morexGenes - Barley RNA-seq Database

Contig contig_38074
Source Contig contig_38074
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_38074 (6412 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_38074

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_53122	3	1862 bp	AK376379	Available	Available	None
MLOC_53121	1	199 bp	None	Available	Available	None
CDS Structure of MLOC_53122

CDS Structure of MLOC_53121

Contig Sequence (6412 bp)

>contig_38074 6412 assembly3_WGSMorex_rbca.fasta
CCCCCGCCCCCCCCGCCCTTGCCTTGGCGGCGGCTCGCCCCGCCCCACCGGAGCACGCCG
GCCGCGGCGACCATCCGCAGCGACTTGCCGTGCGGCCTCCCGCGCCCGCCCTTGGTGTGC
TTCACGACGTGCGCGCCCGCCAGCACCAGCTGCCGGCCCAGCTCGTCCATGATCACGTCC
TCGGCCTTGTTGAAGGCCGCAGTGGCAAGCGCCGACCGTGCGAGGGAGAGCGCCGTCTCA
CCCCGCGGGGTCTGGATGTCGCACCGGGCGCCGTGGGAGATCAGTAGCTCGCACACGGTC
GCGTGGCCTTCTCTTGCGGCCAGCATGAGCGGGGTGTATCCATCGCCGTCCGGGATGTTA
ACGTCGTAGCCCGTGCTCGCCAGGTGATGCACGGCCGCGCTGTCGCCGCGCCGGGACGCG
CAGTGCAGAGCGTAGAACCCGCCGGCCGGCATGCCCTTCTCCAGCGCGAAGTCGAGCATG
ACCTGCTCGAAGAGGTCCCTCTTCTTGCTCTGCTGCGCGAGCCCAATGGCCGTCTCGCCA
CGCTTGTTGCACAGCTTCACGTTGGCGCCGGCGAAGACGAGGGCGCGGAAGGCGTCAACA
TTGCCTTCCTTGGCGGCGGCCATTATGGGCGAGCACCCGTCGGCGTCCTGCTCGTCCACG
TCCACGCCCGGCTGGGCGAGCAGCACCTCCAGCGCAGCGGCATCACCGCATCGCGCCGTG
AACAGCATGGGCGAGAACACGTGCCGATCGCTGGACAGAGGGATGGTCCCGGACCGAATC
GCGCCAAGAACGGCGCGTTCAAAGCCCGCCTTCCAGCCACCGGAAGAGGCGACGGATGCC
GCCGACTCGCCTGCCAAGTTCAACAGCGCAACGTCTGCTCCGGCTGACACGAGAACCCTG
ACGCAGTCCTCTTCCTTGTGGCGCGCGGCCAGGATGACGGCGACATCGCCAGCCTCCGCC
CTCGCGTTGACGTCGCAGCCCTTGTCCATGAGCGTCTGCAGGATCTCCGGCTGGCCGAGG
CGCGCGGCCAAGTGAACAGGCCTGGACCTGCCGCTCCGGGAGGTCCTCACGGCAGCTTCG
CATTCCGCACCACAACCCAGCAGCGTCTCGACGGCGCCGACGCTCCCGCAGAGGATGGCG
TGGTGGAGCAGCGTCCGGCCATGGTGCGTGGCGCCCAACGAGTACCCGTTCTGCAGGAGC
ATGCGCAGGACGGAGCCGGTGGACTCGTAGTACTCCACGGCGCACCAGGCCGCATCGTAT
GGCTCCGCTAGCCCGGCGCCGACGCGCAGCTCTTCACCGGTGGCCGCGTCCCAGGACCAC
GCTCCTAGCCTCGCCTTGGTGTCCCTCTTCACACCAGCCTGCACAAGAGGAGCAAAATGA
GCGTCAAAAAGACTCAAATGCGTCGATCGCGAAAAGAGGTTGGCGATGCGATGGTGCACA
CCTGAAGTAGCTGACGAACCACGGCGACTTGCCGGCTCACGATCGCGGCGAAGAGCGCTG
TGCAGTCGACATTGAGATGCAGTGATGGCTTGAGAGAACGCAGAAGCACCCGGGAGGTCG
CGTTTGGATCAGCCCCGCACTGCAAAGGAGAGAATCAGATGATATTAGATGCCGCGTAGG
ATATAACACATAAAGAATCCATGCGTGCAAATTTTGAGAAATTATTTTAATGTCGAACAA
CTTATTTAAATTTGTTTTGTAAAACAAAATCGGCAAAAAAATTTGGGTAAGATCCGCCGA
AGCGGGTAGCCTTAACCGCAGTGTGCTAGAGGAAAGTCCGAAGACCGTTCCCGTCCCTGT
CAGGGGAGATGCCAACCGTCTCTCCTTTTTACGAACACAGTGGTGTGAAGTACACCTCGC
CTTATAAACCGGTCACAGCTTCCCTCAGCCAGCGAGGTGGGACTAAAGACTAGGACACTC
TCTGCTGCGGCACACCACGCGTACCCCTTTGCGCCCTAGGACACAAAACTCGAGCCCATG
AGAAGTTAACCTCGCCAGCAGTTCACGCCCAAGCCCATATGTTGGTGCTAAACCGTTTCG
CCCGAAGCCCATGTAATACTAGGGCCTAAGTACTCAAAGCTGCAGCTAAAAGCCCAGAAG
AATAGGAGGAGAAATGTAACATGGGCATACCTTGACGAGCGTGTCGACCACGTCGACGAA
GCCGCGGGTGGCCGCAGACACGAGCGCGTGCACGGCGACGCGCGGGCGGACGAGGTCGGA
GCGCATGAAGATGGCCGCCAGGGCAGCCTGCCCCTGCAGCGCAGCCTCCACGATGGCCTC
CTCGCAGGCCGGCTGCGACGCACCGGCGCGCACCAGCAGCTCCGCCACCTCCGCGCGCCC
TTCCCGCGCCGCTGCCGTCGCCGGGTACCCCCGGAACACCTTCCCGTTCACGTCCGCTCC
CTTTGCCTGCACGCCACACGTGAACCAACCATCAGAAGCGTGTAAAGTAATTACAGTAGA
ACGCAGACCTGCAACTCCTAACAATGATGAGGATGTTTACGTTCACGGATTGAGCAGCTA
AACAATTCCCTCAAGGCAGGTTGAATTCCTGAAACAAAATGTGCATGAGGCCTACTTCTA
ATTTCGCTTTCACTGCACGGAAGGTAAAGATAAAGATGGTCCATCCCACCCCAGCGTACT
ACTAGAACAGGGGCGAGGCCAATGACCATCGGGACTCGGAACCATAGCTGGCCGGGTAGC
AAATGTCGCTGTTGCTGGTACTATGTCCGGTCAGGTCGGTGATGTGGTGACCAATACATC
GACTGCTTGCTGGCCGGTGAGCCTGTGCTGTGCTGTGCAGTGCAGGTACTGTTGCATTGG
CACTATGCCAGGATTCATTTACGCAGGAGAGAACAGAAGGGGCCTCCTACTGGAAGAGGG
AATCTGGTCAAAATTCTGCAGGTGATGGCATCCCTATCCATCCATCGAGATTCGAGATAT
TGCCTCAAATCTTTATGTTCCTGCCTTCATTACCTCTGTGTCAGCTCAACGTCGCTGCAT
ATAGCAGCCGTAGCTTTCAAGATGGCAACACCTACCGAAAATATATCCAAGCTTGCACAT
TTGCCCTTGTCAAATGTTGTTCAATTACAGAAAAACAGTCGTGTTTCTCATTTCCTACTG
CAAATCGGACTGAATGAATGCATGAACAACGGTTCCGTTGAGCAATAAAAGATGCTGCGG
CCATCGATGTTAAGCATCTAGTAATAGTCACATCAGATCCCCAGTTTAACCATCCACTCA
CACTGTAACAGGACCTCCCTGTATCAACCTCAAGGAGACCTAGCCTATATTCCAGCGCTG
TACAATAAATACATAGCACTGGTGCACTGAGCCGAGGTGATGTTGTTAACAGTGCATGGT
CTCCCCATGTCACCATCAATGGCGCGCAGGCCACCACCGGATACACGAGGAGCGGCAGGC
GCTGAGGGCAGGACAGGGAAGGACGGACGTGCCCGCGGCTGTGCATGGGCGCCAAGTGCG
CGTAGCTGGCCAGCCATGAGTGATGAGGGGGGAGGAGCAGCAGGGGGTACAGCTGGCCGG
TGGCAGAGGGGGCAGGCCATGGCTACGAGACAAGGAACGCGACAGGGTACGTGGGTGAGC
TCTCCGTACCCAATACCTCCTCTCCCCCGTCGTGCCGGCTCAGGGGTGCCATGCAGAGGC
CGAGCGAGCGATGCGATGCGATCGGGCATGTGATTGTGATGCATCGCACTGGGACGGACA
TGCGTCGGTGTCTTTGATGGCGCTTCCACGGAGGACGGAGAAGGTTGGCCGTCCTTGGCC
TACTTGCCGGCTTGGGGCTCAGCATCTCAATCTCAAGGGGCTAGGTTTCATGGCGTGATC
AAATACAGCTGGGGCGGTTTGGACGTATTGGATCAGCTAGCGTCCGGCATGTGCGGACGG
CAGATGCGGACCGTGTGGTTCCGCTGAGCGAGCAGTGCCGGCCCGGATGAGCTCTAGCAG
GTTTTGGGATCGGCTTCACGCTTACAAAACGCACGAGGTTCAGCCCTAAATTGTCTTGAT
CCGGAAGACCCAGCAGAGCAGAGTTGAGATGTGTTGCCTGCTCGGCCGCATCCCTTTTCC
ATGCTAGCGAGCCAAACGAAGAGCTCCAAACAAGCAAGATGCTGCAGCAAAGCATGCGCC
TCTGGGACGAGGGCCACGCCGGCCATGGGACTCCTGTCCCTGGCGAATGGCGATGGCATT
TATTGGCCTTGGAAGGGATCAGGGGAGAGTGCCGGTACCCATGCGCCGTGCGCTTTGCCT
GCAAGGCAAAGACTACTGGTAGTAGGAGTACATGGCATGGCCGGCCGGGTGCGTGCTCCT
GCTCGTGCTCGGCCCCGTCCATTGCAACCTACTCCCCTGTCAATCCCATTCAATGGAGTT
GGCATAGCGCATCGGGGCCGCCCCATGACACCGGCGGATCAACCGGCCGGACACTGCAAG
CCACGTAGATAGATCATGGATCTCACCTCGCCTCCACCTCCACCACCTGTTGCGAGACAC
ACACGCCCTTAACCTCGTAGAGCAGAACGATCTTGCATGATTACGCGTGACAGGCACGTG
AGGCCGTGATCAGTGATCAGGCCCAGGTGGCAACTACCAAAGGCCAAGGCATAGTACCAT
GGGATCCAACAAATCTGAGGATTACTGGAGTGTGCACTACACAAGACAAAGACACGGACG
TAGGATGAACTGTGCTGGGACTCTGGGGGTCGAGGGGGACGGGACCCTGACCCTGAGTGA
GGGGGTCACGTGATACCAACCCCGACCGCGCTCACGAGGGGGGAATATATTGGTTTCGGC
CAAAGCGTTGAGGTTCAGAGGTTGAGCTCTTCCCTTTGCCTGTTTTGTAGAGTGGTAAAC
TTGATTAGCAGCACCACTGGACTGGAGTACCATCAACCGCTGGGCACCTGTGCTTTCGAC
TACTACTTACCTGATTCGTTATATTATCGGCAGCAGTAAACAAAGCACGGATGGGTCAGG
GTTAAAGTCAAACCCATCTACCGTTGTCCCCCCAATTCGTCGCTAAAATACTCCATTACA
TCTCTCCCCAACGCAGCAGCGTGCGTAGCCTTGTGGACCAACCTCAGTTTTACTACTACA
AAAAATGTACGTAGGAAATAATTTGTTTTGTAGGCAATGTACTGTACAGTAACATGTCAG
GACGTATGTATGTATGTATATACGGTATGTCTAGACCTCGATCGATGCACATATATACTG
TACACACACACACACGTATATCTAGGGCATGCTCCTACTAGAAGGCGTGTCCAGGAAGCT
TCTCTGCGTAAGCTCCATGGCCGGCTCCATGCCCCCATCCGTTTCACGACTTGTATCATG
GCAAGACAACAAAATGTGTCCGTACACGCATTAAAGAGGAACTGCAAACGCAAAGCACAG
CATGGTCCCCATCGCAGCCATGCGGGTTGGTACTACTACTTGGTAGCCCCTCTTCGAGAA
ACTAATTGCAGAGAAATGGGTTGGAGCTCCTCAAGTGAAGACTGGCGAGGGAACACATGA
TTGGGGTCTGCAAAATATCTCGTAATGAATGTTCTTTATGTCTAATATAACTCCATTTTG
GAGGGTAGGAAGTGATTAGTAGGAGGGGCCAGGCCGAGCGCGTAAATGAGATTTGAGAGG
GGGGGCTGGCATGCGTGTCTAAACCTACACGAAAATGGGATTTGTCCTGGCGCGTGCATT
TATATAGTAGACTGAACTATGATGAGCTCAAAGCTTTTTCATTTGGAATGGAACGGAAGT
AGATGGCCAACCTTCTACTCCTATCTATCCATCAGGTACACTGAACTATGCGGGAGTACT
ACATGGATGAGATACAGACAGTGTGTTGTACTTGTAGTACATCCGTGAGTTGCCAGCGCC
CGCTGAGACCATTCGAAAATGTTTTTTGAAAGTCTTCGCCGACTCGGTAAAGATAAAAGC
GCAGCTAAGCTAGTCCGGCCTACGCCCTATGGCACTTCAAATTTTGAGCGGCGCACGCTC
TCCATGTTTCCTTTCCTAGACTTATTTCTTCCAAGGTGAAAAATGTGTGTTTGGGTGTTC
GATTGTACTAGTACTCTACAAATTATGGATGAAACGCCGGTCATAATAAGCCAAAACGGA
GCTCGCATTCCTGGCTAAACGCATCAAAACCGACGGAAAAGCAGCATGGCCGTGCTCTCC
AAACCGAAAAGCAGACGGGAAACGGCAGCAGAGCAAGTCCCAAAAACGACGAGAGCAGGG
GAGGGAGGAGCCAAGCACTCACGAGCAGCGCGCGGACGAGCGCGACGTCCCCGTTGCCGG
CGGCGAGGAAGAGCGGCGAGACGTCGGCGCGGATCTCCTCCCGCGACGCGCGCAGCTCGG
CGGCGGCGCCCTCCCGCAGCGCCGCCTCCGCCACCCGGCGCGCGTCGAGCCA