Contig Data
morexGenes
Links



Map Locations of contig_38257 (5437 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38257

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53327 1 1798 bp MLOC_53327.1 Available Available LOC_Os05g30880.1, FRAME:+2, EVALUE:8e-106, 13105.m03166 protein nucleolar matrix protein-related, putative, expressed





CDS Structure of MLOC_53327






Contig Sequence (5437 bp)

>contig_38257 5437 assembly3_WGSMorex_rbca.fasta
CCCTGCCCGTCGACGGCCTCGCCTCGATAATGGAGGTCGAGCCGGCCGCAAGTCGAACCG
GCGGCGGCAAATTCTGGCGTGCTATGGCTTCTTCAGATATGCGGCGATGGATTCCCTTGA
GTTCCGGGTAGATTGCGGCCAGTTCTGCGGCGACCCGTGTGCTCTCACGAAGTTTGACCG
GTCTACGTGTTAAACTGTATACTGTCTTCGAATATGTACATATAAAATTTTCGTGAATGG
ATATTCAGTGCCCTTTCATAAAAAATTTAAGGGCCGAACGAGTTTTGAGGATCTGCTAGA
CGTCTTTTTTTATCGAAACTGTAAACAGTTTTTATTTTTACTTTTATATTACGGTCATTG
CTCTTAGTTAGTTGATTTGGAAAGAGTGGGTTCAGACGGAAGGAAGGGCCTCGCGCTCTC
ACCCCTTACGCCGTAGTTGGTCATTAGAAGCCCAGTATGGCCCATCAAACTAAAAGCACA
ATTGCAGCCATAATATAGACCCCTTGAAGGCCAGAGACAGCAAACCCCTCCATCGCTGAA
ACCCTCCAAACGCTTACCGCAATGGGCAGGAAACCCTCGGCCTCCGCCGCCGCCGCCGCC
GCCGCTGCGGCTGCCGACCACGATTCCGCCGTTGCCAGCGCCAAGGCCGCCGAGCTCCTA
GCAGCAGCAGCTGACTGCGACGGTATCCATGGGCACTCCATGTTCTTCGACGCCCTCGTG
CAGCTTATACCCCCGCGCTTCTACCTCTCCGCCGACGATGACGTTCGCCCCTACTACCAA
GGCCTCTCCAAGGCCGCCAAGGCGGCCATGAAGGCTCAGTCCCGCGCCAATATCAAGGCT
GCCCGCCGAGCCCGCCTCGACCCCGCGGGGCCGCCTTCCTCCACCCTCGACCTTCTCAAG
AAGTCCGTTGCCGACCAAGAGGCGGAGGAGAAGAAGGAAGAGGAGGAGGATAAGTCACAA
GACGAAAGCCAGGAGTCCGACGACGAGGCCACCTCAGAGGGTGGCGACGACGACCAGGAC
AACGAAGAGGGAGATGAAGAAGAGGAGGAAGAGGATGAGGAGGAGGAGATGCAGATCGCC
CCAGCAGCAGTTGTTTCTGAAGACCGATCGGTGACTTACGAGGAGCTGCGAGAGCGGCTT
CATCGCCGCATTACAGAGCTTCGTGGGAACCGGTGCACCAGGCCAGAGTTCCTGAATAAG
CCCCAGAAGGAGAAGGGTAAGAAGGCAAAGGGTGCTAAATTGAAGGGGAAGGAGGATGGT
ACAAAGCGGAAGCGTGAGGATGACACAGAGGGTAAGGATGGGAAGAAGCACAAGAAGGAA
GGGGAAGAGAAGGCACCAGATATCATGTATGGCAATGTGTTGGTCGATCCAAAGGAAGCA
AGGCGGAGGAAGAAGAGGAGGGTCAAGAACAAGAAGAAGGAGCTGGAGCAGGCTAAGCGG
ATGCAGCGGGCAAAGGAGGATCCTAAAAAGGCCACCAAGATGGCCTGGGATGTGGCAACA
AGGCGCGCAGCTGGGGAGAAGGTGCACGACAACCCCAAGTTGATTAAAGAGAGCATGAAG
AAGGATAAGAAGAGGCAGCAGAAGCACGCAGATGAGTGGAAGGACAGGCAGAGGACCGTG
GACATCAAGAAGAAGCAGAAGCAGAATAAGCGGAAGGAGAACATCCAGGGCCGGGCAGAG
GAGAAGAAGGCGCGCAAAATAGAGAAGCGCGAGAAGAAGCTTATGCGCCCTGGTTTCGAG
GGGCGCAAGGAAGGTTATGTCAACGAGTGACATCTACATTGAAGATGATGATGAGTGAGT
ACTGTGTCTGCTTTATGTTTGTAAGGTTGCATATGTTGGTGTTGGTGTTGGTACTGGAAA
TAGGTATCCAGATCATGACTACCATACTTAATTATAGCTGGAAGGTCGAATGTTTGGCAG
GTCATCTGAAAAAGATTTTGAGATATTCCTTTTGATGTGTTTTCATTGAGCTTAGATTAA
ATTGTTGAGGAACAAACTTTTATGTCTAGCTTCATAGCTATCTCTAGCACTAGACCGAGG
AAATATTAATGTTCTTTTATGTCCACTGTCCGAGGAAATGCTAATGATGCTTCAATGGAT
GTCGTTCTTTTCTTTGTTATTCCTAGCAGTGGCCTGATGGATTAGTTATATCAAATTATG
CATCAGTAAAGATGTTCTAGGTATAGGCTTCTCTGAATTCTTCTTTGATTGGTAAACTGG
AATCCACAATGCCCACATCTGATCATGTTATGCATAAGCTACATGTCAATATTGTATATC
AAGCTTACTACTTTGCAAGCTTACTGTAGTTAATGTACGGTCCGTATTATGGCGTTGAGT
TATACTGCAGGATGCTGATTTGTTGGTTTACTCTCCGCAGTTATCCTAGATTAGTTTGCA
GCCTTGTTGGTTAGGCCACATGTATACCTTTGTGTTTATTCATTTGTTTCCACCGTTGTC
AAGGGTGATGTACTTGTTGCCTTCCATTTTCTTGAATGTGTACATTTCTGTTGTCACACA
CACACACACACACACAAGATACATGTACCTGGAATGCAAGGTTAGGATCATCTCTCTCCA
GAAGATATTCTTTCTGTTCGACGAGAAGTTTTGAGAGATATATATGAATCGTGGCGGACG
AGGGAGGATTGATGGAATGTAGATGCGGCTTAGTGCGCATCCATCGAGGTTCTTAACGAA
CACTTCCCCTGAGGTTCTTTCAGATTGCTGATTGCTGTCTACCCTATGCAAGATGTCTCC
TTTTAGTTATCACTTGAACAGGCTACATGGCATTCATCTTCTGTTAGATTACTTTATTCC
TGTGTGATCTCTGGCTCTAAAGATGATAAGTTTCAGAATGTGGTTGATTTGGCGCTAGAA
GCGTTCTTGTTCTAGACTCCTAGCTGTATTGTTCATGGTACTGTTTTTCTCTGCCTTTAT
AGCCGAGGATTACTGAGACTGTTTGGACTGGATTATGATTTCGTAGCATTTTTTCCATGT
GAGAGATGGTATATTGATATCAATATCATTCTGAAATAATAGCGGATTGTTCTAAAGGAA
AAACTAGCAGTGCTCTATGTTGTAGGAGCAGTATGCTAATTTTGCATCTCCATGCCTGTT
GGTTTATGATGCCATAAAAGACAAGGGTCCTATCTTGCTTCAACTGTCTATATTTCCTGT
CTTGGTGCTAGATCGTTGGCTATGACGCGCCATCGACTTACAGAAATTTAGAGTCGTGGA
TTTTATGTAATCTTGTGGTTCTTCCGGCTCAGAGCTTTCAACTGAGCCTGAAGGCTACTT
ACTTTGTGGATGGCTAAACCTGGAAGTCTGAATCTAAATCTGTTACCCTGTGTTGCCCGC
TGGACAAAATTTAACATTGAAGTGCTTCCTTTTTTTTTTTTGAGGGAGCTTCCTTCTTTC
CGTTTCAGTGACAATTATAATGGCGTAACATGAAGTTTTATCTTTGCTCCTCAGCATACT
GCTGCTTCGTTGATATCATCTGAAGGTGTCTGAACCTGGTTCTTTTTAGGCATGGTTTTG
CTCTATTCATCAATGCGTTTTAAATAGTGAAATTGTTCCTCGTTATTCCCTCTCATCATT
GTTCATTGCTTATTGCTTGCCAGTTGTACATAAGTTTCGTTTGTCGTGGAAAAAGGTTGT
TTTACACTACTCCTTCCGTCACGGTTTAGAAGGCACAGTTNNNNNNNNNNNNNNNNNNNN
AATAGACAAGGTTTAAGGCACGAAAGCAATTACTCCTATTAATTAGTACTAGTAGTATTC
ATGCATGCGCCCTCCCAATTTGCTGCTCACGTATTAGTACTAGTATTTTCTCAGTTGATT
AGGCGCATTACCATTTACACCTGCTACATCTCACAACCAATCGGTGACTGCCTTGGTTCC
AGAGATTTTCCATGTGTGCTTTCTAAATCGTGACGGAGGAAGTAGAAAGAAATGAATTTC
CTTAATAGCTTCGGTCCAGTTGTAGCTTCAGTTCTTTACATGCACATGAGAGGTGTTTTC
TCATGCGGACGAGTAACCCATTTCCACACTTTCTATCTCTCCTATTCCTTGAATTTCATG
TACCTCTTGTGACCTTTCTTAGGCCTGGTTCGGTTTGTTGAAATTTGAAGGGGATTGAAA
GGGATTAAATCCCCTACAAAACAAAATTCACCTTAATCCCGTCTAATCCTCTCTAATCTT
CTTGTGGGAGGGATTAACCAAGCAAGCCCTTAGGCCTCGTTTGGTAGGAGGGGATTGAGG
TGGTTTTGAGGGGAGGAGATTTCAGGGTATTTGATGAATCCCCCTCTTTCACCCAATCCC
CTCAAATCCACTTGAAACCCCTCAAACCCCTCCAATCACAATCCTCTCTATAGGAATCAA
ACATTTGGTAGGCAGGGAATGCAATATTGTGAAACGTCTAAAAATGTAATCTTTTACCAA
GAAGAGTTTGCTAAAAATTATAAAGGTCTCCAAATAAAAATTTAAACTGCTACATGGGAT
AATTTTGTAGCAACAACACAATTTTGCATGAATTTCTATCGATATATCATCACATGCATG
GAGTATATCACAACGACAACATAAATTTTTCTAACATCATTACTTGGAATCAAATGCCAT
GTGTGATCTTTTCCAGCAACAAAATTTCACACAGCCATGGTCCAAATGAGAAATACAAGA
TGTTCGATCAACAAAAGTGAATTGTTCATCACAACATGAACACCTGTTTGATCGGCAAAT
GCCGTGTGACATGTTTGCGGGCGGCACTGTGTGAAGGAGACTTGTGGCAGCAAAGCATGG
ATGCCCGTCTTCCGCAAGATCATGTCCAACCGCTTTCATAAGATTGTACTTTGGAGACCC
CTTTGGATACATATCTGCATTCAACAAGGATTACATTGTTAGATGATGAAGACGACATAA
GTTAATTAATGCATATGTATATATGATTAATAAAGACACCACAATGTTGGTTATTCAGGA
TGATATGCCTACCACATTTGCATTGCGATTTCATCCCTGAAAGTGTTCCCTAAGCCGTTG
TCCCCATAGTTATTCTCATCATCATTTGGGAGATCAACAAAATCATTTGGCGCTATGTTA
TTGGGCTGGTTGTCAAGCCAAGTCTCGTCTCCATTATGCATCTTGATGATATTGTGAAGA
ACTGCAGCAGCAGCGGGAAGTTTCACTTGGTTCTCGATTGTATGTAGTGTGCCAACATGA
AGAATTGGGAACCGCTTCTTAAGAATTCCTAGGGACCTTTCCACATGGTTGCATAGAATA
GCATGCCGATGGTTGAACAATTCCACGTGGTTTTGTGGCCGAGCGTGTCCATGGCCAAAT
TCCTTCAAATGATATCGGACACCCCGATAAGGNNNNAGAAATGACTGAGTGTTTGCATAA
CCCCCATCAACTAGGTAAAACTTGCCTTCGGGTACTC