Contig Data
morexGenes
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Map Locations of contig_37950 (6203 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_37950

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_52977 1 2316 bp None Not available Available LOC_Os06g21260.1, FRAME:+2, EVALUE:3e-157, 13106.m02273 protein retrotransposon protein, putative, unclassified
MLOC_52978 3 1420 bp AK253060.1 Not available Available None





CDS Structure of MLOC_52977






CDS Structure of MLOC_52978






Contig Sequence (6203 bp)

>contig_37950 6203 assembly3_WGSMorex_rbca.fasta
TGGAAGTTTGCTATCCATGTGCCAGAACCATGAGTTGGTCGCGAGATCTGATGGGTTTCG
CCTCTAGCCTACCCCAGCTTGTTTGGGACTAAAGGCTTTGTTGTTGTTCTTGTTATACAT
AATCCTATTCTATTAGAAAGATCAGCAACATTTCAGTTACGGCACGATGGCGCCAGACCA
ATGTTTTCGAGTCGATGAGTTCTAGGGTAGCGACTTTTGACTAGTTGTGACTAGTCTAAT
ATCATGGTTGACTAATCGACATGAGTTAAGCAATAGGTACAGGAGAGGAGCAGCGCGCCG
GCCAAGGTGGGTCACGGGATAGGTTTGGGTCGGGGAAATAGAAAAACATATGACAGGCAG
GGCCAGCTTTTAGTCGTTCGACTCAAAAACCTGGACCGGTCGAGACTAGTCGATTGGGTC
GCTTGACTAAGGCAATGATTCAAGTCAACATGTTGAGTCGACTTTCAGTCACGACTCGTC
GACTAGTCAACGACTAGTCGTTTCTACTGAAAAACAGTGCGGCAAACAAAAAGCCTTTTA
TACACATATAAAGATTAGTTTTTCCAAATTCAATATCTTCCAAAGAGCCAAACAGCCTCA
ATAAGTTCCTATTTATATGGAAATATTCTAATATTCAACATATTCAGACCATAGCACTGT
TGAAAGAGTATATGTAAGGATTACGTAATGTATGGATTTTCTAAACATCAGGATCAGAAA
AAGCTTGTTATATCTTACCTGCTCTTTTGTCCAGCTCTTGCAGATGTTTCTAAGGTAAAG
AGTATTATCACCTCTAGAAGCTGATACTTTAACCATTTCCCCTGTCACCTGAGAAAAATA
ATATGCAAAGAAAATAATGGCCGTTATTCAACAAACTAAGACATATTCAAAGAAAAACCA
TTCGAGGGACAGAAGGGTTTATTGCGTCAAAACCTCAGCTCCCTCCTTAAATTCGGCAAG
AGCCTTCTTTGCAGCTTCAGTGCTCATATAACGAACGAATGCAACGCCGCCATTCTTTTT
TCTAATTCTTTTAATAGATTCGATCTCTCCGAATTGAGAAAAGACCTCTGTAATGTCTTT
CTCGGGACAACCCTTAGGCAATCCATGAAGAAATATTTGTAAGTCTTTAGCATTGCCCAC
TGAAACTGAACCCAGTGTGAGCAATGAGGAGTCAAGTTCACCATTCTGCACCTCAGAATG
GACATTCAACTGGCAGGCAACACCATCCTCGTCGTTATTCCCATTTGTACCTTCATGCCC
AGATTCTTCATGTTCTTCTTCAGATAGTTCATTCATGTCTGGAGCATACATGGAAAAGAT
GACCGCGTTAAAACCATCAACTAGTTGGACATAGTATAGGGCACGAGAAACATGATTTTT
GCAAGCAATTTGCATTTTTTATCCGACAGGAAATAGTGTCAAGCATAATGTTCAGCATAA
GAATGTGTGTTATATGACAAAAATACACAGCAGTATTCCTCACAAATAGATTTTATGTTT
GGTGCTAATAGACAAATAAACTACTGAACATTCCAACCATGAGGGTACATGTTTAATGAG
ATGGCACTCGGTCTCTATGGCAACCTTGCTTTATGTAAAAACCGACAAAATTGGCATATG
CCATATATGAATTAGCTAATTGTCAGCTTCATGTCTTCGGTCCATTTTGACACATAAGTG
CTCACCAATAAGCAAGTGAGGGTACAAAATCTATTGACAAAGGCTAAACAAAATCTCCAT
TTCCCATGCAACATTATTAATACGAGATTCCTCCACCCTCAACCTAACAACACCAAACTG
TAAGCGATAACGTCTAACACAAGTCCAGTCAAAAACAAGATTATTATTGCTATAAAAAAA
GATAGCATTGAACTGCGTAATATACGTGAATAGGCTAGCCCTACTTACCATCTGGGGCGG
CACCTTCTCCCGGGAGCTCTGTAGTATCCTCTTCCATTGCATCCTCTTCAACTTCCTCCT
CTTCTGCCTCTTCCATTGCATCCTCTTCAACTTCCTCCTCTTCTGCCTCTTCCATTGCAT
CCTCTTCAGCTTCCTCCTCTTCTGCCTCTTCTAGTCCATCATCCACATTAGCGGCCTCCT
CTACCACGGCAGACTCCAACCCTGTAACTTCACCGCCGCCCTCCTTGGATACCGTTACCA
TTGATTTCTCCTCATCACCGCCATCCACAGTCGCCGTCTTCTCCGACCCAGCCGCCAGAA
CGGTATCCTTCTCATCATGCTCGACTTCATCGGATTCCTCCTCAGCGTCCTCAGCATCCT
CCTCCGCGTCCTCTAGATCCTCCTCCGCTTCCTCGGGATCATCCTCCGCATCAGGGTCCT
CCTCCTCCAACACCTCCTCATCCGGCTCCTCCTCGTAGGCTTCCTCCTCTAGGGACTCCG
CCCCGGTGGCCTCCTCACGCCCCACCTCACCGAGATCCTCCACCGCCATCTTGTCGTTCC
CGCCACCATCCTCCGCAACCGTAACACTAGCCTCCGCCGACTCGGGAGGGGTCGCCGACA
CAACCGGAGGGGGCGCCGGGGAGGTATCTGGCGGGGCGGCCGCGGGAGTGGTCTCCGCCG
CAACCGGAGGGGGCGCCGGGGATCTCTCTGGGGTGGCGGACGCGGGAGGAGTCTCCGCCG
CAACCGGAGGGGGCGCCGAGGAGCTCTCTGGGGAGGCGGCCGCAGCCCGCGGCCGCCGCC
GGGGTTTCCTGGCTTTGGCCGGAGGCATGGGGAAGGTCGCCGAGGGTTTGCTGTGTAAGG
TTCGGTGTCGTGGTTCGACGGTGAGGTTGGAGATTGGAGTTTGGAGATATGTTACGACCT
CTGCCTCCCACGGCCTGCCTACAGCGAGCGCCTCTACTCCAACGGCCCGTCGTCACTACT
GGGCTGGAGTGCCTTTCGTCTGATCAAGCCCAACAGCCGGTTTGCAGCCCAAGACTGAGA
CACCACACGCTAGGTTAAGAAGGCGTCGATCCCTCGTGCGCGAGGGTGTGGTTGATGTAT
TTCGTACCTGTCGGCGGCTTCTCTCTCTTGAACCCCCTTCTTCCTCTCGCGTGAACCTCG
GATTCGGCTGAATCCTTGTATCAAACCGGTGATTGAGAGTAAATCCCACTTGAAGCGTAA
TAATTGGTGTGAGAGCCACTCCGATCTTCACGAAATTTTTCCACGTCATCAATCTGGCCG
GCCGATTTCCCTCCATCATCCAGACCCAACACGGAAAAACCGCATCCATGGAGGAAACCA
ACAAGGCATTGGCTAATCTGACGGCGACGATCACCGCCATGTCCGCCCAGCTCAGCGAGA
TCCACCCGCCGTTCTTGAGCTCCAAGGGTGGAGGCCGACGATCGAGCGTTCAGTAGACAT
GGAGGTCACGAAGTTGCGTCAGAGCATCCACGCGATGCGCACGGCGCCCGCATCAGCCCC
TGATCCGGCGCTGACCAAGGAGAAGGAGACGGCACCGCTGATCCGCCTCGCGAATCTGTC
GCCCATGCTTCATCCGCGGCGAACGCATCTGTGCATCGACCAGGCGAGTAGCTACAAGCT
CGTGGTGATTGCACTCATGGGCCCATCGTCCACGACGTTTGCAACGGATCTACGGGGGAA
ATCGTTGAGGGAGACACACACACCCCCACGGTTGCCTCCGACCAAGGTTGAGCGGGCGGA
GACCGTTCCAAGTGAACCAGACTGTTGTGTGTTGTCCAAGGAAGCCCTGGAAGGAGCAGA
ATCACCCATGATAATGTGTTTGCATGGCTGGGTGCAGCAATGCGAAGTTCTGATGCTGGT
GGACTCTGGATCATCTCATAGTTTCATCAATTCATCTTTGGCTCACCAATTGCAAGGGGT
CCAGTAGGCGCGTCACCCCTTGTCTGTGTGTGTGGCAAATGGAGGCATTATTCGCAGTGA
TCAAGAGATACCGGGGTGTGAGTGGCGTTCTCAAGGGGTCAAATTCACCACCAACCTCAA
GATTCTGCCCCTCGGGTGTTATGATGTGATTTTGGGGATTGATTGGCTGGCCTGTAATAT
CCCTATGCAAGTACGTTGGTTGGAGAAGACAATGAATTTTTAGCACCAAGGGAAGTGTGT
GCACCTCTTTGAAGTCCGCGCGGATGTCACTCGTTGTGACCTCATCTCCGGAACAGAACT
CCACATCCTGCTTGACCGAGATGCAGTCATCACAGTCGTCCAACTATGTGCCGCTCCTCA
GGACATGGAGCAGCCACAGATTTCGGAGGCTTTGGGCGAGCTGATTGAGCAGTTTGGGGT
CTTGTTTGAAGAGCCTAAAGGATTGCCACCGCAGATCTTTTGATCATTCCATTCCTCTGG
CCCTTGATGCAAGACCTATGAATCTGCGCCCCTACAGGCACAGCCCAGCGCAAAAAAGAT
GAGGTGGAGAGGTAGGTGGCACGATGTTAGAGCAAGGCATCATTCGGCTAAGTGTGAGTC
CATTCGCGTCGCAGGTCCTATTGGTGCAGAAGAAAGACCTCACTTGGCGGTTCTGCGTGG
ACTACCGGCATCTCAACGCCATCACGGTCAAAAATCGCTACCCACTACCTGTGATCAAAG
AGATTTTGGACGAACTAGCAGGATCTCGTCTGTTTACTAGCTTGGATCTTCGTGTGGGGT
ACCACCAAATTCGGATGAGGCATGAAGATGAGCATAAAACAACGTTTAAAACACACCATG
GGCACTTTGAATTCAAGGTCATGCCTTATGGCGTCACTGGTGGACCAGCCACATTCCAGG
GAGGCATGAACATTGTACCGTCTCCCCTGCTCCAGAAAGGCGTGCTGGTATTCATCGATG
ACATCTTGATCCACAACGCACACGAGGATGCACACCTCAGTCTGTTATGACAAGTCTTCC
AACTGCTCAAAGACCACAACCTGAAGATCAAACGTAGCAAATGCTCTTTTGCTCGACCAA
AACTACTGTACTTGGGGCATGAGATCAGCGGTGATGGTGTTCGCACAGATCGCAAGAACA
TTGCAGCAGTTCAAAACTGGCTAGTCCCTACTAGTGTCAAAGGAGTGCGGGGATTTATGG
GTCTTGTTGGGTATTATCGCAAGTTTGTGCATGGTTTTGCCGTCACCTGTCGACCACTTA
AGGATCTTCTCAAGAAAGGTGTCGTATTTCGATGGATGGAGCTGGAGGATGGTGCCTTTC
GGGCTCTTCAGGAGGCGTTGATCACGACACCAGTGTTGGCAGTGCCCAATTTTACCAGAC
CCTTTGAGCTAGAAACAGATGCATCAAACTATGGCATCGGGGCAGTGTTGTCTTAGGATA
AGCACTCTATCGGGTACTTGAGTCGTGCTTTGGGACCATGTAACAGGATGCTTAGCACAT
TTGAGAATGAAGGCTTGGTGATTTTGCTGGCAGTAGACCATTGGAGAACTTATGTGTAAA
ATGATGAATTCACAGTACACACGGGCCAGCGGAGCGTGATTCATGTGGAAGACCAGCGAC
TGGCCACCCCTTAGCAGCAAAAGATCATGACAAAGATGTTCGGCCTGAGGTACCGCATCG
TGTACAAAAAAGGTATGGACAACCGGGCCGCTGATTCTCTTTCATGCATGCTCGTACCTC
CCCATGGTGACCTTGCAACCATCACTACAGTTATGCCAGCTTGGCTGGAAGCAGTCCGGC
AAGGTTACCAAGATGACCCCGCAGCTAGGGCCTGTTGACTCGGTTGGCCACTCGCAAAGA
TCACCCAGATAGCTAATCGCTCCAAGATGGCATTATTCGGCAGCACGGGCGGGTTTGGCT
GGGTGACAATGTGGACCTCCAAAAGCAAGTGTTGGATGCCCTTCATGCAGGCGCTATTGG
TGGCCATTCGTGGTTCAATGCCACTCACAAAAGAGTGCAATGACTGTTCACTTGGCCAGG
ACTCAAACATAATGTCAAGCTCTTCGTCGAGGCATGCCAAGTATGCAAGCAAGCCAAGCC
CGAGCCCGTCCGCTACCCGAGCTTCCTCGAACCCCTGCCCGTACCAACACAAGCATGGCA
TATGATCACATTGGACTTCGTGGAGGTCCTTCCCCGTTCCTCGGGTTACAATTATGTATT
GGTGGTTGATAACCCACAAGTATAGGGGGGCGCAACAGTTTTCGAGGGTAGTGTANNNNN
NNNNNATTTATTGATTCGACTCAAGGGGGGCAAAGAATATTATTGAGTATTAGCAGCTGA
GTTGTCAATTCACACACACCTGA