Contig Data
morexGenes
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Map Locations of contig_38161 (6190 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_38161

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53227 1 306 bp MLOC_53227.1 Available Available None
MLOC_53226 1 1113 bp AK354043 Available Available None





CDS Structure of MLOC_53227






CDS Structure of MLOC_53226






Contig Sequence (6190 bp)

>contig_38161 6190 assembly3_WGSMorex_rbca.fasta
GTCACCCTGCCATCCTCCTGGGACGTCCATTGATTCACTTGTAACATCATTGTACTGGCC
TCTTAGGAGGATGTTCTCCCCCCTCTTTTCAATGCAATGAAACGCAAAGGCTTTTTGCGT
TTTCTCAAAAAAAACTGTTGTGTTTTATGTGATCTGTTCTTTTACATTGCCTATGAATTT
GTTATATTTTTTAAAGTGGCTGAGAAAATCAAGTAGTCGAGTTCTGGTATAGTAAATGAT
CATTTGATTTTCCGACTATAGCCCCTGATTTGATGTCAATTTACTTTGCTAGGAGTTGAA
TTTGAGTGGTCTTGGTGTGCCCAATGTACCCCCTGCAGCTTGGGAGACAAGTGATGTGGT
GAAACTTGATCTTTCTAAGAACTTGATAGAAGATCTGCCAAATGAGTTGTCCCTGTGCTC
ATCACTTCAAGTGAGTTGAAAACTCTTGTGTTGTCATTAATGATGTTTAACTTAATTGCA
TGGTCTTTATGTATATGAAGGTTTCAACTTAATTCATGTTCTTATCTTCCATTTCTTTTT
TCGCAGGCTTTGATTCTGTCTAATAACAAGATAAAAAAGTGGCCTGGCATGGTTGTTTCC
TCCCTTCCCAGTCTCACTTCCTTGAAGCTGGACAATAATCCTCTAGCAGCGGTAATATAA
TGATCTTGTCTTACTACGCTTACATTCCATCTTATTATTAACGAATAGATCTCCAATGTC
TATTTCTCTCTAATTTTGTTGAGAGTATCAGTCTTGCATAGTGCTTGTATTGAAACATGA
TCCCCTAAAGTGAAAATGAATGAGATAACCAATTTTAGAACTTGATCGACCTTTGTTGAA
CCTACAAGAGTTGTTGGCTAAATAATTAAAGCTGTTCTGGCCTTCTACTCGTGTCTCATG
TTATCAATCATTCTTCATTGCTTTGCGAAATTTCTTACATTATTTCTATGCAATACCCTT
CACTTAACTGGAATACAATGTCAAATATCCCTGTAATGGCTGATATTTTTTCTTGGGGCA
ATTGGCAATGACAAAACATCGATTTATTATGACTATAGATTGTCTAATAGAGCAAAATGG
ATAGACGAGTGAATATTAAGTTTGACATGAAAGAAATCTAAATGATGTTATACATCTCAT
TTTGCAGTCTATAACAGTTACAATTCTTCTTGCAGATATCGTCCACTGATGTCGAGTCTC
TATCAAAACTTGAAGTTCTTGATTTAAGTGGCAATGCATCCTCATTGACTGAACCTTCTG
TGATTTCTTCATTACCACAACTGCATGAACTCTATCTTAGGTTGGAAAACATGCAAAGCA
TTTAAGCTATAGAAACCATTCTTAGGAAACTTACTATCTTGTTATCTATGAACAGGCGAA
TGAAACTCCAGGGATTTCCTATTGGGCTCTTCCAGTTAAAACATCTACGGATTCTTAGCC
TCAGTCAGAATCATCTCACAACCATACCTGAGGTAACCATCAGGGTTTCAAGAAATCTGT
TATTTCTTTTCTAATTTTTACGAACAACACATGATATGCATTTCTGCACTTAAACAGGGT
ATCAAAGATTTTAGTGCTCTCGTCGAGCTTGATCTTTCAGACAACAATATAACAGCGCTC
CCAGCCGAGCTGGTAGGTTTTGGTTTCAATAACTTGTACACTTACAATTGCTTACAAGTC
AGAATAATGCGGTTATAGGTTTGCCATTTTTACATCTTATGCCTCACTCAAACTATCGGT
ATTTGTACAAAATAGCTGCTTGCAGAAATCCTTAAAGATGCCATCATGTCTAAATTTCAT
AACAAACAGTAGTCCCTACTCCTAAATTATCTATTTCTCCATCTCTCGCTGAAATGCTAT
AAACCTTTATTTGTTTTGGGATTTTATGAGCAGGGTCTGCTTGAGCCTAGCCTGCAAGTG
CTCAAACTTGACGGAAATCCCCTTAGGAGGTAAGCATCTATCCTCATGCTTTTTCTGTGA
TGGATCTATGATTGACACAAGATGTACGACTACATGACCTTGGCAGTCCTATTCACTCAG
TGACAACATATTATTGGTTCATAGTTGAACAACCTCGTTTTGCTTTCTTGTACAGCATAA
GGCGGACTGTTCTGGAGCGAGGAACGAAAGCTGTTCTCAGCTATCTCAAAGAAAAGCTTC
CATCCAACTGAATAATATCATCATATATTCTGGCTGGAGTTATTCCCTTGGTTTCCCCCC
TGCCGTGTTGAATAAGTTTCCTGTGGTTGAAGTGTACTGAATTGTCTTGTGTGTGCGCAC
GCAAGAGAAAGATGGGTTGCCATATGCATATTACAATATTTATTAGGTTGACACAAGATT
ATGTGATTTGTATTTTATAATTCGATGGTGTTGGTTGGCTGAAATATCTAGAGATTTTCC
TTCTGTTGTGTTAAAACTATATTGCTTTGCTGTTGATCATTCGGAGAAGTTCTCAATGTA
CACGATCACAAATACAATATTGATTTCAGAGTGGTAGTAGGTCAGACTTTTGAATCATCT
GAAAGGTAAGTGAAACAAAAGATGAACCCGAACCAAGTTACATGAGCAAAATGTTTTACT
CTTCGTTGTTGGGTGACGTTCTCCTTTTATCGCAGTGGTTGTTCTCCTGCTGGTGCGACC
TTCTTCCTCGCAGCCATCTTTTTCCTCTGCCACCGCAGCCATCTGTTCTACTGCCGCCAG
GAGCTGTTTCTCAGCCTCTTCTGGTGATAGACTCGTCCAACTTTGCTAATCGGTCATTTG
CCTTCTCCCCTGCCGCCGCTGCGCGGTCCATAGCGGATCGGTAGGAATCCAACCAGCCAC
TCCATCCGTTCTTAAATATTTATCTTTTTAGACACAATTTAAAATGTAAGTTCATCCATT
TTGCATTGCTCCGTATGTAGTCCGTAGTTGAATCTTTGAAAAGACAAATATTTAGAAACG
GAGGGAGTACTTCGCTAGAGCTTTTCCCCCCTCTCGCATGCAGCGAGGGTTTGCTCTCAT
TGATTGATTCGGATGCGCACTTCTCGTTGGGAGCTACACAGATTGACGAGAGAAAGCTTT
TATAAACATAAGCTTTGTTACAAAATAAATAAATGAATCGACAACACAACCTTTATAACA
AATGTCTTTCCGCAACATGATTTCTGTTGGCAAAAAATACTGCAACAAGACCTATTTCGC
AAGAGTGGCAAAAGTGTAGAACGATGCTCGTCGCTAGACCGTGCCAGATCTGACGACTAG
CAAGGCGGTGGATTTTTTCTTTTCGTTCAACAAGATCCAGGGCTGATGTGTAGCACGCCC
AAAAGAAAGAAAACCCTAAGGTTTCATCTTTTGTTCAGTTTTCTCAGTGCCACCACTGCA
CCTCTCCTCAGGCTCCCACCACGCCGGAGCTTCTTCGCTGGCTCCGTTTTCCTCAAGGTC
GTCAACGTCCAGGATTACAGCTCCTTGTCATTGGTGTCCTGACCTCATCGGCCAGCACGC
GTACAACCGTGTGACTTCATCACTCAATTGATTCACGAGACGATAGTCGAACGCGTGGTT
TGGGTTTTTAATATAGGGAGTTGGAGGAGGTCACGACAGCTTGGTCGACGAGTCTGTATC
GGGCATGAACATGTAATGCCTTCGGTGGGCTGATGCAGAATGCCATAGTTGTGTTGGTAG
TGATGGAGAAGATCAGGGTCCACGCGTGATTGACCCAGATAAACGTAAAATGAAGACGTA
TACCTAGATGAACGATGAAACCAGACGTAGGAACAATGACACGACCGGCATGTCCTTCGA
CATCTCCGGCTGCAGCACCTCCTTCGACGCCACGACCGGCATGGACGACGACAACGCCGC
CGACATGGAGTCCGGCAGTAACGACGACGACCACCACCGCCGGTACCTTTCCCCGTCGCC
CCCACTGCCCACCGGGACAAAGAGGAAGAAGCCCTTGCCGGCCACGGCCTCGCCCGCCGC
CGGCTCCTGCGGACGGTCGTCGTCGGACGATGGGATGACGCTCCGGCTCGGCATCAAGCA
GCCGTTCCATCTGTAGTACATGGAGCTGACCAAAACCTTCTGTGCCCGCGTGGGATGGGC
CGAGTCGTGCACCGCCGAGCTCAGCGTGGCCGGCCGCGGCGACCGGCGATGGGAGGTGTC
CGTCAGGGTCGGCAGCAAGGGCGGCATGATCATGGCTGGATGGGAGGGCTTCGCGTGGGA
CAACGGCCTCAGGATCTCCGACGTCTGCCTCTTCACGCCGCTAGCAGCTGACACCGGTGA
TCACGTGGTGCAAGTCCAAGTGCTCAGGGACGACAAAGTAGTTGCCGCGTCCGGTAAACC
AGTTGCCGGGAAGAAGTTCAAGAATGGACCTAAGCCTGAGACTAAATGCTATTATTGCAA
GAAAAACGGTCACTGGAAGCGGAATTGCCNNAAGTACTTAGCGGATAAAAAGGCCGGCAA
CGTCAAAGGTATANNNNNNNNNNATGTTATTAATGTGTACCTTAACAGCGCTCGTAGTAG
CTCATAGGTATTTGATATCGATGTGGTTGCTCACATTTGTAACTCAAANNAGGAGCTGCG
GAATAAGCGGAGACTATCAAAGGACGAGGCGACGATGCGCGTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTACCTCTACATCTATCTTCGGGATTAATTTAAACCTC
AATAATTGTTATTTAGTACCAGCTTTGAGCATAAACATTGTATCGGGATCTCGTTTGATG
CGAGATGACTACTCATTTAAATCTGAGTATAATTGTTGTTCTATTTATATGAGAGATATG
TTTTAGGAAAACACTTTTATTCAGAAGTCTGATAGAAAACTTCTCTCAGACGTAACCTGC
ACAGTAACAACCCCATGACGTAATGTCCGAGTTAATCTCGCTGCCCAATTCATCCCGTAT
GGCGTACCCTGCACCAATCTCGCCGAGCTCCATCACCGCGGCGTGGCTACCTCCACCACC
AACCTGGTCCGCACCAACAGCTCTGTAACGACTAGCTGCTCCACGTCGCCGCACATCGGT
GTTCCGTCCCAGTCTGCTCGATTGAACCCTCCTGTCACCGGCGACCGCGTTACCCACTAG
ACCCCGTCCTGTCGCCATTCCTCTCATCATGCTGTGCTGGTGCGCCGTTTCGGCTTGGCA
AAGAAGTCTGCAGCCGCATCCCAGGCTTCGTCCCCAGGTATGCACTCACCCAAAGTAGGG
TTTGATTCATTTTAGGTATAATTCATTTTTAGTCACTTGATTTGATTTGCGTTCTTTGTA
TGCAGTGATGATTTTTATCGAGTGCATCTATTTTGTACTCGATGTGTTTCTTGCCTCATA
CGGTGGCGAGTCTTTTTCGCCATGACGCGGTAGTGCATACGAACCACATTGCCAGCTATG
CACTACCACATTGCCAGCTATGATATGCAGGCTGGTCGATGGAAGCGGAAGAGGAAGCAC
ACAACTGCTTTGATAGTTTTTGTCGAGTGCATCTATTTTATACTCGATGTGTTTCTTGCC
TCATACAGCGGCGAGTCTTTTTCACCATGACGCGGTAGTGCATACCAACCACATTGTCAG
GTATGATCTGCAGGCGGGTCAATGAAAGCGGAAGAGGAAGCACACGTCGAAGTCAAGCGC
ATCGTACTGGTTGATGGTGCCGATGATGGAAGCAATCGTACTGGTTGATGGTGCCGATGA
CGGAAGCAACTTGTAGCCTGCAACCGAGCATTTGACCTGACAAATAGGTAGCCTGCAACC
GACTATTTGACCTGACAAATAGGGCTCGCCACCGTATTGATTACGGTAAAACAATAGTCA
AATATATTATTGACAAAAATGGTCAAAGGCGATTTGAAGATTTGGAAAAAAGATAAGATG
GAATTATTTTTCATTACACATGCAGGTACACTGAGGAGCTAGCACACACAACACAAACAC
GTGCGGGCCCTAAACCAAGAGGGAGAAACACTACTCAGAGCAACATGCATGATCGAGCTT
GACTAGCTAATTACGTACTACCAGCTAATTAAGCTAGCATGCATGCATGCATGCTTATTT
CAACATCACATGATCAACACGTACGTCGATACACAGCGATCTACTCCATCGGTCACGGTC
ACGGATGGATGCAGCCACCGCCGCCGTGACCGATGCCACCACCGAGCCCGCCGCCTCCAC
CGCCGAGGCC