Contig Data
morexGenes
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Map Locations of contig_37952 (4580 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_37952

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_52980 2 2120 bp MLOC_52980.1 Available Available LOC_Os06g48630.1, FRAME:-2, EVALUE:1e-179, 13106.m05172 protein ANTH/ENTH domain containing protein, putative





CDS Structure of MLOC_52980






Contig Sequence (4580 bp)

>contig_37952 4580 assembly3_WGSMorex_rbca.fasta
TTGTTGAATAATATAATAAAGATGAATGTAAAGATGGATGTGTGCATCACTCGATGCAGA
GGCCGGGGTTTATCTTCCTGAGAGGAAAAAAAGTCTGTTCGCTGATCAGCTACTGCATTT
GCATGTGTCTAGCGGCTGGACTGCCTGCCATGTACGAGCATAGGTAGGATTCGCATAAAA
TCACACAAAACAGAAGTAAAGAACTTTGCATACAAATCATAGTTCATGAGTGCATGAACT
ATATATCAAGTACTAAAAGCGTGAGCAAATATAAATGCTCTGGTATTTTTTGAGGTTATT
ATATGCCCCACGTATGTAATATCTCCCTGTCGATGACAGCGATGTTGAATGCAGAATTTG
AAAACAGCGCTGCTGATGTACTGATGTTTATATGTACTAGTACTAATGTTGTTTGTCAGA
GGAAAAAGAAGATACGTAGGATTCATGGCGCACAGCCAGAATGATGCTAGTCAATCATCA
TGTACTGTATCAATTAAAACCAGAGCTACCGGATGCTGCTACTTCTTCTACACAAAACAA
ATATACATATTCAGATCAAGCTGCCGCTCCCATGGCCATGGAAGGGGGTGCCCTGCCCCT
GCCCCTGGGGTAACATAGGAGAGCAGGCGTCACCGAACGGATTGGCCTGAGACCCAGAAG
CACCGGCACCACCATGCTGAAACGGCAGCGGCATCCCAAACATCTCCTGCTGCTGCTGCG
CCATCATCGACATCTGCACGTCGGTCGGCGGCGCGACGCTTGTCGACGCGGCGAACGGGT
CACCGGCAGCGTCCCCGTACGTCGCCTGCTGCTGCTGCTGCTGCCTCCTCGCCGCGTCCT
CGTATAGGCTGTCCAGCAGCAGGCCGTCGAAGCCCCCCGCCTGCAACAAAGCATCGTCAG
TGGCAATGCAGGTGAGGACAGAGTCACATGCATCAATGGATGGAAATGCTACTCGGGGTT
CTGCTCTTTGCGCACCAGTTTCATCTCTGCCGATCGGTTGCTGATGTCGGTCCGTGCCGC
GACCAGGGCCAGCTCCCAGCCCGAAGATCCAGCCATGTCGACAGCAGCAGACGCAGACGC
GCTGCTGCTACCACCTGATCGACGGAGGAATTAATGGAGCAGAGTCAGTCAGTGGTTTGC
TGGACTGAATCCGTGAGGAGACGAGCAGGGAGGAGCTGGGAAGCGTAGCAAGAAGATCAG
AACCCAGCTGCACCTGCAATGCTGCATGGAACATGTTTGTTACCTGGTGCTACAATGGCC
AGTGCCAGTGCGTTGCTCTCCTCTAGCTCTGCTGCTGCAGAGCTCACCTCATGTAAACCC
TGCACACACACACCGGCATCAGCAACCGATATGTTAACATCAATGCAATATACTGTAATG
CACTGACGGACATTGGCAGCTTACCAGTAAATCGAACTCGGCGGTGGTGGTGGTAGGTTG
AGGTTCATCGTTGAGCTCAGCTGCAGGATGGGGTTCCTCTTCAGTCTCCGGCAGCGGTTC
CTCCTCTGCAGGTTCTTCCGTTGTGGCCTCGCGGGGCCGTTCAGGTGGTGGTTGCTCTTC
TTGATCTGCAGTAAGATCTAGTTGCCGATATTCCTGCCAATTTGATTCCAAAGCCAATCT
CGTTACTTGAAAAAAAAAAAGAGCCAGTGAATTTCACCGGAATTCCTGAATTTTATGTGA
TTTCAGTCGATGGGTCCCAACATATTTACGTTTCAGTAAAAGAAAAACCAGGACGCATGC
TTCCAGTTTCAAACACACTGCAAACTCTGGCCAAGTACTGGTTGAATATTAGTCAAGTTC
AAACGACAATGTCAGCCCTTTGGCAAATTGAGAACTGAATTCAGTGACATTTTATCAGTT
TCAGCGGTAACTGAAACTGAGAACCCTTTTTAGCTCATAAGCACTTTTGAGATCAGAGAA
AAATCTATTGAAATAACTGCTCTGGGAGCTTCTCAGATGACTCACGATAGTCATATTTGC
AACGGGACATTTTTCAAAAATCTATTGGACATTTCTTATGCTTTTTATTATTATTATTTT
TTTAGAAAAGGAGGCTCGCCTCCGGCCTCTGCATCAGAGCGATGCATACGGCCCCTTTAT
GAAAAGTTTAAGCAAAAAAATCCGCAGTTCCAAACAGGCTTAATGACTCACAATGGTCTT
GTTTGCAACGTGACCAGCTCTGGGAGCTTCTCTGATGTACTCTTCCATCGTCGCAAGAAA
CGACGCCGGTGGCTGAAGAAAACACAGAGAAAACGAAATCATTTTAGCATAATAAAGATA
AAACACACTCCTGAAGGAGTACTTCCTTGAACTGATGTGAAACAAATGAAGCGAGTGTAG
GTATCTGCCTCTCTGAGAACTGGAAACTGGAAGTTCCTGGCGAGTTCCAAACCCCTGCAG
AGCTCGTAGAATTCAGAGAGGCTCTTCGCCTGGCATTCCAAGCACCATTACTCGTTAGCT
TCAATTCGCACAAACAGTTAATTCCACATGGGAGAATGCAGAAGCAACGCCCGTCTCATA
ATAAGTACACGTACCAGAGTTCCTGTCCTTCTGTAGATGTCCTGGGCTTTGATCGCATCG
AGCTTGCTCATGTCGAAGAACTGCACGAGGCCAGATAGATAGAAACCTCCATCCGGTCAG
AGGCAGAGCTCAACGATGAACCAGTAGAAGACGAGAAAAATTCAGAAACCACAGGAAAAC
AACGCACCACATCCACGAGGTTGATGATGCCATCGTTCACCGCGCAGTAGATCTTGAAGC
TCTCCTTCAGCACCAGGGCTAAGGCGTACTGTATGAGGTAGTTCCCGAACGCCGCTCCCT
CAGGCTGCAGCGGAATTTGGGCACGAATGCTTGCAGAAAACTGTCTGTGCAAAATGTGCA
GTAGTGTAACACGACGATGAAGTGAACCGAACTTCACCTGGCAGCCGACGAGCCGGAAGA
GCAGCTGCTGCAGCGCGGGCAGCTGCTCCAGGAGGTCGTCCTTGCCCAGCCTCCTCGTCC
TGCTCTGCGTCTTGGTGTGAGGCGTCTGCCCCTCCGCTGCCGGCGCCGGAGCTCTGAGGC
GCTCCGCCTCCACGTCGTAGCGCAGCACCGCGAAGCACTCGAGCCGCTCCTCGAGGAAGA
GCGCGTAGGTGCGCACCCACGCGGAGCAGTCCCAAGCCAGGTGGCCCGAGTCGTCCTTGA
AGTTGGACATCTGCAGCGCGTGGCCCCTGCGCCGCCCGTGGCTCAGCAGCTCCTCCCTGA
ACGCGCCGCCGTCGCCCTCCCGAAGCGCCCTGTGGATCACCACCAGCGCCTTCAGAGCTA
CCTGCGCGCGCACGATCCATCCATCAATGTATTCTCAAGATTGTCAATGGCGACGGCGTC
CACGACGTGCATGCGTACGTACCACCCAGTTGCTGGTGTTGGAGAGGCGCCTGGCGAGCG
CGTGGACGCAGTGGGAGACCTCGGTGCGCGACCGGGCGCCTACGATCTCTGCAACCAAGA
CGACGGCGACACCCGCGGCAGCGGCGGCGCAGGTGACTGGTCAGAACTCAGAAGAACATA
CGGGCGGCGCGGGTGCGCGGGGAACGAGAGGAGAAGTGATCTCACTGGCGAGGTGTCGGT
CCTTGGGCGGGCGCTCGACGTGGCTGGTGGCCTTGACAACGGCGACGTCGAGATCCTTGA
GGTGGTCGTGGCCGCTGTTGACCTTGGCGAGGCTGACGGTGGTGGAGTCCTTGATGGCGC
CGCACGCCTTGCGCCAGCTCTTCTGCATCGAAGCCGGGCCCATCCCGCTGCCGATGCGCG
GCCTGGCGGAGGACGAAGGTACGTATCCGCAGGCCGCGGCTGGCCGGCGGCGAGCGGCGA
GCCGGCTTGCTTGGTCCGATGTCCAATCCCCGGGCGTCGCTCCCTTTGGTCGTGCTCGTA
GGAGTTTGTCGTGGCGAGTCGTGCTAGCGCACTCGCGGTCGCGGGAGGACGGATTTTATT
AAAAATTTCGAAATGGGCCTAGCCCATCCTAGCAGTTTTGTGGGCGGGTATTACTCTGGC
CTCCGTCGCGCACGGGAGCTATGTCTCGCTCGTCTCTCGCGCGGCGCTACTGGGCTGGCC
CTGTAATGTAGCTGCAGTGCGGTTTTTTTCTGGGTTTTTATCCTTTCGACTGTTTCCAGC
GGTTTTCTTCGGCCTTCGTAGGTTATACTCCCTCCGTCCGGAAATACTTGTCCTAAAAAT
GAATATAATGAATATATCTATAACTAAAATAAATCTAGATACATTCATTTTTAGAACAAG
TATTTTCGGACGGAGGTAGTATTCATTTTTATATTTTATTTTTTATTTTTTATTTTTTCT
TGGTTTCCATCGTTTTACATCGTATTTCATTTTCCTTTCTTTCCCTAATAATAAAGCGTG
TAGTGGTCGTTTTATAGAAAACCCCTTAGAGTTTTCCGAAATCAGCCCGCAGTCCGGATT
TAAGTGAGAAAACACATCGTTTTTTGTAATTTTACTGTAAACCACCTGTGTTTTTCCGAA
ATAAACCCACAGTACATACATAAGGGAGAGAACGAATGTTTTTTGCAGTTTTACAGTGGA
GAAGGAACTCACGAAAGAGA