Contig Data
morexGenes
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Map Locations of contig_38017 (5339 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_38017

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53047 5 1367 bp MLOC_53047.1 Available Available LOC_Os06g12530.1, FRAME:+1, EVALUE:1e-120, 13106.m01368 protein CS domain containing protein, putative, expressed





CDS Structure of MLOC_53047






Contig Sequence (5339 bp)

>contig_38017 5339 assembly3_WGSMorex_rbca.fasta
AAGAGCATCTATATGTAGAAATACAAAATCTGCAAAATACGGCCTGTATCTTGATACGTA
TTTGCAAAAAAAATTGAAAGATGGCACCAACTTATGAATACGGCCCGAATTATGGTAGTC
TTTTGCAATTAACTACGCTGTTTGACCAACAACACACGCATCATAATTTATACTATATCT
AAACTATGGTACAACACAATAATAGAACACGGCACGGTGAAATGCACGTTGGTAAACTAT
GTTGATGGTTTGTTTTAATGAAAACCGAGTCAAATCGTTTCCACGAGAAATCTCGTTTTT
GTTTTCGAGAACAAAACGTACTCATTTTTTCCTTTTCCTTTGAAAGTAAACTGGCTCATA
AGTTAAAAATTCAAAGACACCATTTGAATACCATAGTAGTGGAAGTGAATAAACATAATA
AAAAGTTTGAAATAAAATACTTTGGGAACTCAAAAGACACAGTTCGAGTAGACACGGTAG
AAACTGAAGCGGAATGCGAACCCACCCCATGCACCTCCGGAATGTTCGAGAGCAAGCCGT
GGGGCGGCGCAGAGGTCTCATTTTAAGCGAGACCCATAGCCTCGTCAACCCATTCGTCTG
CGCCGAAACCCCTCTCCAATCTGAGATCCCCTCACGAGTGGGACCCGAATCCGAAACCCT
AGAGCAGAGCGGGAGGGGCGGCCATGGCCATCATCTCCGACATCCAGGAGGAGGAGGCGC
CGCCGTCGCAGCAGCCGGCCCCGGCCCCGGCCCCGGCAGCGGTCGACGTGGACCTGGAGG
TCCTCGAGGCGGTGCTCGAGCGCAAGGGCGGCGCGCTCCCGTTCCTCCACGCGGCCATCG
ACGTCGCGCACCGCCGCTCCGACCTCTTCCGCGACCCCTCCGCGGTCGGCAAGGTCACAG
CGATGGCCTCGGCGTGCAGGGCGCAGGTGGAGGCGGAGGAGAGGAAGGCCAGGGACGCCA
AGAGGAAGGCGGCGGAGCTGGAGAAGGCGGCGGCGGCGGCGGCGGCGGCCGAGAAGGAGA
AGCGGGAGAGCTCGGTGGTGACGGAGGGCCGGGGTGGCAGCACGGAGGTGGAGAAGGAGG
AGGGCAAGGCGAACAGTAAGTGACCTGTTGTCATTTCCCTTCTACTTTAATTCGTATTGA
TGCTTAGTGCTGGATTATTGGTGTGATAATGTCGAATTTGTTAGTTCATAGGGTTTAGGA
TATTGTGGCCTCGATGCTAACTCTGAATTATAGCTTTTAGATAGGTCGTGTGGTTTGGCC
ATTATTCATTATTTGCGTGATAGCTTGGTTGATTTAGCGCCATAGATATTCAATAAGTTT
ATGTTGATGCTTTGGCAAATCATGAGCAAGCGGAAGGTGTCTGTTTCAGTCAAATCGTTT
TCTATGTATGTGGTTTGAAGCCATTGTTCACTACTTGCGTGCTAGTTTGGTTTGTTTAAA
GGCTCAAGTATTTCCTACTTGGAGTTGTTAGTGGCACTGATAATAGATGAGTGTATGCTA
TGCTTTGACTGATCATGAGCAAGGACAAGTTGTCCGTTTCAGTTTATGAGTCCCAAAGAT
AGAGCAATGCTCAAGTTTTATTTGTGTAGTTCAGGACACTTCCGAGAGAAATAGTTTGTA
TTATTGAGCAGATGCCCGGTTCAAATAAGAGGTGTCACTAGGTTTAGTTGTTACATGGTA
GTGTTAGGAACTTAAGTCTAATTCACTTCTATATATGAGTGATTTATTTGCTCGTCAATT
TGCTCTGCTCCTGAAACAATAGGACTAGCAGCATGGTTAATTACTCTCATTTCTCTTACG
ACAGCTCTTGGTTAGGATGAAATAACACTTGTTCAGTTTCTTGAAAAACTACACTTATTA
TCATCTATCTGCTTATGATAAAGTTTTCCTTTTCATCTGTAAAACTGCCCCAAAACCGAG
CCAGTTTGTATAATTATCTTCGTTAATCAGAAGTCATGGTTCATTGCAGTCAGAAACTGC
TTTATAACTCCTAAGTTGTTCAATAACTGAGTTGCTTTCTTGAACTAGGTTATGTGCCAT
AAATCATGGTGAAACATTGCACTTGATTTGTTAAAACCCTGTTTTATTTATGGCATCTCC
TTCATTTGCCTATGAAAAATTTCATTATATTTCAGTTATGCACTCTGCGATTAACTAATG
GTGTCTCTCATCTCACTAAACAGAACCAAATGCTGGCAATGGTCTTGATATGGAGAAGTA
TTCCTGGACTCAGCAGTTATCAGAGGTTAATGTCAATGTTCCTGTTCCTGAAGGAACAAA
GTCAAGGTTTGTTGTCTGTGAGATTAAGAAGGATCGTCTGAAAGTTGGGTTGAAGGGCCA
GCCTCCCATCATTGATGTGCGTGGTATCAACTACGCAACAGTTTATCTTGTCCTTGTGTG
TAAGAATCATTTGCTGATGCAGTGTTCCTTTGTTACCAGGGTGAGCTTTACAAACCAGTT
AAAGTTGATGACTGCTTCTGGAGCATAGGTATGAAGCACAGACCATTTATGTTATGCCAA
GTGCCCCACCTTAGGATCCCTTACTAATAAAAACATATTTTCCTTCTGATAATACCTTCA
GAGGATGGGAAAGCACTGTCTATACTGCTTACAAAGCACAATCAAATGGAGTGGTGGAAA
TCTGTGATCAAAGGTGACCCTGAAGTTGACACCCAAAAGGTGGAACCAGAGAATAGCAAG
CTTTCTGAACTGGATCCTGAGACTAGGCAAACTGTGGAGAAGATGATGGTAAGCGCTGGG
CACAACCTGATTTGATTGATGAATCACACGCCTTGCAATTTCTTCAGACCATTAAAAACA
GGCAACTAACTTTGTATTTTTCTGTGTTGCAGTTTGATCAGCGTCAGAAGCAGATGGGTC
TGCCAACAAGTGATGAAATGCAGAAGCAAGACATGCTCAAGAAGTTCATGTCTCAGGTAA
GTGGCTGCATGTTCATCCTATTGTGTGCGTTTCGGTTGACTTGCCATTGCCTGCTGTGTC
TGATTGAGGTTTCCATTGCAGCACCCAGAGATGGACTTCTCAAATGTGAAGATGGCTTAA
GGTGTGCTGGATCCAAGGAAATGCAGAAAGTTTTTTATGGAGGAATCACATCTATCCTAG
TTATTTTCAGTTTGAGTGTCTTGTGGTTTAGTGTCTGGTTATTGCTACGAATTTTAGTGT
CTGATTGAGGTTTCCATTGCAGCACCCAGAGATGGACTTCTCAAGGACACAATGTCTTGT
GGCTTAGTGAACTCTGTTTTCTGTGGTTGGAACCAATCAGTTGTCCAGTTCTCATGTTGG
TGTACTTCACTTGTGCGATTTCTAGCTACCTGCATCCCTTTATAAGCTGTTTATCTTTAG
TAGGCATTATGGAGGACGGGCTCTATGGAGCTTTTTTTCAAAATTGGAAAAAAAAATCAC
ATGCGTTCGTATTGACTGAGATTTGTTGTTAGATTTCTTTGGAACATCAAAATGCTAAAA
ATTCCAAAACAGACGTGTAATGGACATGCGACTAGCATTTCCAAAACATCAAAATGGCTC
ATCCTTCATCTAGCATTTCTGCTTTATCTTCTCTTACACTATTGGTGTAATGGACATGCG
ACTAGCTGACGTCTGACATTGGTGTCATAGCAAAGTGAGGCTTGCAATGCTTCATCATCA
CCAAGTTGAAGAAATTGTATCTTAGTATCACATAACAGAATGAAGGAAGAGGTCAAGGTT
TATGTGCTTATGATGACACAATCCAAAGAAAGTGGCATATGATAAAAAAAACATGTGCTT
ATGATGACTCAATCCAAAGAAAATGACATGATAAAAGAAAAACATATCTGATAACGCCTA
AAATCATATTTTATCTGTCTAAAAATAAGTGTCTCAAGCTTAGTATAACTATGTAGCTGG
TACAAAGTTTTATTTTGGACAAAGATAGGAGAGGTTTGAAATATCGCCCATCTAGGTGTG
AGATTTTGCGTGGCTTTACCCTGCCCATATCAAGTAAATGAGATGGGTCCTCACCCTTTT
GATGGTGACATTGAAGAACCCTAGGCGGGATTTTGTTTGCTTGTTTTTTGGTTGTCATGT
GTATGGTCTTGGGGTGTCTTGGTTTAGATAGACCGACACGTTGTTTTTGGTTGTCAATCT
TACTGTGTAGATGCTCTACATGTTTGGTTTTCGTTCTATAACCAAGCTGAGTGAGATTTA
ATTTCATGAAAAACTTTCAAAAGACAGTACTTTGAACCCAAGATTTTTCTATTTCTCTCG
CTTGAGATATATTAACATCCTAATACCTCATTATATAATTAAATACCTCATTTTTCTATT
TCTTTCAAAATACAATTATTTGAATTGTTTATGTATTTTTCAAAGATTTTGCAGAGCCAA
AATAACCTCATTATATAATTAAATACCTCTTTTCTTGGTGCCAATTAAAGAGGACCATCA
ATTCTAAGCATAAGAACAAACCTCGATAAGACAGAGTGCGTTCTCTTCGGAATTTTCATC
GTAGAAGACACAATCATAGCATTCCACCTGCATGGTTTTCCCTTTAAGCAAATTCCATGT
GTTACTCCGTCGTCGTGGAGAAGAAGCTAGAAGAAAATTTGGTGTCTCAGCCTACAAGCA
CTTTTCCTGGGCCTCTTTATCTCCTTGCATCCAATTATATACTTTAGTAGATGAGTAGCT
TGATCCCTTCCATCCGTAAGACCACTTATCATTGTCTTGACAAATTCCATGTTGAAGTAA
CAAACCTTGGATTTTGAGGAATTGTTCAAAAGATTGAGAAGAAAGGGGCATATGGAAATG
TTTTGTTAAATCTCCGGTGTTAATCATGGTCTCCAAGGAGATTTTTTGAGTGACTGCAAA
AGATTGGAGCGTAGGATATTGAATTGTAATGGATTTTCGTGCCTATGAATCATACTAGAA
TAATTGAGCTTCTGCTTCTCACTTTACATACTGCAACATTTGTGAAAGTTGGGATTAGCT
TTAAGTGTGATCTTCATAAAAAATGAGTCTTCTCTTCTCAAAGTTTGGAGTAGTTTGGAT
TACTTTGGTTTTACATATTTTCTGTGAAGTAATTGGTGATGTCTAGTGGTTCTAGAGAGC
ACATGGGGAAAATGTGTCGGTGAATGCTCACAACATATGTCATAGGTAGGCTAAAGTCGG
TGAGAATCGAAGGGACAAAGGTGGATGCTGGGAACGAGGTTGGTACACGCATGGGACGCA
TTATATACCCAGGTTCAGGGCTCTCCGTNGAGATAATACCCCTAATCCTACCGGAGTGTT
TGATGTATATGAAGAGAGTACAATGTCGCTCCCGGAGCTGAGTTGGGAGGAGGAAGAGG