Contig Data
morexGenes
Links



Map Locations of contig_38171 (2905 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38171

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53236 1 890 bp MLOC_53236.1 Available Available LOC_Os01g64920.1, FRAME:-2, EVALUE:2e-25, 13101.m07004 protein nuclear matrix protein 1, putative, expressed





CDS Structure of MLOC_53236






Contig Sequence (2905 bp)

>contig_38171 2905 assembly3_WGSMorex_rbca.fasta
TTATTGCCTCTAGGGCATACTTCCAGTAGCGCTTGCGTCCAGCAAACTCTGTGCGGCACC
CGAACCCAGCGCGGCCTCTGAAACCCCCACCATCACCACGTCCGAAACCCATGGAAGCCA
TCTCCAGCAAGATCCAACAGTCAAATGCGCCGCAAAACATCGCCAAAGGTGTTGGGATTT
TTCGCCGGAGGGAGCAGTTTTGCGGCGGAGGTGGGTGGAGTAATTGCGAGGCGGGAACCC
TAAATTGCCCCGGAGTCCGCATATATGGAGGAAACGAGGGCGGTTAAGGGTCATCTGTTA
TTTCTTTTTATCGTCCTTGCTCTTTTGAACGAATCTATCCATGATGTTTTTTTACCTATC
TCGTAAACCATATGAAAAACGTAGTTTGTTGGACTTATACTGGATGTGCTAAAGATGCTG
TGAATCCAGGAACCAAACACCTCCTAAGTGAAACAGGAGTGATGCAGAGCGTCCGGTACA
AGGTTAAAGTCCGAGCTCTTTCAGAATGGTATCTTACTGATGGTTCGGGACTCTTCGGAA
GGGGGTTTTCTTCGCCTTCCACCTAAGCTAGAAAGGTCCAAAGCCAATCCTAGAAAACCG
TAAAACTTCATAAGATTCTTTTGTTCATATGCAGGTAATTCGCATCTTCACAGACATATC
CAAATTGTTAGGCCTTTCATGCGGGTAAGAATTTATCCGACAAGGAATTTCATTACAAAC
ACATACTCGTGAGATGGGAGTGGCGAAGCGGGATTGCTCGGTGGCAATTTTGCGGTAAAC
TAGTAACATTGCACGTGCAACGCACGTGTAACCGCAACATGAATTTTTCTCATTCATCCT
TGTTAGGAGGAATCTTATAGTCCTATAGTATGTCACATATCGAAGACAATCAAATGTATC
CATAGATAAAATATATAGTCATAGGTTCACTGAGTCTAGTGATAAATTTCATATCAAACA
CAAGAACATTAATCTTTGAAGCCCACAACTATATTGCTCAATCTAGTAGATTTGAGAATT
ATTTCCTCCAAGAGAACAATCCAATGCATGTGCTTACCTAGCCAGGGAAACGACTGCTTG
TTGGATTGACCTTGCCAGGAAAAGGGGGGGTTGGGGTCTGATTTCTTAGATTTGGGTGGT
GCATGTTCTTTTGAATTCAGTCAATAGTACCTTTTTGTTTGCATTGCAAACGGAGGGGAC
CTTTCATGCCACCGCACAAGTAGGTACATGTCCGACCCTATCCTCATCACCATCCGATAT
AAGCTGCTATCGATGTGAGTATGTGCACATCATGATGTGAATACATTTACTCCATTGCAT
GAGATAGTTAGTTAAAAAGATTGACAATTATATAAAGGTAGCATTTTTTCCATTGCTTGG
TCATATTTTTTCCAGAGCAGAAATATACAGAGAGATCGTATATGATGTTACAGTTGTTCT
ATCCATGGGCAGATCCAAATTAAAACTTGTAGCCTGACTATCCGAAGTTAATTTACTGTG
TATATTTAGCATCAGCGGCCATTCACTAAGATGGCATGGAGTGAGATTTCTAAGATAACC
TTCCACATGTATTCAAGGCTAGATTATTCACCACTAATCATTATGCTTAAAGTTGACGGC
ATATGTTTATTCAACAAAAGAGGAGCCTATGTAACTCTTGAGGACCTAAAAACAGTATGG
CATATTACACTTCTTCTGCAATGTGATAAGGAATCACCTCACATCGAATAAAATGTGTGT
CCAGTAGAGGAGCCAAGACTTTAGCCAGCTGAGGCACATACCCAAACATCTGCCCACAAT
CAGACCCTGCATAAAGCACCTATCCATGGTATTAATAAAAAAATTCAACATGAATGGGAT
GCCAACAGAAAATATAACTCATTCATAAAGTATGGAAACCTTGACAGCATGAGGGTCCTT
GGCATTCTGGGGGTCTCTTAAAATAGTAATGCTCATGCCTTCTTGCAGTTTAAAGTTTTC
ATGGAATCTCTCGCCCGCTATGACAGTTTCAACACCTAATGTGGTGCTAGAATCCGCGTT
TGGAGATGCATCGGTACTGGCAGAAGTTGTTCCTCCTGAAAGTGAGAAGGAAGAGGCCTT
CTCAACTGCATCGTCATTTTCAACGTTCTTCGTAATTGCCAAACCAGCATTTGAAGGTGT
ACATGTATTATGCATCTCGAAGATGCCAGGTGAACCATCCAGGCAACCAGTTAATAAGGC
GGTTGCGCTATTCTCCGAACTTCCGATGCCACTATTCATGGAGCAAAATTCTGTCAGTAC
ATACATCTCCATCCGTCAGTCCCTTGTTTTCTGCCTTGTGAACATTGGTCACTATGTCTG
GAGTAGGCTCAACTGTATTTTTTACTGAATCTGAAATCGAGAAAGCTGCTCTAGAACTTC
CATTTCGGTCCTCTCGTGAGGCATATATCTGCACAGTTCATGTGAAAAACGAATTCTTCA
GAACATTATAGCATTGTTAAGCATGGCAAATCTTCCTATGCATCCCATTGTTCACTGAAT
GTCACAAGTTACAACTGCAAAAGAATCAACAAGCACACACAAATACACGACCACACCGGC
AATGGGAACACAAGCTTTACTCGGCGCCTCAACTGAAACCAAAAGGCAAACAACTGAATC
ACTACAAGCATACACCCGTGTACCAGAGTTGAATCTTGGTATAAGATGGCCATAAAATCA
CAGCGTTTCACCCTGCTCCCGTGCCACGGAAGTTGAAAGGATGGCAAGGCTGTTGTTTAA
GAACGTGAGCACAGATTCACAGTCTGAAATGATTTTTGTGACGGATGAAGGCTCGCTTGA
ATTTGAAAGTGACCCAGCTGCCATTGTTGTATATGAATCTTGCAGGCTCCTCAAATTTTC
AAGGAACTGCACATCACAAATAAAA