| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_38036
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_53079 |
4 |
947 bp |
AK365640 |
Available |
Available |
None |
| MLOC_53078 |
1 |
541 bp |
MLOC_53078.1 |
Available |
Available |
LOC_Os09g39670.1, FRAME:+1, EVALUE:9e-13, 13109.m03985 protein oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed |
| MLOC_53116 |
8 |
2947 bp |
MLOC_53116.5 |
Available |
Available |
LOC_Os12g04260.1, FRAME:+1, EVALUE:0.0, 13112.m00405 protein astaxanthin synthase KC28, putative |
| MLOC_53077 |
2 |
2210 bp |
MLOC_53077.1 |
Available |
Available |
LOC_Os09g39660.2, FRAME:+3, EVALUE:0.0, 13109.m03984 protein ZOS9-21 - C2H2 zinc finger protein, expressed |
| MLOC_53082 |
5 |
2067 bp |
MLOC_53082.2 |
Available |
Available |
LOC_Os04g43690.1, FRAME:+2, EVALUE:0.0, 13104.m04343 protein DUF647 domain containing protein, putative, expressed |
CDS Structure of MLOC_53079
CDS Structure of MLOC_53078
CDS Structure of MLOC_53116
CDS Structure of MLOC_53077
CDS Structure of MLOC_53082
Contig Sequence (9693 bp)
>contig_38036 9693 assembly3_WGSMorex_rbca.fasta
TTTGATGCTCCATAAACCTTGTGCACCGCTATCGATACGTCACAAGAACTCGTTGTTTTT
GTCGTTTCNNNNNNNNNNCGTGGGCTATAGCGCATTGTTTTGGAGTCCCGAGTTAATTTT
TGATGCTACATGAACCGTGTGAACGACTATCAAGATGTCTTTTTGTTTTTGTCGTTTCTT
GCTAGTTTCATGGTCTATAGCGCACTATTTTGGGGTCCCGGGTCAATTTTTGATGCACCA
TGAACCCTGTATACGACTATCGAGTCGTCGCAAAAACTCGTTGTTCTTTCGTTTTTCGCC
AGTTTCATGGGCTATAGCACACTGTTTTGGGGTCCCGGGTCAATTTATGATGCTCCATGA
ACCTTGTGCACCGCTATCGATACGTCGCAAAAACTCATTGTTTTTGTCGTTCGGGCGAGT
TTCGTGGGCTATAAGCGCATTGTTTTGGAGTCCCGAGTTGATTTTTGATGCTTAGTTAAT
CTTGTGCACGGCTACCGAAGTTAATCTTGTGCACGGCTACCGAGGTTAATCTTGTGCACG
GCTACCGAGACGTCGGCACGGCTACCGAGACGTCGCAAAAACTCGTTGTTTTTGTCGTTT
CGGACGAGTTTCGTGGGCTATAAGCGCATTGTTTTGGAGTCCCGAGTTGATTTTTGACGC
TCAGTTAATCTTGTGCACGGCTACCGAGATGTTGCAAAAACTCGTTGTTTNNNNNNNNNN
NNNNNNNNTTCATGGGCTATAGCGCACTATTTTGATGTACAAGGTCGATTTTTGATGCAC
CATGAACCCAGTGCACGGCTATCGAGACGTTGCAAAAAAACTCTTTTTTTATCTTTTTTT
CCAGTTTCATGGTCTATAGCGCACTGTTTTGGGGTTCCGGTCGATTTTTGATGCTCCATG
AAGCTTCTGCACCGCTATCGAGACGTCGCAAAANCTCGTTGTTTTTGTCGTTTCGGACGA
GTTTCGTGGGCTATAGCGCAGGCTTGATCTCCTTACTCCAAGGATCACATTACATAGGAT
GAAATGATATATGTATGCAGACCAGAGTATTTGAAAGAAAAGAAAAAGATCAGTAGAATC
TGTATTCCCGACATTTACTTTTGAACCTCGCGCCAGCTGTAGCTCCAAAAACGAACAAAC
TAAAAACAAAGAAAATCAGCACAATGCCTCAAACATCGCTCACACTTTTGTTTCGATTTT
GAAAGAGTCGACGATTGTATGTAGCCTGTCCTTCATCTTGTCCCATCTCCTCTCGTTTGC
ACCCGTTGCCAACGTGTAAAATTTGCCTACAACATCCCATGCACAATGAGGAGATGGTAT
ATGAGTGAGCACCGACCAGTGGCATCACTAAACACGCATATGAAATACTAGACAATACTT
CTTCCGTTCCTAAATATAAGTTTTTTTAAAGGTTTCACTAGGGACTACATACAAACGTAT
ATAGACATACTTTAAAGTGTAGATTTATTTATTTTGCTTCGTATGTAATCCTCTAATGAA
ATTTCTAAAAAGACTTATATTTAGGAATGGAGGGAGTACAGGCTAGAGAGCATAAATCGT
GTAAGAGAAGCCGATTGAAGTTCACAACTAACATGGCATCTTATCGAGAGAAAAATGATG
ATGAAAGATAGGAGTTAATACCATTTGCTATGGTAATTGTACCAAGCGCGTGTCTAGTGA
AATTTGGAGCCTGAGCCGTGAACTCGAAAGTGTAATAAGCTCTTCCATCGATATCGGTCT
GGACAATGAAAATGCACCTTATGAGTTTAACAACAAGCGAATAACATAAAAGTGATGCAC
AAAAGAATATCATATGACATTTGATGAAAAAAGAACTATTTGATACTACTACCCAAACCA
AAAAGTATTAGACAATTTGTGTGAAGGCTCGATATATCAATGTTACAATGAAAACTCACG
TTGCTACGGGTAACGTTTTTTTTTTTGAAAAAGGAGGAACCGAGCCCCCGACCTTTGCAT
CAATCGATGCATGCAGCCATCTTATTAGAATAAGTTCAAAACAAAGCGGTAGATCCATTC
CCCAGGTAACATGCTAGGATGATACACGAGGTTCCTCGAAAACGATAACAAATACTATGA
CAAACAACAAGAGATGCATATAACACATATCAAGTAAGAGAAAGAACACTTTATCCCTAG
ACAAGTGCTGGTGACATTTACATTACAATCAGCATATATATAAGTAATGCATAATGCACA
CACGCACCTCTTTCGCCTCAATCAACTTGGTCTTCTGCGTGGGCGGAGATAGGACTTTCC
GCACCAGTGCCTCGGCGACCTTAAGAAAACAACACATCATACATAGCAGATCGGATTTAT
ATTCTGAGCAAACCGCACCGTGTAGACCGGGTTCGATATATCTGAAAAGGCATATGATCG
AGTGGAGTGGCACGGAGGAAGGACCTGGTCGGGCGGGCCGAGGTCGCGGATGTCTTCCTT
GGTGGTGGGGATCATGTTGATGCTGACGCTCTCAAGCGGCTCGATCACGTCCTTGTACAC
CTTGTCCTGCCCTTGGACAGACACCTCCTGTTCATTCAGCATCAACCTTGACCTTGTTAT
GTGACCATCACCAAGTCCAAGTGTATGTGTATGCATGCCATGCCATCCGAATGGAGCAGC
GCAGAGGAGAGGAGATGATCAATTGAATGGAGTACCGTACCTGCCATCCGAATGGGTAGA
CGAAGGAGTAGCCGGCCTTCCTGTCGATGACCGGCATGAACTTGCCGTCCGCCGCCGCCA
CTGCGCACGATCGATGACCAGAATCGAGCTCAGACTACACATACGTACTAGCTACTACTG
TCCTGCGTCGAAGAAGAAAGGACTCACATGCCGCCGGAGCGGGCCGGGAGACGAGCGCCG
CGGCGGCCACGGCAGCCCCCGCCACGAGCACCTGCCGCCGCGGGGAAGGCGAGCTCTCCA
CCGCAGCAGCTTCACCTGCAGGCACGACACGGCACGGGGAGGAATTGAGACGAAGCGCCA
ATCAGGCTAGCCAGAGCAGAGCACACGTAGCGTAGGTACAAAAGCCAGACGGACGGACCT
TTGGGTGGCGCCATGGCCCTGACGGAGAGCACCCTCCGCGTGGGCGTCTTTGCGGTCGGG
GAAGGGAGGCCATGGCCGTGGAGGGATAAGGAGGTCGCGGTGGCCATGGCTGTGGCTAGC
TGGGAGTGCGAGGAGCGACGAGCTCCTCTGCTCCTATCTTCTTCTCTTCTTCCATTCCGT
GGCCACCGATCCATTCGCCGCCTTGCGTGTGCTCCCACCGTTGGATCAGCCCAAACTCAA
TCCGACGGACCACCAACAATTACATTCCTCCACTGGTTTTATTTGCGCTAAGAGCATCTC
TAGCACACCCCCGTATACTCTGTCCTGTAAAAATTGATTTAAAAGATAACGAAAAATGTT
TTTTTTACATTTTTACTACATGACTTTTATTCCGGCAGAACAGATTCTATAAAATATTTT
ATGGTTTTCATAAAAATGCAAAAAACCACCTAAAAGTGTCCCTTAAATTACAAATTGAAT
CTTCGCATCTTGTCCGTGACAGGGCGTTGTGGAGCAAGACAAGGAAGGCAAACAAAAACT
ATGCAAAATGTTGCCGTCACATGATCAATCTCCTCTCTTTGTTGCCTCCTGTGTTGTCAC
TTCAGCGCGCAGGGTGAATATAAAAAAAGTATCGACTTTTCTTGTTTGTGTAGCAGGTTT
TGGTCACGCGGCAACGACGACCCTTTGACGGTGTCATCTCGAGGGCGCTTGTTGGGGCAT
TGTTGAAGAGCATGCGAGTTTTGGCACCCCAGTGTTATCCACGAATTACGGTCAATTATC
TATGTTGAGTGTCGGCGTGACTCCATATACATTTGTTGGCGGTAATATCATCTTCTTCAA
TGACCTCTTCTTTCGAGCCTCCACACGCAAGATAATCGGGTTGTCACGCTGCAAATGAAA
GTGAGGTTAAGTGAGGCTAAGCAGTCCATCCCACTTAAACTGCTTTAGTGGGCTGTCGTT
GTATATAAGCAATGTACATTAAGTGGGATAGCTATATTATCCCATTGGGAACCACTTAAC
CCACCAGCACTTTCTCTTTCGTGGACAAGGGAACAAAGGATGCGATGCGACGCACTGAAC
ACGGTCCCACCGCCGTCAGTGAGGGATGCACACCTCCACGCTTGATGTCCACCCCTGTCG
CGTCCCCTCTTATTCCATCATTTGCAAATGCATTTGTTAAAAGGGATCCAATTATTTCTC
AGATAATCTATGCTAGTTTTTATGGTATGCTTTGTGATGGGGCTCCCACCCACATTTCCA
TCAGCATCCCGGTCGATTTGATCCGGCGATACTAGCACGAATACTTTGCCTCCGTCCAAA
TTGGAATGACCCTCCGTCGACACTGATGCTTGTCACGATTGATAATGCCCGCCTTGCTCG
ACGGTCTGCTAGCACGGACAAAAATCTAGTTACTGTTTAGCTACGAATTTTATAGCATAC
TTTGCAATCATATTATCAATTTTATTATAATATGCCACCGTGTGTATACTTGCATGTATC
CCGTTTTCTACTCATTTCGTTCCTAAATATAAGTCTTTAAAGAAATTTTATTAAGAGACT
ACATACAAATCAAAATAAATGAATCTACATTCTAAAATATGCCTATATATATATTCGTAT
GTAATGCCTAGTACAACCTTTAAAGACTTATATTTAGAAACGGTGGAGTATTTGATTTGA
TCTATAATAATATGAACCAGACATTCATTCATCAGTATCAGTAGTAGAAATATAAAAAAA
AAAAAACTCCTCCTTTTCTTCGAGATTAGTGAAAAAAAACTCCTCCTTTGTGCTCTGTCC
TGTCGTGTCTATCTCCCTCTTCCCCTCCCCGATCTCCCACGCGCGTCCGCCTCGCCGCCG
GCCCGCCCAGATGGCCGCGTCTGCCTCCGCGTCCGGGTCCGGGGGGCAGATCCAACCGCT
CAAGATCCCGGACGCCGTCGTCGCGCTCGCCCAGGCCGCCGCCAAGGCCAACAACAGCAG
CAACAGCGCCGCCGCTGACGCCACCGACAAATGTACGTGTCTCATTCACAGAGCAGCCCG
CCGGTGCCGTTTCCGGCTCCAGCCGTCGTATTGGTCAGTGGCCTGCGCCGCCGGCGAGAT
CTCATTTTTTAGTTCGTGTGCTTGTTTGTTTGTTTGGCCGCAGATCTCCCCGGGTGGCCG
CTCTTCTCGCCACCCAAGATGCAGCTGACCAAGTGCGCCAAGTGCCCCCGAGAGTTCTGC
TCCTCCGTCGCCCTCCGCCGCCACACACGCGTCCACCGCCGCGCCCTCAAGATCGACAAG
GTAGCCTCCCTTCACTTCACTTGGGTGTAAAAAACAAACACTTTACCTGGTTCTAACATG
TGTGTACCCCCTCTGTACACAAATATCAGATGTTCTCCGTGACCTTTTTCCAAATCGGAT
GTATATAGACATGTTTTAGCGTGTTTGTTCGCTCGTCTCAATTCGTACCTAGTCCATTTT
GAAATGTCCAAACGTCTTGTGATAGCAAACGGATGAAATACTAGACTGATACATGCTGCT
TTGTGCCTGCAATTTTTTGCCCGACTGTTCAACACATGATGTATCTAACTGAACACCCGT
CAACATGTGGACTCAGCGGATATGGCCGTACGATAATATGTTCGAAAGAATGGCGTGACT
GAGCACTTCGGATAATTAAAATGGCGTGACGTCCATTTGTCCACGCCTTCGGTTTTCTTG
TGTTCAGCACTCCCCCCTTGTTACCCCGCATTGCCATGATGTATTTATTTGCTGATGGCT
TTTGCAGGATTTCCCCAAGAACAGAGACCATCTTGCTGCATTCTGGGACAAAGTAAGAAC
ACATGCTCTGTTGTTTTTCTTTATGCTCTGTTGTAATATAATTAAGAAAATCGAACAACT
TGCTGACTGATTGTGGGCTAGTGACCTGTATAACCTATTTACATGAAGCAATATGTTTCC
CTCTCCTTGCTAGTAGTGTGTTTATATGGAAATAACTTGTCATGCTCTTCAGCTCACGGT
GGATCAGGCCCAAGCAATACTGTCTTTGGAGGGTGTGACTATAGAGGTAATGATCATAGA
CCAGTATATCCACAATATACAAGTTTTGTGTTTGCATATCAGTTTGTATTTCGGAACATC
TAATGGTATGTACAACAAATACATCTTCAGGAAACCAGTGCTTTATTCATTTTGACATCA
TTGTCGTCATGGATGTGTAAGCCGGGCTACGCTTCGTTGCCGCTGCCATATGCCAGAGCT
GGCAATGAACTTCTGGTAAGGCTTTTGACCCAAGTTGTTACTGTTCTACTGTATGCATTC
TGTGTCGAGTAGTATCTTATGTAAGCTTCTTTCTCCTTCCTCTCTAGGACCTTATTCAGA
CAGCGTCTTCAAGACTGCCTATCTCATCAAATGAACTATTTATCATGCTCGACGAAGCAA
GTGAGAACACATTTCTTTGTACCAACGCAGCCGATGCTGCCTGTGTACAGAAGTTCTTGT
TTGATGGGGAGGTTGACAAAATCGCAACAGAGTTGAAAAACGTTGTTGCGTGCACTAGTT
ACATCCTTGAACAGAAGCTGGTACGATGTGTTTCCATTATGCAAAACAGAGTTAGTGCAT
TTATCCATTAGCTACATTTTTTTTACAATTTTAATGTATGACTGTAAATAAAATAATAGG
TCGAAGCATGGTCTGCTGATAAGGCTGCTGAAGCGTTAAGATGCCAGAAATTGCTTGTGG
AGGAAGAGGACGCTGCTCAGAAAAGGTTACTGTCTAATGTCATTGACGTGTTATAATTTC
TCAAAGTTCTCGAGCCAATATTTGCTAGTTTATTGCTTATAATGCAGCATCATCTTACTC
AACTTTGTGACGGAGACCTATATCTAAACTATCCTTGTATAACTTGAAGGCAAGCCGAAC
TCATGGAAAGGAAAAGGATGAAGAAACTGAGACAGAAAGAACAGAGGTTGAAGGACCTCA
AGGACGAGTATACCACGGTCCAGTTACCTGAAGTGGTGGATGGAGGGACAAGCTCTCCTG
GGATTCAGAGTCTCGAGGCTGTTTCAGGCCCTGGTCTCCATGAGCAAGAGGATCCACAGC
ATCTTCGCTGGCCAGCACCAGTGCCTTCAGAGGATAATGGGTGTGATGGAGAAGGTGCCA
GTTGTGGTTCGGGACAAGTAATGGACACTGGGGCTGTTTTCAGGGAACAAGCCATGGCAG
CAATCAATCTCGAGAGGGTAGAAAACCTTCCTCAGAATAGCACTGTCTCAGCTTCTTCCA
CGACTGCGTCGAAGCATCCATCTTCAGTAAGGCACTCACGCCATAGGGAACTGAATGTTG
GTGCAGTTTCAAACAAAAGCAAGACCTGGGCATGGAAAGTGCGAACCGATACGGAAGAAC
GGTGCCCAAAAGTCGAGCCAGATGCACATGCTAATCAAGAGACGGCTCCGAACACGGACA
AAAACTCGCAAGTGCTAATAGGGTCAATAAGCGTTGCGATTGAAGACGACAGTACATGTC
TACAGGATTCCAAGGATTACACAGCCCCTGAATCTCATTTGAACACCCTGAACCATCCAG
TGGCCGAGGCGATGCAGCCAGTTAGCCATGATGAGAACGGATGCGAAGACACTAACGCAG
CAGAGGGTCACTCTCCCGCTAGTGTGGTGACAGATGAAAGCTGCTGCGGGGCAGAGCCGG
CAGAGGGCGGAGGCCTACGTCAAGGCGCCGTGTCTTCTGGTCAAGAAGCGGCGGCCTTCC
TTTCTCAAAGTAAGCATCGACCAGACCTTATTGGTCGTTGGTTCCATTTTGCATCGACCG
TATTGTTCAATCTGGGTGTATTTTGTACATTTCCCCTGCTGAAGTAGAAATGGAATGTGT
GGGGTTATTAGCTAGCTAGCCTATGAGATATTTTATAATTGTCTTGTATGATTTGGCACA
CAGGGTGGAAGGAAGCCATGGCTGGGGATCATGTGAAGCTTGTTCTATGCTGAGGAAACT
GGAGCCGCTCAGGTTCCACTGTGAGGACCGATCTATTGCATACGAAGGCGTTCGACCATT
GGGTCCTGATTACTATATGAGCTGGGCCGAGCCGACCCATGTAGCAGATTATTATGGAGT
TGCAAAGCATGCATTCCATGTAGGGAAGTTAATTTGAGTACTAGACTTGGTTGGTTGGTT
TGTAGATGGTAATGTCATGCTTTGTGCGGGCCAGTAAAATGCAATGCTTGCACGGCGCAG
TTAAATTTGAGTGCTATACTACGTACTTGATAGTAGTTAACTAGTAGTCGAAGAGATGTG
TGTTGTGTGGGGAAAGTAATCATGTGATGAAAAGATTGACCAGTAGAATTTCGTTCATTC
TGTTTCCTTTTAGGTTTTGGAGGCTCTTCTAAGAAACAACAAAAATGTTGGTAGGTTGGT
ATAAAGTATGTCTAGTCTTTGGCCCAATCAAGATATACATCATGCACTAGTGCAACTACA
TTTTTTTTTTTCTGATGGTGGGTGTAGTACAAGGCATTATTCTTCAAGGGTCATTATTTC
CTGGTACAGAAGATTAGCTCGTCAGTAAATAAAGAAGTTGAGAAACAGAAGACTCAAGTT
CCTTGTTTGGGTTTTGCTTCATCAACTTGCTTGTATTTTCCTTGTTAGAATCATGTTTTG
TAACATCCCGGCTACATCTGCATAAAACATTGATAAGGTACCATAACATAGAGGCCCATG
GGCCGAATCGGTGGGTTTGAGTAGACTTAACTCTTAAGGGTGCTGCAAAATCTTCTAAGA
AAAAACTGTTGCTAAAAAATACTGTAGGTGCCGCCAACTCAGCTACATGGCATTTTTTCC
TAAAAATAATATATATCACACTTTCTTGTATAGATCTTGTCGTGTGTATTCATGTCGCCG
TCGGGTGACACCGTTTGGATGCTAGTTTCTCCAAGATATTAATCTATAAATATTTATTTG
TTTTATATTGATACAGATAAATGCTATTCATCTCGGCTTTTGACTATTCGCTAGGCTGAC
ATAGCACGGATTTGCAAATCCAGGTGCTTACATATATACTTGTATTGTATGTGCCAACGC
CAATTATACAACAACATACTCCCTCCCTCCGTAAACTAATACTCCGTAAACTAATACAAG
AGAGAGGACTAATTTAGTAATCTAAACATTTATATTTTTATAATAGTTTATAGAGGGAGT
ACTTATTTAGGTGGCTAATACCACTGAAGCAAGACAACAACTTTTGAGATATTCATCCTT
GATTGATTCGATGTAGCCTCTTGATCGATCGCCCGGCGGCGACCTCTTGGATGTTGATGC
GTTCAGCTAAAAAATTGATTGGTGCAACAAAACAAAGGCATCAACAGCAAAGTGTGTACA
CCATTTTCCTTCACGGCTCCCTACCGGAGTTTCTTGGAGCTTCTTGGAGCTCTTGTCGCA
GCAGCTCGGGATCGATCCACAAGACAAGAAACAAGAAACAAACAGTGCTCCGCCTCCGCC
TCCAGTTCCATTCGCCGGAGATCGACCACCGAAGATGCTGCCTTGGATCTTCAGCCGCAA
GGGCGCCTCGGGCTTCTCATGGGCCTCCACCGCCGACCAGGTCACCGCCGGCATCTCCGC
GGCCGGGCTCACCGCAATAGTCACCGGTAGGTA
