| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
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Predicted Genes from contig_37993
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_53016 |
3 |
812 bp |
MLOC_53016.1 |
Available |
Available |
LOC_Os07g47540.1, FRAME:+3, EVALUE:1e-81, 13107.m05066 protein DUF567 domain containing protein, putative, expressed |
| MLOC_53017 |
1 |
784 bp |
None |
Not available |
Available |
LOC_Os03g60670.1, FRAME:+3, EVALUE:7e-34, 13103.m06662 protein retrotransposon protein, putative, unclassified |
| MLOC_53018 |
2 |
2578 bp |
MLOC_53018.1 |
Available |
Available |
LOC_Os07g47530.1, FRAME:-1, EVALUE:0.0, 13107.m05065 protein AAA-type ATPase family protein, putative, expressed |
CDS Structure of MLOC_53016
CDS Structure of MLOC_53017
CDS Structure of MLOC_53018
Contig Sequence (8930 bp)
>contig_37993 8930 assembly3_WGSMorex_rbca.fasta
TTCGTGCAAAAGAAACTTGCAATCAAACCAAATGGAACTTGGAACTTGGATGACCTAACC
CTAACCCTAACTTTGTTCCCCCATTATGTACTTACAAAGAGCTCGCTATCCATTGAAACC
ATGCAGATGTCCTCGTCCGAGCTTTCGTCATCATTCCAGGATGCCATACTCAAGTTCTAC
CGGCAGCAATGCCGGCCACGGTGATGGCGATATGCTTAAAGGACGAGGGGAGAGTGAGAG
GATGAGGATGAGTGAGTGAGCGAGAGGGGGAAGAGAGTGGCTGAGCTTGCTCTCACTGTG
GGCCCACTTCTTGAGCCGCTTCCGACCGCACACGCGCCGTTAACAGCAGTTAACGCGCGG
CCGTCCACCCTTGGCACGGGGTTAAACGCGGCAAAGCTGGCGGTTAAAAAATGTGGTAGT
TTTTTGCGATGGATTACGAAAAAAGTGGTAGTTATCCGCACAAAAACGTAAAGTGGTAGT
TACTGGGCTTGTTTCCCTGAAATGTGGTAGTTTTCCGTTAATTACTCCAATAAAGTGCAT
TTCTACCCCTTTTTTATGAGTCAGGGTCTTATTTTGCAAATATTTTTTGCTTAGATGATC
ACACTATGATGAGATAACATTAGAGTGAAATCGTTTTTTTATGAAAAAGAAACTTTGAGA
GAGTTTTGTTGATGGAGGAGCTATTGGCTGAGTCGTTGTGATGTTGTTACAAATCGCAAC
CTTGATGTCTATCTCAATTGTGTTCACTTGAACCATCATACAAACGTCATAATTATCTGT
TGCTCATACGCTGAGAGCATCTTCAATAGACGGTTTATATGTAAAAATAATCAACTTTTG
AATCTTCTGAGTCAAAAAACAGCTCTCCAACAGATGGCCCATATACAAAAAAAATACATT
TTCGCCTCAAGGAGATGTAAAATACAACACCTCACGGTGCAAATTTGCAAATGTTTACTG
GGAAGCCCATAACGTGAATCTTAAAAATGTTGAACGCACGGAATAAGAGGGTGGCGGGAC
TCCCGGGTGCTATCGCACCTTTTAACTTGCAAATGTTTCACTCTGGGCTACCGCAGGCGC
AAAGCACTTGAGAAACATCATGCCGCGAGAGTAGTAGCTTTGTAATAATATTATTGCTTT
TGATTATAAAAGCAACTCTTAACTTCTTCTTAATTAATGGATGAGGTAAAAAAATTGTCT
TCGTTTCTTTAGTATGTTTAACTGAGTTAGGATGACAAGTTTGCAACTGGCATACCATTT
CACAACGGCAGAGATTCTAGAAAAAGGCAAAATATAAAAGCAATGCCTATCAAATTTGAA
CTCAGACATTCACTCAATTCATCTTAACCCAATGACGACATGTCAGAGCAGCAAGAGTGT
TGTGGTCGATGTACGAGAAGTCTGAATAGACTAACTCAACTCAAGCCGCCCTATGATCTG
CTCCATGACTCAACGAGCTGAGCACGATCGCATGAACATGGCTATAGCCTCCTAGCTAGC
GACCAATAGAGTCCCGGGCAGAACCACTCACTGAATATATATAGCTAGGCATCCCAATTT
TGACAAGGCAACCATCTGTACACACTTTTCGATCGCTATTTGTGTCAATAACAAGGTGCT
AAACTACCACTTAACTAACAGGATCAGGACCACTGAATCAGGGTCAGGACCACTGTATCA
GGATAGGGGATCAGGATCACCTGTTTAACTAGATGAATTTCGCCGATCCACAAAAAATAA
ACATGCTTAAGCCCAGCAGCAACAACCCCTGGTCCTGTTTCGAGTTGTCAGGCACTATTA
TTATTACATGAGCATCTCCCATTTCTGCGCGTAGACTAGTGCTCTATTATTGTTTTGGGA
GCACTCCATATTTACGCAACAGAAACCGAATAATTGCACTTTAAAAAGATCGTTAGAACT
GAGCATTTCTCAGCCGGCCTAGAAATAGCAACAGCAAATCCTCCATTATTGTACCACCCA
AAATCTCATTCCTAAAAACAATGGAGATATCCACACACGGTCGGTACTTAACAATGGAAG
CATGTGTCCTTCTGCTCCGTGCTCAAGAGTCAAGACCCCAAGAGTGCTTATCTGCAGCCC
CCGGACTGAACAGTCTCACATCATCATCGACCTCGACCTACTATGCAGACTAATCGTACT
CCCTCTATTTCTAAATACTTATTGTTAGGAAAAACTAGGTTAGTTTCTTCCAACAAGTAT
TATGACACAGAGGAAGTATTTATTTAAGTACGCGCGCATCAGCAGCCAATAGCCCATTAG
CATCAGCTGGATGGAAAAATCAGTTCCTTTTTGGAACCTTGCGCGGCGCTTTTCCGCTTT
ATATATAATTTGGTGACGACGGGCGTGAGTGCTGCCTCCCGCCTGCTACGGCTGACTAGA
CATCTCGTACTGATCTACTTGCCTTGTTTAAGCGCTTCTAATAATCCACATTATTGCCTT
TGGATTAACTAGTAATTGCTGCTGTTGCTTCGTGCCGTCAGCAACTGCAGTTCCAAACCC
ATGCGAAAAGCGAGCATGCATCTCTCGACGCATGCACTTTTCTTTCTACTTTTAAGCCCG
ATCCTATGAAGTACCAAAGGGCCGTTGTAGCTGTCGCCGTCATGCTTCTAGTTCAAGCTT
GCTACTAATTAATCACGGCTATTTTGAGATGGCTTTTGCCTTGCGCTGAGATGGTTGGCC
GGCTGTTGGTTTCGGTGCTCGTTGGCGAGATGAAAATTAGTGTAGAAACCCGCACGCAGG
GAGCAGTGGAACTTGGACGCGAATTGACTGTTTGCCTGCCCTTTGCCTAATTAATTGCCG
CCATAGCTCGATAAGCATGCATGGCCTAAAATGTGTGTCAATGGTTTTAAAATATCACCT
GATTAACTAACTAGGACTGCCCTCCAAAAAGAGCATCATCCCAATTTGTCCTCCTCTCGA
TCCATATAGTTTAAGCGAGCCAGCCACCACGTCACCAGCGCTTTTGCGCTTTTGCTCTCT
TCCTCCTCCTCTGTGTATATATCGAGAGCCCTAGCTTACTTAACCAGATCACACATAGAG
TAGAGACACACGTTAATTAGTGCGCAGGCAGAAAAGCTCAGTTAGCACGGGCAGAGATGG
CGAGGGTACACTCTTCGCCGTCGTTTTCTTCTTCTTCGTCGCCGGCGGGCGAGGGGAGGG
GGAAGGTGTTCACGCTGTGGCTCAAGTCGCTGGTGCTCAACGGCCGGGGTTGCACCGTGT
ACGACTCCGACGGCCACATCGTCTACCGCGTCGACAACTACGGCTCCAAGTGCAGCGACA
ACGTCTGCCTCATGGACCTCCGCGGCAACATCGTCGTCAACATACACAAGAAGGTGCGTG
CATTTTTTCTTTTCTTTTGATCTGTAGCCAAGAGCGTGCGTACGGTCAAGCTAAGAATAC
CATCACGTTCTGTGAAAATGGTTTGCATCTTGGGACAGACAAGAGAGGTAGTACCTTTCA
CTCTTGTACGTATGTATATATGATCTTGAAGTTTCTGACTGGTTACTTAATTGTGGATGC
GTGCAGAAGCTCGCGTTTGGCAAGTGGGAAGGGTACAAGTGGACCGGCCGGACGCAAGAG
GCGAGCGCGTGGTTCAAGGTGGCGCGGCCGCGCGGCGGCATCTTCCACCGGAGCGGCCGC
CGCCCGTCGTCATCGCCGTGCGAGTTCGAGAGCGACGCCGGCCGCGCCATGCGGTACAGG
ATCGACGACGACGGCGGGGCGCGCGCCGGGAAGCGGGCGTGCTGCAGGATCGTGGACGCC
GGCACCGGGCTCGTGGTGGCGGAGGTGAAGAGGAAGGTGACGGCGGGCGGGGTGGCGCTC
GGGGAGGACGTGCTCGCCCTGGTGGTGGAGCCAGGCGTCGACGACTCGCTCATCATGGGG
CTCGTGCTCGTCTACGGGCTCATGAATCGCACCATGTGAAGCTAGCAGAACCACAACACA
ATAGAGACTTTTATAGTCTTTCTTCGTGTGAATTACTACCGTACCGTGTAACTGCGAGTA
GAACGACTACGTAGTGTGACACAGATGACTGATCTACAAGTGATTTTGATGACACGACAT
CTCCGTCAACCTTCGATGACTTTGTTAACCTTAAGATTCGCTTATAAGAGATCGTTTGCG
TTTGTACTGCCAAAAATGTTCAGCGGCACGTAAGATAGGTTTAACAATAACACACTTTGT
TCCTCCGGCTAGATCAGCGCAAGTTGTTTATTCCCTTTCTCAGGTCGCTGGACAGTTGAC
CTGAAGGGTAGAAATCACTGAGGAACACACCGCATCCATGTATTGATTAAGACATCGTAC
AATGCGAGACGCTTATTTGTAAAGAATAGATGCTTAATTAGGCATCCCTTACTCGTAGTT
GAAAAAAATTGGTTTATTTTACTAAGCACCATGCACTGTATACAGACCTAAATGGTTTCG
CACTGGCTGGAACATCAATTAAGTGAACTGTATTCTGATGCTGAGTCTACATACAGGTTT
GACCGTTCAAGGACCAACCAGATCCTATGCTATTGCTATCTGTCGAAACTCCGAACTGGC
ATTACAGAACAATTGACTCAAAAAATTGCCTATGAATGAAGAAACCAACAGAGCTATTCA
TTGTCTATCTTCTCAGTCCGCTTCACTATAATGTTTCTGTTCTATGTACAGACTACACAT
AAACTACATGAAGTAGCTTAGAGGTGTCTTCTTTCTAGATCCGCCTTCACCGTAAAGCTC
GTTCCACTGAACAAGCTCGTTCATATTTGTCGAATCAGATGATATACTTGCACATACCTA
CAGACGAGGCAAGTTACGTTAGAATCACACTTTTATCAACAACTTTGAGAGAAAAAGCAT
AAAATGACAATGCGGGTAACCTGAATTTATTATAGTATATCCTAGAAACAAAATTGATGT
TACAACCCAGAACATATCAATACTGGCATTATACTCTCTAATCTTGAAACTAAGCCCTCA
AGAGCCGTCGCCGGCAATTGTTATATATTTGATTGATGGATTAAGTTTCACAGCCGGTGA
GGGACATCAAATCTACTTGTATCTTAGAAACAAGTTGTGCTACAACCCAGAACATACCAA
TAGTAGCATTACACTCTCCAATCTTGAAACTGAGCCCGCAAGAGCTGTCGTCAGCCTTTG
TTATATATTTGATGAATTAAGTTTCGCAGACAGTGAGGAGCATCAAATCTACTTGTGTAA
TTGAGTCTGTTTTGCATTAAGTTTATTTTTCTCTTCTTTTCCTTTTGGCTAGGGTAAGAA
ATAGATGAAAATCAGCAGTAATATTTACCTGCTCGTGTGCCTGTTTGAGATCACTCATAT
TTAGAGGACGGACATCACTGCTAGAATACTTAGGAGGCAATGGTTTGTTTTCTGCTTCTG
CTAAGAGTCTCTCCTGCAAGTAGACACAAGATGATAGATTGGAGATCTGATGTAGCCTCA
AACAAGGGTATCATAAATCTTAACAATTCGAATTATTAATGATTTGGTTGACCAGAGATT
GTTACTCGGTAGAATTGACAACACATAGGAAAGTAGCACAAGAAATTAAGAATTAAAAAC
TAACCTTCTTCTCTTTGTCAAGGATTTCCCTTATGGGACGATGTGCAGCGGTAATACACA
GATTCTGGGGAAAATTAAAATTGTCAGCAGAAAAAATATGGAAAATTACATGTTTAAAAA
GGAAATCAAATAAGAATCAAATAATCTTAACATAAAACTAAAATACCTTCAGATCACTGC
CTGAATACCCCTCAGTCAAGCTGGCCACTGCTTCTAGATCTACATCTTCGGCCAAATCTT
CTTTGGCTAGTATTACACTAATAATTTTTTTCCTATTGGTTGCGTCTGGTAAATTCACCA
TCAACCTAAACAACAGTTTCAGAAGAATTATTGACTGGTTGGCAATGCCAGTGTCACAGT
TTGCATTTATTTGTTAAAATATGTAGAACCATACCTCCTTGGGAGCCTCCTAATAACAGC
CTCATCAAGATCAAACGGCCTATTAGTGGCAGCAAGTACTAATACACGTTCTTTGTCTTT
TGTTCTCAGACCATCCCAGTTCACCATAAATTCATTTTTCATCTTACGCATGGCTTCATG
TTCCCCCGGGTTTTCACGTCTACCCAGCATACCGTCAACCTGCAAAACAGGGGACACAGC
AAGTTCTCTTAATTCAGACAAACTATTATTGTGCAGCCTGTTGAATCATAATCATATCAT
CAATGATGATGAATTTTTTTGACTGACCTCATCCACAAAAATGACACTGGGAGCAATTTT
GCTTGCAAGTGAAAACACAGCTTTAACATATTTTTCCCCCTCGCCAAACCACTGTTACAA
TTACAGGTAAGAAAATGTAGTACTAACAAAGGAGAGCAATCTGGATAAATATCTGTCATG
GGGAAACCTTCGAGCCAATGCTTGACATTGATATGTTGATGAAGTTAGCACCAGCCTCCG
TTGCAACAGCTTTAGCAAGCATGGTCTTCCCCGTACCAGGTGGACCAAAAAGCAATATTC
CTTTACATGGCTGGTGCAAAATGAAAAATCAGAACAATATTGCACACTGGGTAAGTTGAG
AAATACAGATTGATAAGGAAAACAATATGATAATGGCAGTATTCAACCTGCTACACTCAG
TTTGAAATGATTCTTGTTGCTTTTCTCGATTAAATTTGGGATTGCATGATATTAACTACA
AATTAAACATTTTTGCAGTTTAAATTGAACTAACAGGACATCTTATATTTAGAAACAGAC
ACTGTATAACAAAAGGCTCACAAAAGCATAGACATAAATTCAAAACGAAAAAAGGTTAAT
GCTAGAAAGCACGGAATGATAGAGATGATGAACAAACCACAGGTGGACAGCATTACAATA
TTTACAGAACTACTCAACATGGATGAGTCGTAAGCACAGAAAGGGAGATATCTAACTATC
AAGGGCAAATGACAAAACAAGGAGCCATTGTTACAGGTGAAACAGATGACTCACAGAAGG
AACATGTGGATTGTTTTAGAAGAATATTAAGCATAAATAATGAGGCTTGAGAATGCCTTG
TACCTTCATAAGTTGTCCCTTGGAGAACAACTCTGGCCTTTGCAATGGAAGCATCACTAA
TTCCTTCAAAGTTTCCTTGACATTCTCTAGTGCTCCAATGTCATCAAAGGAAACACCTAT
CTCATCTGGAGGGATAACATCACTAAGAAGCCTCTTTTCAAATTCATTCTCCGTGGCAAC
ATCCTAACAATGAAAAGGAATGTATGTAAGTCATAGGCATTAGACACCACTAATGCGATA
AGGCCCAGAGCCTCAAATAATAGGTGAAACTCAAACTCAATCTGACTTATTTGCACACTT
CAAATAAACAACTGGGCCAGGCTGAACATGGCCAGGTCAAGTCATATACATGAGGTGATC
TTTGCCACTAAGAAAAAGAAAAAAGAAAGTCACCTTGAGTGATTTCTTTGTGCTCTTTTT
CTTATGGTCATTTTGCATGCTTTCCGACAAATCAACCCCATGCTGAAGGCTGAAATGCAA
CAATTTCAGTAAAATAATCATTAGATTTACAAGAAAGAACTTTCTGGTGCAACTTTGTGA
AGTGTACAAGGTTAGAGAATAAACCTTTCACCAGAAAGAGCGAGTAACACATCCTTTCCA
GGAATCGGAAGAGTAGAATTCATAACTTGATGACTCAAAGCATAACCAACTATTTTATCG
ACACCTGGAAACAAATACAATAGACAGATGATGCTACATCGACATTTTACAGGATGGAGA
TATCATGTAGGACTGACTACTCACATTCATTTGTAAGAGTTCGATCTTTAACACATAGTG
TGGTCTCTACATCAGCACATTCCAGACCATTGCGAGTTAGAAACTGCATCCGATTGCATA
AGACGAATTAGTTAAACGACAAGGTATTAAGGAACAGCAGCATCAATTGAGTGGAGCAAC
AATTCCAATTTTAGAGGTCACACTAATACAGGTGATGCAACAATACTATTCTGACCCATA
GTGGAGGCAAATCTATTGGAAGTTTCACCAAAACGTAGGAAAATTGTCAAATAAAAATCA
GAACATATCGTAATCACTCTGGAAATCTATTAACAACTTAATGACGTACTTTTTATAATA
ATCATGTTCGGACTCCCAACTACATAGGAAAAGGCTTCCATATAAAATGCAAGACATTTG
GCTGAAGAGTAATGGAACATATGATTATTGAATAATAGGGATGTGCGAACAAGCAGTTAC
TTGAAACTGAAACATGATAACATTGGGTATGTTCGAGAGGAAAAGAACATTGAAAGTTTT
TTAGTCTATTATAGTCCAAAAGTAATATATAAATTGACGAGTCACTAATCAAGGCACCAG
GGCCGGATGGGTTCACCGCCGATTTCCTGCGAGCCTGCTGGTGCATCATCAGGCAAGACA
TCATGGACGTCTTTGAGCAGCTATACATGCTACGAGGGAGAGGGTTTGGTAAGCTCAACC
AAGCCCTGCTCACCCTACTGCCGAAGCGCGCGGATGCCCACAAGCTGGGCGACTACCGGC
CGTTTTGATACACATCGTGGCCAAGATATTCGCGAAGGTTCCGTCGTTGCGCATCGCTCC
TTAGCTTGACAGCCTGGTGAGCCGCAACCAGAACGCCTTCATCGCCGGACGCACGCTCCA
CGACGATTTCATACTCGTCCGGCAGTCTCTTCGGATGCTCCATCACCTGGGCATGCCATG
CATTATGCTCAAGCTCAATCTCACGCGGGCTTTCGACTCCATATCCTGGCCGTTCCTCTT
CGAGGTTCTGCGCCAATATGGGTTCGGGGACAAGTTCAGGGAATGGCTGGCCATTCTCTT
ATCTTCGGCCAGCACACGAGTCATGCTCAATGGAGTGCCTGGCCCCCCGA
