Contig Data
morexGenes
Links



Map Locations of contig_37984 (4120 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_37984

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_53007 5 2779 bp MLOC_53007.1 Available Available LOC_Os10g20090.1, FRAME:+1, EVALUE:0.0, 13110.m01637 protein CSLH1 - cellulose synthase-like family H, expressed





CDS Structure of MLOC_53007






Contig Sequence (4120 bp)

>contig_37984 4120 assembly3_WGSMorex_rbca.fasta
GCCAGAATTCCGGTGTGCCAAACGGGTCTAGGGTTCAAAATAGACCGGGATTACANNNNN
NNNNTGCCAATTTCAGGGATTCAAAGTTCAGGGTTTGATTTAGCTTTCGTCTATAACTTT
AGGGTTTGTTTTGAACTTTTTTCGTGCAGTGGACGGCTCGCATAACGTTGTGCCGAGCGT
TTGTGTAACAAAAACAGTCGCTGGCGACTTGGCGAGCTCGTTAGGCGTGACGTGCATGGG
TCCAATAATTTACCGTGCGTACGTGAGTGATATCGTCAAGGATAACGGATCCAAACTGGA
GTCCTATTCTCCACACGCCATGGTTTTGCATGGATCCGGCTGGGTGGCACGCTGGACCAA
GTGAGCAGCGAGCACACACTTCCGTAGCAAAGAGACAAGAGCACCATCCCTGTCCCAAAG
ATTATCATACGGTGGCAGTGGTACATGGCAGAACCAAGTAAAGATAACTTTCTCCTGTCC
TCCCACCCTCCGAGACCCCATCACAAGTCATAGTCTAGTTTTGTTTTTGTCCTGATCGGA
AATGCGCCGAGGAGAGGAGAGGATAGTTTTATCTGGTCCATATAAATGCACTCGAGCGGT
TGTTGCTTGTGGAGCTGTGTTCGTGGAGCTTAGCTAGTCTGCTACTGCTACTGCTGGCTA
GTGGCTACCTGCTCTCGGCCACGGCCATGGCGGGCGGCAAGAAGCTGCAGGAGAGGGTCG
CCCTGGCGAGAACCGCGTGGATGCTGGCCGACTTCGCGATCCTCTTCCTCCTCCTCGCCA
TCGTGGCCCGCCGCGCCGCCTCGCTCCGGGAGCGCGGCGGGACGTGGTTGGCGGCGCTCG
TCTGCGAGGCGTGGTTCGCCTTCGTGTGGATCCTCAACATGAACGGCAAGTGGAGCCCCG
TCCGGTTCGACACCTACCCCGACAACCTCGCCAACAGGTACTCTACGTACGTACCCACGG
CGACAAGACCCACCATGCTGACCCCTACAACTTCCTCAAATTTTGATCTAGCTAGTGTCT
GTGATAATTTTGCTAGGATGGAGGAGCTCCCGGCGGTGGACATGTTCGTCACGACCGCGG
ACCCGGCGCTGGAGCCTCCGTTGATCACGGTGAACACGGTGCTCTCGCTGCTCGCCCTGG
ACTACCCGGACGTCGGCAAGCTGGCGTGCTACGTCTCTGACGACGGCTGCTCCCCGGTGA
CGTGCTACGCGCTGCGTGAGGCCGCCAAGTTCGCCGGCCTCTGGGTCCCTTTCTGCAAGA
GGCACGACGTTGCTGTGAGGGCCCCATTCATGTACTTCTCTTCCACGCCGGAGGTTGGCA
CAGGCACAGCCGACCACGAGTTCCTGGAAAGCTGGGCGCTCATGAAGGTTAGGCGCCAAT
GGTGACCATGTCAGTTTACAAAATAATGTTTGGTCGTCCATCATCGCCATGGCCATTCAT
CTTCCTCGTGTACGTGTGACTTTCAGAGCGAATATGAGAGACTAGCCAGCCGAATCGAGA
ACGCCGATGAGGGCTCCATTATGCGTGACAGCGGCGACGAGTTCGCCGAGTTCATCGACG
CCGAGCGCGGGAACCATCCTACCATCGTTAAGGTCGCCGCACTGACCATGTCCATGCATG
TGTCCATGAACATCGTGTCATGACAAACGCATAGCAAATCCGTGTCTCGTGCTAATATCG
TCACGGTTAATTTGGGCCGAGTTCAGGTTCTGTGGGATAACAGCAAGAGCAAAGTGGGGG
AAGGATTCCCACATCTGGTGTACCTCTCTCGAGAGAAAAGCCCCAGACATCGCCACAACT
TCAAGGCTGGTGCCATGAATGTTCTGGTGAGCACTCTCTTTCGCTCAACACAGTGTTGCA
CTGCTAATCAGTGTCACACAAGCAGCACACCACATTTTATACTAATTAAGCTGATCATTT
CGTGGTGCAGACAAGGGTGTCAGCCGTGATGACCAACGCTCCCATCATGCTGAATGTGGA
CTGCGACATGTTCGCCAACAATCCGCAGGTCGCCCTACACGCGATGTGCCTCCTATTGGG
GTTCGACGACGAGATCCACAGCGGGTTCGTCCAAGTGCCACAGAAGTTCTACGGTGGCCT
CAAGGACGATCCCTTTGGCAACCAGATGCAGGTTATAACCAAGGTACTACATATGCATGT
GCACAAGTGCTCTTGTCGTCGTGCTGTGCACCACTAGGTAGTGTTACAGTTGTACTGGTT
TTTGTGGCATGTTCAGAAAATTGGAGGTGGAATCGCCGGGATCCAAGGCATGTTCTACGG
CGGCACGGGCTGTTTTCACCGCAGGAAAGTCATTTACGGCATGCCGCCACCTGACACCGT
CAAACACGAGACAAGAGGTGAAACTGGGCACACAACAGATGTGATCATCAGGCGTAAATT
GGAGTATGCATTTCAGTTCGACTAGGGCATTTCAAATGGCTAAGTGTTCTTAATTTGCCA
GGTTCACCATCTTACAAGGAGCTGCAAGTCAGGTTTGGGAGCTCAAAGGTGTTGATCGAA
TCATCTAGGAACATCATCTCAGGAGACCTGCTCGCTAGACCAACCGTTGATGTATCGAGT
CGCATCGAAATGGCAAAACAAGTCGGCGATTGCAACTATGAGGCTGGCACGTGTTGGGGC
AAGGAGGTATGCTTAGCTACCTGTTGCCGTATTTTTGCAGGTTTCGCTACAGTACATCTA
CAATCTTTTGCAGTTTTTCTCTAGTTACAGTTTCTTCCATGTATTTTTGCAGATTGGTTG
GGTCTATGGATCAATGACAGAAGACATTTTGACCGGACAACGGATCCATGCGGCGGGTTG
GAAATCGGCCTTGTTGGACACCAACCCACCGGCATTCTTGGGATGTGCTCCGACCGGGGG
ACCGGCCAGCTTGACCCAGTTCAAGAGATGGGCAACAGGGGTTCTGGAGATACTCATCAG
CCGGAACAGCCCTATCCTCGGCACCATCTTCCAACGCCTCCAACTCCGGCAATGCCTTGG
CTATCTCATCGTCGAGGCGTGGCCCGTGAGGGCGCCTTTCGAGCTGTGCTATGCACTATT
GGGACCTTTCTGCCTTCTCACAAACCAGTCCTTCTTGCCAACGGTACATACACTTTCGCG
GTTCGCCAAGATACATTATGCAGCTAAACAAAAATGCTGTGTGATTTGTTTGATAATGAA
GCAGGACCTAGTTGGCTAATATGTATGTAAATTCAGATATTTTTTTTATGATTGGTACAT
TTGTTGTTTTGCAGGCATCGGATGAAGGTTTTCGCATCCCAGTAGCTCTATTCTTGAGTT
ACCACATATACCACTTGATGGAGTACAAGGAGTGCGGGCTCTCTGCCCGCGCCTGGTGGA
ACAACCACAGGATGCAACGCATCACCTCGGCCTCCGCCTGGCTCCTCGCCTTCCTCACCG
TGATCCTCAAGACACTAGGGCTCTCTGAGACCGTGTTCGAGGTCACCCGCAAGGAAAGCA
GCACGTCCGATGGCGGCGCCGGCACCGACGAGGCCGATCCAGGACTGTTCACATTCGACT
CGGCGCCCGTTTTCATCCCGGTGACGGCGCTCTCAGTGTTGAACATTGTGGCCCTCGCCG
TCGGGGCATGGCGCGCCGTCATCGGGACTGCGGCGGTCGTTCATGGTGGCCCGGGCATCG
GAGAGTTCGTGTGCTGTGGCTGGATGGTGTTGTGCTTCTGGCCGTTCGTGAGAGGGCTTG
TCAGCAGGGGAAAGCATGGAATCCCGTGGAGCGTCAAGGTGAAGGCTGGTTTGATTGTGG
CTGCGTTCGTGCACCTCTGCACAAGGAACTAACCGGCCGGGCTGGCCATCGAAATATTGG
AAGCGTAATTTTAGTTCTACCATTGGAACATGTAACGAAGACTCAAGCAGGAATTAAAGC
GTGTTATTAAAGGAAGTTTGACCCAATGTATCTATCTATCTCTCTCTAATCTCTCTCTAA
TAATAAAGCAAATTGAGTTTCTGGTCGTCCGTCGTGGCAATTTTACGAAAACACCCCTTT
ATTGTTTCGTAATCAAACCGCGGTCCTTCATTAAGTGAAAAAAACGTTTCGTTTTTTTAA
AAAAAAACATGCATCGGGGCGGCCCAAGGCAGCAGCCAGC