCTTCCCGGCTGTGCATGCAAGTCGGACGG
TTGCGCCTTCTCAGGCTTTGTTTGGATTATCGTTTAGCTTCAAATACCTCTGTAAAAAAA
ATACAGATCTCCTTCCATCGTTTTGCTTTCGCCTAAAATCTTTTAGCCTCCGGTAAAATA
CATCTGTATAATTAATACGCGTGTATTAAAATACAGGGCAACCAAGTGCGGCCTCAGTGT
GGGCGACGTTCAGTTTTCCTTTTACCTCTCGGTCTCACCTCTAGATTCCAGTATGGATCC
CCCCAGCCCCCTCTTTAATTCGAGGCAATCGATTTTGAGCATCTAATGTGGATATGAACA
CCGATTGGCTTAGAAGTTACCATGTTTGACCACCCCCCTTCAATTCCTTCTCACATTCGT
GTTACCAGTTTAGCCCTTTACATCACATCTAACTCTGTTTGCTGGAAGATGTAAAAAAAA
AAAAAAACTCTGTTTGTTGGAAATTACTTGTTATTGGCAGATGCTTTCAATTCTTTTTTT
AAAAGGTGCTTTTTAATTCTTTGTTACATCTAATACGAATCGAGCCTAGCTTGGTTGGTA
GGAAGTGTGGATATACATCCGCAAACCCTGGTTCAAGTCTTATTCAACTTGTACTTGGGT
GCTTATCATCGTTTATAAAGCGTCCCCTCTTGGACGCTTAGGCGATGCTTAGGTGGCAAG
GCGCCCTGGCAGTGCCTTATAATTATGCCTGCTTTAGGCGCTTAGGCGTCAGGGTGGTTG
TTAGGTCGCCTTACGGCCTTATAAACAATTGTGCTCATTCTTATCAATTAAATGAATAGA
CCAATTTTGTAACATGCGAACATGAGGCTGTGTCCTAATGGGCAATGGTCTGTGCGCCAT
GCGCGGCTGCGTGCGTTCTTGTGACAGTGACGACACAAGTTGACATGGGAAGCATCAAGT
GACTCGCGCGGTAGTGCTGCTCATAAATAAATTCCTTTTTGTTTCGCAAAAACAATTCGT
TTTTGTTCCCCCAAAGATCACTTTTATGACAGCGAGTATTTTAACCCTTTTTTCACCAAT
GTTCCCATTCAAGAAACCTCCTAACACCAATTAAAAAAAAGCTCCTGACACAACACACTC
CATTGAACTACTCCGTATTTGTCTCCAAACTGACAGAGCAGCTGTACATGTCGAACTGAC
GAGGCTTGCCACGTTAAAATGTATTCATCGAATTTGCTTCTTAGTTGGTGGAGGCGCACC
TTTTAACCTTTTGGGTTGCGCAATTTAGCCGAACCAGGTCTCCACAACTTACCAACCGAC
GGGGAAGGTTTGGTTCGGCTATTCCTGAACAGCTAATTGTGCACTCTTGTCAGCTTGGAA
ACCTATTCGAGGATGTGATTAATGTACAAGTGGACAATTTCTTTGCGCTTTGCAACACGT
TGGAGAAATGGCCCTAAATGTGGAATAGCTTTCATAATTGATAGCTGCAAGGTACTCCTA
CACAAGAGGTTTTTTTGGCCTGATTTTAACAGACTAGAGGCATGAAAATATGAATACTTT
GTTATGGTTAGTGCCTATGGTATGTGAGTAATGAACTCAACCCATGTTTCCTTGTTGGTG
CTTCTATTACTTCAATTATTTTGTGTGAACAATAAATTGTAGAAGATGCCATCAGATTTT
TCCTTAGACTGTTGGCCCACAAATCCACAGCCTGCAAATGGAAGTATTAGAGATATTTTC
ATCATAAATTACGCCTGAAATGTGGAACATTACTTTATTAAAGAAATTGGTTAAAACTTT
GAACTTTGATTTATTTCTATGTTCACAAAGTATCATAAGAAATTTCTGTATCATGATTTT
TAACAGAGAAATTGGAGGCATTTTTGTAGTTCTCCTCACCTGGTTCACATAAATATAGAA
GAATTTTGCATCCTTCCTTGACCAATGATACAAATCTCACTGTGTTTAAATGCATGGTCT
TGAAATGTCTATCCTTATCATTGTTTAGGCCTGCTTGATCTTCCGCGTAGCACATATATG
AGCCAGTTAGCTGGTGCTTGCATCACGAAATGATCCTTAATCAGTTGCACAGAAGAGAAT
CAACTTAGCTACGGTGGAATTACTATCTCTGTGAGGAAAGTTGTAGGTTTTTTTCTGTTC
ATACAAACAGAATAAAATTTCCACGTCAGTCAGATAGTCACCCAACTAGATTGAGATATT
ATGGATTTCAACAAAGCCTGCAAGGGATCATGCGAATGTGAAAAGTGGGAGTTTGGCAAG
ATTGGAGAGGAAAAAAATAAACATTATGAATCTGAACTAGAAGAAGGTGAGGTCAGAGAG
GCAGATGAGGCATCCGGATTAGAAAGCCCTATCCAGAAGGGCATAGCTGCAAGTGTTGCA
CAGGAGCAGGCCCATATAAGGCAGTCAGCTTCACCGCAAAGAGCTTCTCATAATTTAGAG
ACTGCAGGTATTGTGGTTTTGCAACATAGAGTGATCCACGAACACATGTCCCCAAGCATT
GTACGCTCATTTGTGCAAGATGTGTTTGAAAAAGGGAAGGCCCTTATGAGGTCATCAACT
TCACCTGAAAGAGCTTCCCGTGAAGGAAGGAGTGCAGGTATTAATTTTGTGCAGCAGTGT
AAGCGTAGTGCAATCTGCGAGGGCATGGCTGCAAGTCTTAAAGAGTCAAGCACATCTTCT
CAAGTGGTGGTTGAGGAGTCATCAACTTCAGCTGAAAGAGGTTCTCGCCTGGGAGGGACT
GAATGTACTGCTGTTGTGCAACAATCTAAGTATGCTGCATCTGAGGGTCGATATGTTAAT
GTGAGTCAGTCAAGTTTGCATAGAAAATATGGGAACCACCGTCGAATCTATTCACCATCT
ATCTATAGTAGTTCAAAAGAAAGACATAAGAGAAGGAAGGAGGGATGTTTTGGATACTCT
GATTCCCATCGGGTCATGAAAATGATTGAGGAAGTTTATTCAGAAAGGTCCAGAACACTA
CTGTTACTGCAGACTAAAGATCGGAAGAAATTCAACAATTTGCAAAAAAAGCAGGAGGTA
AAGTTCTTCCAAAAACATGTGAATTCTTATAAATTCCACTATGCACATGTTGCACCAACT
GTAAGATATTGCAGGATGATGTTGCCTAAGCTACATTTCAGCATTTTGCGCGACAGATTT
CATCGACATATGATATCTCAACTGATAAAATTTTGTAGACAGCATATAAGTGACAGGGAC
AAAGAGTATAGAATAAAAGAGCGCTGGATATTTGAGGCCAAAGCTGGCTACCTTAAGAAA
TGGTTCTATGTAACTGACTTGACATATTCTAGATTCACGTGGGAGAATCTAGAATGCTGT
ATGGCTGACTATTCAGATGGTGAACATCATCTAAAATATTTTGACATGCAATCTATAACC
ACTCAAATTGAAGCGATTGCCTGTAATAAAGAACCTAGAGGCACCTTTGCAACTGATATT
ACTGAGCCCATTCCAGGAAACTCACGATCATTGCTTGAAACTAATGAACATACGAAGCTC
GGGTTTTCAGTTGGTGTAGCAGAAGAAATGGCCACCTTAGAAAGCAGGTCTTCACAGTAC
ACCTGTGCTCCCTCGATGGAGTTTTGTCATGAAAATCGGACACAAACTACCTTCCTGGCA
CCAGATCAAAGCGAGGGAGGAAATGTGGAGAGACCCTCTGCTTGCCAGCTTGACGTGAGT
GCAGCACTAAAACCTGCTAAGACACTGACAACAGGCAAGGCAAGTGATGATTGCGAGCCT
ATTCTAGAGCACTCACAATTGCTGCTTGTGACGAATGGAGCTACAAAGCCTGGATTTTCA
GTTGGTGTATCAAAAGAAATGGCTACCTTAGAAAGCAGCTCCTTGCAGGTAACCAATGTG
TCAGGAATGGAGTTTTGTGAAAAAGATGGGACGCAAATTATCTTCTCAGCAGCTGACAGC
AATGAGGGGCGAAACACGGAAAGCCCCTGTGCTTCTCGGTTTGTAACGAGTTCAGCATCA
GGACCTGTTATTGCAGTGAGCACTGATACAGAAAATGCTGCCGTGATTCCTAGAGAAAAA
CGAAGGCACACATGTTCAAGCAATGATATTTCAGAAGGTCCATGTTGCAGGTCAGGGAGA
AAGTTAGGTGAAAAAGATGGGACACAAATCTCCTTCTCACCAGCAACGCAAATTGCCTTC
TCAACAGCAGCACAAAACGAGAGGGAAACAATGGAGAGCCCCTGTGGTTCTCAGTCTGTC
ATGAGTTTAGCATCAAAACCTACTAGTGCAGTGGGCAATGACACGGAAAATGCTGCCTCG
ATTTGTAGAGAAAAACGAAGGCGCATCGTTTCTGGCAATGATGATATTTCAGAAGGTTCA
TGTTGCAGGCCAGGGAGAAAGTTTGGTGACAAAGATGGGACACAAATCACCCTCTCATCA
GCAACACAAAATGATGGGGGAGACATGGAGAGATCCTGTGCTATACATTCTGACACAGAT
GCGGCACTAGAACTTGCCATGACAGTGAACACTGATTCAGAAAATGCTGCATCTGGTTCT
AATGAAAAGCAACTGGCTGTGATAGTGAACACTGATTCAGAAAATGCTCCATCTGTTTCT
AATGAAAAGCAACTGGCTGTGACAGTGAACACTGATTCACAAAATGCTCCATCTGTTTCT
AATGAAAAGCAACTGGCTGTGACAGTGAACACTGATTCACAAAATGCTCCATCTGTTTCT
AATGAAAAGCAAAAGCACATGAAATCAGGCAATAATATTTCAGAAGGTTCATGTTCTAGG
TCTCAGATAAAGCCTACGTCGAACCTTTTCAGAACAACATTGCGTCAAGAGGTATTTTAG
ATCATACCTTTTAATTATATTTTAGTGTTGTCTCAACAATTATTTTTTTATGGATTGGGC
TGCGACACAGGAGAATTTATGTTGAATCTATGTAAACCGAAAATTATCAAGAAGAAGCTA
GTTATCGTTAGAAGGATAAACAGTGAACAATAAATTTCTTGTTTGTTTTGTACTCTAACA
TCGTCTGCCGAGTGTTAAATTGCTTAATTTACAAGTAATTCAAGTATTCAACCATGATTG
GATGGCTATAACTATACATCCACAAGGACTGTCAGATTACATCTCATTTTATTTTTATTT
TTTAACTGGTCTCTAGGTGAACGTATAAGAAATATTAATAGTGTCTCCTGGTCATTACTT
GTGGCCACTTATAAATTGCCATTGACATATTTGGCATTGTTTCTCTGCAGGAACTTCCAG
CTGCAAGATCACCTTCACCTTCAGCTGATAATAGACAAGTTGTTCAAGCTGAGGATATAA
GCAGCGAGGAAGTACCTTGTAGTCAAGTACCTTCCTTTGCACAAGTTACCGAGCAGTCAA
ACATGCACTTCAATACCCAAAGTGTGATGAACCATCATCATTTCGGTTCAACTTGCCAGA
TTGCTACTCCTCCATATTCACCACCTTGTGGGGATACTCATTCATCAAGAATTGAGGTTG
ACAGTGTTGGGGCATCACATGTTCATCCAACGTCAGCCAATCAGATGCCAATAGACTCCA
CTCCTGGGCCACGTTTGTCTGAAGATGGGCTTGATTCAATTCACAGTCCTAGGGCATCAC
ATGTTCATCCAGCTTCAGCCAATCAGGTGCCAACAGGCTCCCCTCCTGGGCCATCTTTGG
CTGAAGATGGGTTTGACTCGGATATATTTACCATTGAGTTGAGTCGATTACAAAAGTTGG
CTAATCTGATAACAATGAGGCATCAGGAGAAGGTCTCTTTCTTGAATTTCTCTTCTACTT
TTATATTTTTATCTTATTACAAGAAGCACGTGCACAGCGATTGCACCCTATTTAGGTTTT
ACTCATGAATCTCTGGTTGTGTTTTGCCAGATAGAACAGCTTAATTTGGCACGTGGAATA
GAGTTGGCTCAAGCTAAAAGGAAGTATGATGGGCTGGAATATAATTTAGAGGTAGAAACA
TTACAGAGAAAGAGAGAACTTAAGACAAAAGCTGATAAAATGTACAAACAGCAGATATTG
GCTGAGGTATTACAGGTTGTATTTAAGGCCTCTGCTAAAGTTGTTCCAGACAGTCCTAGA
GGTAAATATCTTTCATACACACCCTGACTCGGTTTATTAAGACACAGTTACTACCTTTGG
CATTGACATAATATTTCTTTGATTTTGTATCAATTACTTGAAGGATTTTATTATTGCTAA
TATATGGGGAAGCATAAGGATATCATAAATGATAAATTGATAGAATTATATGCATTATTA
CCTAGTAGTTCTCACTCTGGCTTGTGTACATTCTGTTATCATTTTGTTTTCCATGTATAT
AGTTATTACATACTAAGTATAACCACGTGCCCTTCTGGTATTGTGCAAGGTTCTTATTAT
TGAAAATTTGGATATTTTCCACTCTAGGGTCTGGGAATTCAATATTTGTTACCCCATGTC
CCAGTGACCCTTTCCCCATGACCCCATGTCCCAGTGACCCTTGCGGTATGGTATCCTGTT
TGTCCTAGTAAACTATTTAATATGCCGTCTTGATATGGCAAATATCTCACATTTTCATCA
TAGTCTGAGGCACAAGTAAGGTATGACAATCCCGCATAAAATACGGGCACCTCGGGCATC
ATAGTGACTTTCGAAAACTTTTTGGGTATTACTATTTCTAATCTTTTAGCTATACATTTG
TTCTCGAACATTTTTTTCGAAAAAGGGAGCAAGCCCGGGCTTCTGCATCGAGCGATGCAC
ACAACCATATTATTAATTATTCAACAAAGGTCTGCCAAAAACATACGTCAAACAACCCAA
AGCCACCACCACTCCTTCATGCACGACAATGGGGAATGCCCACCATCTAGAGCCGGGGTC
ACCGCCGACCCCCCCCCCCCCCCCC